Rh7AG299400

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000722
Physical Location & Seq
Reverse (-)
32760099 .. 32765658
5560 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG299400.1

Sequence Viewer

Length: 744 bp
ATGGTATTATTCTTGCAGGTTGATCCTGAATCTATTATTGCTGGTAAGGCTGCTATTGGAAATTTGTTGGGTGGCATTGGCTATTTCTTTGGCCAGTCAAAAATTGCCCTCCCTAGGGATGTGAATTTTTCGAGACTACTTCTAAGCGCTTGCAAGCTTCTCTATCCTAAAAACTTGGTTCACTTCTATCCACTTGCTAGCTGTCTCAAAGGTACTGCATCCATCGAGTGCAACAATGAAGGGGTATATTTTGTTGAAGCCCGGGTTAAGTGTCAGCTGTTAGGTTTTCTTAAACAACCTGATCCTAAGTTATTTAACCAATTCATGGCAAAACATAATTCTAAAACTGCTCAGTTAGCCTTGGGTACTTGTGTCTTGCTTGTTCAAATCAGTGTTTTCAACTGCGGAGGAATAGTTGTTGCTATATCCCCTTTACATAAGATTGCAGATGGAACATCCCTCCACACATTTGTACGCTTCTGGGCAGCTATAAATCGCGGTGAGTACCATCAACTAGTGCTACCAACGTTTAATGGAGCAACTTTGTTGCCGACTAAAGACTTGTCTGCCATGCACAACTTCATGGGACCGATCCCAACTCAAACTTTAACCACAAGAATGTTCATGTTTAATGTGTCAAAGATGGCAAGTTTCAAGCCAAAAGTTCACCCCGACAAACGGATAACTAGTTCTGGCAATCATCTTGAAATGTGCTCTTGCTGCTTCTCATCAATCCAAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

247

Amino Acids

27.15

Weight (kDa)

9.34

Isoelectric Point (pI)

29.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 58 - 189 5.9e-31 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 7
AccB7I CCANNNNNTGG 1 cut(s) 325
AccII CGCG 1 cut(s) 498
AciI CCGC 2 cut(s) 405, 498
AclI AACGTT 1 cut(s) 527
AclWI GGATC 3 cut(s) 17, 296, 586
AcoI YGGCCR 1 cut(s) 91
AcsI RAATTY 2 cut(s) 61, 124
AfaI GTAC 4 cut(s) 214, 367, 474, 506
AfeI AGCGCT 1 cut(s) 148
AfiI CCNNNNNNNGG 4 cut(s) 114, 115, 325, 678
AgsI TTSAA 5 cut(s) 257, 386, 400, 655, 707
AhlI ACTAGT 2 cut(s) 514, 686
AloI GAACNNNNNNTCC 2 cut(s) 673, 705
AluBI AGCT 4 cut(s) 157, 201, 277, 488
AluI AGCT 4 cut(s) 157, 201, 277, 488
Alw21I GWGCWC 1 cut(s) 716
Alw26I GTCTC 2 cut(s) 127, 209
AlwI GGATC 3 cut(s) 17, 296, 586
Ama87I CYCGRG 1 cut(s) 261
Aor51HI AGCGCT 1 cut(s) 148
AoxI GGCC 1 cut(s) 91
ApeKI GCWGC 3 cut(s) 50, 485, 720
ApoI RAATTY 2 cut(s) 61, 124
AspA2I CCTAGG 1 cut(s) 113
AspLEI GCGC 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 587
AsuC2I CCSGG 2 cut(s) 262, 263
AsuHPI GGTGA 2 cut(s) 512, 659
AsuNHI GCTAGC 1 cut(s) 197
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 1 cut(s) 587
AvrII CCTAGG 1 cut(s) 113
BaeI ACNNNNGTAYC 2 cut(s) 357, 390
BalI TGGCCA 1 cut(s) 93
Bbv12I GWGCWC 1 cut(s) 716
BbvI GCAGC 3 cut(s) 37, 497, 707
BccI CCATC 4 cut(s) 230, 443, 516, 637
BcnI CCSGG 2 cut(s) 262, 263
BcoDI GTCTC 2 cut(s) 127, 209
BcuI ACTAGT 2 cut(s) 514, 686
BfaI CTAG 4 cut(s) 114, 198, 515, 687
BfoI RGCGCY 1 cut(s) 150
BfuAI ACCTGC 1 cut(s) 7
BisI GCNGC 3 cut(s) 51, 486, 721
BlnI CCTAGG 1 cut(s) 113
BlsI GCNGC 3 cut(s) 52, 487, 722
Bme1390I CCNGG 2 cut(s) 262, 263
Bme18I GGWCC 1 cut(s) 587
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 587
BmiI GGNNCC 1 cut(s) 588
BmrFI CCNGG 2 cut(s) 262, 263
BmsI GCATC 1 cut(s) 227
BmtI GCTAGC 1 cut(s) 201
BpuMI CCSGG 2 cut(s) 262, 263
BsaJI CCNNGG 3 cut(s) 113, 261, 360
BsaXI ACNNNNNCTCC 2 cut(s) 399, 429
Bsc4I CCNNNNNNNGG 4 cut(s) 114, 115, 325, 678
Bse1I ACTGG 1 cut(s) 94
BseDI CCNNGG 3 cut(s) 113, 261, 360
BseGI GGATG 3 cut(s) 124, 218, 455
BseLI CCNNNNNNNGG 4 cut(s) 114, 115, 325, 678
BseMII CTCAG 1 cut(s) 365
BseNI ACTGG 1 cut(s) 94
BseXI GCAGC 3 cut(s) 37, 497, 707
Bsh1236I CGCG 1 cut(s) 498
BshFI GGCC 1 cut(s) 93
BsiHKAI GWGCWC 1 cut(s) 716
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 1 cut(s) 262
BslFI GGGAC 1 cut(s) 600
BslI CCNNNNNNNGG 4 cut(s) 114, 115, 325, 678
BsmAI GTCTC 2 cut(s) 127, 209
BsmFI GGGAC 1 cut(s) 600
BsnI GGCC 1 cut(s) 93
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 1 cut(s) 716
Bsp143I GATC 3 cut(s) 22, 301, 591
BspACI CCGC 2 cut(s) 405, 498
BspANI GGCC 1 cut(s) 93
BspCNI CTCAG 1 cut(s) 364
BspFNI CGCG 1 cut(s) 498
BspLI GGNNCC 1 cut(s) 588
BspMI ACCTGC 1 cut(s) 7
BspOI GCTAGC 1 cut(s) 201
BspPI GGATC 3 cut(s) 17, 296, 586
BsrI ACTGG 1 cut(s) 94
BssECI CCNNGG 3 cut(s) 113, 261, 360
BssMI GATC 3 cut(s) 22, 301, 591
BssT1I CCWWGG 2 cut(s) 113, 360
BstC8I GCNNGC 3 cut(s) 151, 155, 199
BstDEI CTNAG 3 cut(s) 143, 306, 351
BstF5I GGATG 3 cut(s) 124, 218, 455
BstFNI CGCG 1 cut(s) 498
BstH2I RGCGCY 1 cut(s) 150
BstHHI GCGC 1 cut(s) 149
BstKTI GATC 3 cut(s) 25, 304, 594
BstMAI GTCTC 2 cut(s) 127, 209
BstMBI GATC 3 cut(s) 22, 301, 591
BstMWI GCNNNNNNNGC 3 cut(s) 47, 356, 720
BstSCI CCNGG 2 cut(s) 260, 261
BstUI CGCG 1 cut(s) 498
BstV1I GCAGC 3 cut(s) 37, 497, 707
BsuRI GGCC 1 cut(s) 93
BtsCI GGATG 3 cut(s) 124, 218, 455
BtsIMutI CAGTG 1 cut(s) 397
BveI ACCTGC 1 cut(s) 7
Cac8I GCNNGC 3 cut(s) 151, 155, 199
CfoI GCGC 1 cut(s) 149
Cfr13I GGNCC 1 cut(s) 587
Cfr9I CCCGGG 1 cut(s) 261
Csp6I GTAC 4 cut(s) 213, 366, 473, 505
CviAII CATG 4 cut(s) 325, 571, 583, 625
CviQI GTAC 4 cut(s) 213, 366, 473, 505
DdeI CTNAG 3 cut(s) 143, 306, 351
DpnI GATC 3 cut(s) 24, 303, 593
DpnII GATC 3 cut(s) 22, 301, 591
EaeI YGGCCR 1 cut(s) 91
Eco130I CCWWGG 2 cut(s) 113, 360
Eco47I GGWCC 1 cut(s) 587
Eco47III AGCGCT 1 cut(s) 148
Eco88I CYCGRG 1 cut(s) 261
EcoT14I CCWWGG 2 cut(s) 113, 360
ErhI CCWWGG 2 cut(s) 113, 360
FaeI CATG 4 cut(s) 328, 574, 586, 628
FaiI YATR 9 cut(s) 247, 326, 336, 425, 438, 491, 572, 584, 626
FaqI GGGAC 1 cut(s) 600
FatI CATG 4 cut(s) 324, 570, 582, 624
Fnu4HI GCNGC 3 cut(s) 51, 486, 721
FokI GGATG 3 cut(s) 131, 205, 442
Fsp4HI GCNGC 3 cut(s) 51, 486, 721
FspBI CTAG 4 cut(s) 114, 198, 515, 687
GlaI GCGC 1 cut(s) 148
GluI GCNGC 3 cut(s) 51, 486, 721
HaeII RGCGCY 1 cut(s) 150
HaeIII GGCC 1 cut(s) 93
HapII CCGG 1 cut(s) 262
HhaI GCGC 1 cut(s) 149
Hin1II CATG 4 cut(s) 328, 574, 586, 628
Hin6I GCGC 1 cut(s) 147
HinP1I GCGC 1 cut(s) 147
HindIII AAGCTT 1 cut(s) 155
HinfI GANTC 1 cut(s) 29
HpaII CCGG 1 cut(s) 262
HphI GGTGA 2 cut(s) 512, 659
Hpy166II GTNNAC 2 cut(s) 181, 667
Hpy188III TCNNGA 3 cut(s) 26, 132, 704
Hpy8I GTNNAC 2 cut(s) 181, 667
HpyAV CCTTC 1 cut(s) 233
HpyCH4IV ACGT 1 cut(s) 527
HpyCH4V TGCA 6 cut(s) 16, 153, 218, 231, 446, 574
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 356, 720
HpyF3I CTNAG 3 cut(s) 143, 306, 351
HpySE526I ACGT 1 cut(s) 527
Hsp92II CATG 4 cut(s) 328, 574, 586, 628
HspAI GCGC 1 cut(s) 147
Kzo9I GATC 3 cut(s) 22, 301, 591
LmnI GCTCC 1 cut(s) 536
LpnPI CCDG 8 cut(s) 2, 27, 39, 107, 275, 312, 466, 678
Lsp1109I GCAGC 3 cut(s) 37, 497, 707
LweI GCATC 1 cut(s) 227
MaeI CTAG 4 cut(s) 114, 198, 515, 687
MaeII ACGT 1 cut(s) 527
MalI GATC 3 cut(s) 24, 303, 593
MboI GATC 3 cut(s) 22, 301, 591
MhlI GDGCHC 1 cut(s) 716
MlsI TGGCCA 1 cut(s) 93
MluCI AATT 5 cut(s) 61, 102, 124, 320, 337
MluNI TGGCCA 1 cut(s) 93
MnlI CCTC 3 cut(s) 119, 401, 470
Mox20I TGGCCA 1 cut(s) 93
MscI TGGCCA 1 cut(s) 93
MseI TTAA 6 cut(s) 267, 291, 315, 531, 608, 630
MslI CAYNNNNRTG 1 cut(s) 617
Msp20I TGGCCA 1 cut(s) 93
MspA1I CMGCKG 1 cut(s) 277
MspI CCGG 1 cut(s) 262
MspR9I CCNGG 2 cut(s) 262, 263
MvnI CGCG 1 cut(s) 498
MwoI GCNNNNNNNGC 3 cut(s) 47, 356, 720
NciI CCSGG 2 cut(s) 262, 263
NdeII GATC 3 cut(s) 22, 301, 591
NheI GCTAGC 1 cut(s) 197
NlaIII CATG 4 cut(s) 328, 574, 586, 628
NlaIV GGNNCC 1 cut(s) 588
PfeI GAWTC 1 cut(s) 29
PflMI CCANNNNNTGG 1 cut(s) 325
PkrI GCNGC 3 cut(s) 52, 487, 722
Psp1406I AACGTT 1 cut(s) 527
PspN4I GGNNCC 1 cut(s) 588
PspPI GGNCC 1 cut(s) 587
PvuII CAGCTG 1 cut(s) 277
RsaI GTAC 4 cut(s) 214, 367, 474, 506
RsaNI GTAC 4 cut(s) 213, 366, 473, 505
RseI CAYNNNNRTG 1 cut(s) 617
SaqAI TTAA 6 cut(s) 267, 291, 315, 531, 608, 630
SatI GCNGC 3 cut(s) 51, 486, 721
Sau3AI GATC 3 cut(s) 22, 301, 591
Sau96I GGNCC 1 cut(s) 587
ScrFI CCNGG 2 cut(s) 262, 263
SduI GDGCHC 1 cut(s) 716
SetI ASST 9 cut(s) 21, 159, 203, 214, 279, 286, 301, 490, 530
SfaNI GCATC 1 cut(s) 227
SinI GGWCC 1 cut(s) 587
SmaI CCCGGG 1 cut(s) 263
SmiMI CAYNNNNRTG 1 cut(s) 617
SpeI ACTAGT 2 cut(s) 514, 686
Sse9I AATT 5 cut(s) 61, 102, 124, 320, 337
SsiI CCGC 2 cut(s) 405, 498
SspMI CTAG 4 cut(s) 114, 198, 515, 687
StyD4I CCNGG 2 cut(s) 260, 261
StyI CCWWGG 2 cut(s) 113, 360
TaiI ACGT 1 cut(s) 530
TaqI TCGA 2 cut(s) 131, 225
TaqII GACCGA 1 cut(s) 604
TasI AATT 5 cut(s) 61, 102, 124, 320, 337
TfiI GAWTC 1 cut(s) 29
Tru1I TTAA 6 cut(s) 267, 291, 315, 531, 608, 630
Tru9I TTAA 6 cut(s) 267, 291, 315, 531, 608, 630
TscAI CASTG 1 cut(s) 397
TseI GCWGC 3 cut(s) 50, 485, 720
TspDTI ATGAA 4 cut(s) 252, 313, 571, 613
TspGWI ACGGA 1 cut(s) 694
TspMI CCCGGG 1 cut(s) 261
TspRI CASTG 1 cut(s) 397
Van91I CCANNNNNTGG 1 cut(s) 325
VpaK11BI GGWCC 1 cut(s) 587
XapI RAATTY 2 cut(s) 61, 124
XmaI CCCGGG 1 cut(s) 261
XmaJI CCTAGG 1 cut(s) 113
XspI CTAG 4 cut(s) 114, 198, 515, 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.