Rroxscaffold_6G00394390

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000722
Physical Location & Seq
Forward (+)
14830910 .. 14832470
1561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00394390.1

Sequence Viewer

Length: 339 bp
ATGCCTCCTACCTTATACCCATCTATCATATTTTTCTACTCTTCCCCTACTAGTGATTCCGCTTCCACTGTTTCAGAGAGCTTGCAAGCATCTCTCTCCAAAGCTTTGGTTCTCTTCTATCCACTCGCTGGCCGACTGAAAACCGCTGCCTCCATTGACTGCAACGACGAAGGAGCTGATTTTCTTGAGGCCCGATTGGGAGCTCATGGAAGCCTCCCCAAGCTTGACGACCTACACCCCGGCAACCTATTATTGGCAGGGTTATCAGACTACAACCAAAGCCAGCACCAACCGTTGTCACCGGCCAACGGCTGGGCCATGGGGAAACCTGAACCCTAG

Protein Analysis

112

Amino Acids

11.89

Weight (kDa)

4.83

Isoelectric Point (pI)

46.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 4 - 91 1.3e-17 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 128, 312
AciI CCGC 2 cut(s) 60, 144
AcoI YGGCCR 2 cut(s) 130, 303
AfiI CCNNNNNNNGG 4 cut(s) 128, 253, 308, 312
AhlI ACTAGT 1 cut(s) 50
AluBI AGCT 5 cut(s) 81, 104, 176, 203, 223
AluI AGCT 5 cut(s) 81, 104, 176, 203, 223
Alw21I GWGCWC 1 cut(s) 205
AoxI GGCC 4 cut(s) 130, 189, 303, 315
ApeKI GCWGC 1 cut(s) 146
AspS9I GGNCC 2 cut(s) 190, 315
AsuC2I CCSGG 1 cut(s) 240
AsuHPI GGTGA 1 cut(s) 291
BanII GRGCYC 1 cut(s) 205
Bbv12I GWGCWC 1 cut(s) 205
BbvI GCAGC 1 cut(s) 133
BccI CCATC 1 cut(s) 28
BceAI ACGGC 1 cut(s) 325
BcnI CCSGG 1 cut(s) 240
BcuI ACTAGT 1 cut(s) 50
BfaI CTAG 2 cut(s) 51, 337
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
Bme1390I CCNGG 1 cut(s) 240
BmgT120I GGNCC 2 cut(s) 190, 315
BmrFI CCNGG 1 cut(s) 240
BmsI GCATC 1 cut(s) 98
BpuEI CTTGAG 1 cut(s) 206
BpuMI CCSGG 1 cut(s) 240
BsaJI CCNNGG 2 cut(s) 238, 318
Bsc4I CCNNNNNNNGG 4 cut(s) 128, 253, 308, 312
Bse118I RCCGGY 1 cut(s) 301
BseDI CCNNGG 2 cut(s) 238, 318
BseLI CCNNNNNNNGG 4 cut(s) 128, 253, 308, 312
BseXI GCAGC 1 cut(s) 133
BseYI CCCAGC 1 cut(s) 312
BshFI GGCC 4 cut(s) 132, 191, 305, 317
BsiHKAI GWGCWC 1 cut(s) 205
BsiSI CCGG 2 cut(s) 240, 302
BslI CCNNNNNNNGG 4 cut(s) 128, 253, 308, 312
BsnI GGCC 4 cut(s) 132, 191, 305, 317
Bsp1286I GDGCHC 1 cut(s) 205
Bsp19I CCATGG 1 cut(s) 318
BspACI CCGC 2 cut(s) 60, 144
BspANI GGCC 4 cut(s) 132, 191, 305, 317
BsrFI RCCGGY 1 cut(s) 301
BssAI RCCGGY 1 cut(s) 301
BssECI CCNNGG 2 cut(s) 238, 318
BssT1I CCWWGG 1 cut(s) 318
Bst4CI ACNGT 2 cut(s) 70, 294
Bst6I CTCTTC 2 cut(s) 46, 119
BstC8I GCNNGC 4 cut(s) 83, 87, 130, 284
BstDSI CCRYGG 1 cut(s) 318
BstSCI CCNGG 1 cut(s) 238
BstV1I GCAGC 1 cut(s) 133
BstXI CCANNNNNNTGG 1 cut(s) 106
BsuRI GGCC 4 cut(s) 132, 191, 305, 317
BtgI CCRYGG 1 cut(s) 318
BtsIMutI CAGTG 1 cut(s) 66
Cac8I GCNNGC 4 cut(s) 83, 87, 130, 284
Cfr10I RCCGGY 1 cut(s) 301
Cfr13I GGNCC 2 cut(s) 190, 315
CviAII CATG 2 cut(s) 206, 319
EaeI YGGCCR 2 cut(s) 130, 303
Eam1104I CTCTTC 2 cut(s) 46, 119
EarI CTCTTC 2 cut(s) 46, 119
Ecl136II GAGCTC 1 cut(s) 203
Eco130I CCWWGG 1 cut(s) 318
Eco24I GRGCYC 1 cut(s) 205
Eco53kI GAGCTC 1 cut(s) 203
EcoICRI GAGCTC 1 cut(s) 203
EcoT14I CCWWGG 1 cut(s) 318
EcoT38I GRGCYC 1 cut(s) 205
ErhI CCWWGG 1 cut(s) 318
FaeI CATG 2 cut(s) 209, 322
FaiI YATR 4 cut(s) 16, 29, 207, 320
FatI CATG 2 cut(s) 205, 318
Fnu4HI GCNGC 1 cut(s) 147
FriOI GRGCYC 1 cut(s) 205
Fsp4HI GCNGC 1 cut(s) 147
FspBI CTAG 2 cut(s) 51, 337
GluI GCNGC 1 cut(s) 147
GsaI CCCAGC 1 cut(s) 316
HaeIII GGCC 4 cut(s) 132, 191, 305, 317
HapII CCGG 2 cut(s) 240, 302
Hin1II CATG 2 cut(s) 209, 322
HindIII AAGCTT 2 cut(s) 102, 221
HinfI GANTC 1 cut(s) 56
HpaII CCGG 2 cut(s) 240, 302
HphI GGTGA 1 cut(s) 291
Hpy188I TCNGA 2 cut(s) 76, 268
Hpy188III TCNNGA 1 cut(s) 185
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 1 cut(s) 164
HpyCH4III ACNGT 2 cut(s) 70, 294
HpyCH4V TGCA 2 cut(s) 85, 162
Hsp92II CATG 2 cut(s) 209, 322
LmnI GCTCC 2 cut(s) 173, 200
LpnPI CCDG 6 cut(s) 114, 243, 253, 296, 298, 315
Lsp1109I GCAGC 1 cut(s) 133
LweI GCATC 1 cut(s) 98
MaeI CTAG 2 cut(s) 51, 337
MaeIII GTNAC 1 cut(s) 297
MboII GAAGA 2 cut(s) 33, 106
MhlI GDGCHC 1 cut(s) 205
MnlI CCTC 4 cut(s) 15, 160, 181, 224
MspA1I CMGCKG 1 cut(s) 146
MspI CCGG 2 cut(s) 240, 302
MspR9I CCNGG 1 cut(s) 240
NciI CCSGG 1 cut(s) 240
NcoI CCATGG 1 cut(s) 318
NlaIII CATG 2 cut(s) 209, 322
NmuCI GTSAC 1 cut(s) 297
PfeI GAWTC 1 cut(s) 56
PflMI CCANNNNNTGG 2 cut(s) 128, 312
PkrI GCNGC 1 cut(s) 148
Psp124BI GAGCTC 1 cut(s) 205
PspFI CCCAGC 1 cut(s) 312
PspPI GGNCC 2 cut(s) 190, 315
SacI GAGCTC 1 cut(s) 205
SatI GCNGC 1 cut(s) 147
Sau96I GGNCC 2 cut(s) 190, 315
ScrFI CCNGG 1 cut(s) 240
SduI GDGCHC 1 cut(s) 205
SetI ASST 9 cut(s) 14, 83, 106, 178, 205, 225, 234, 249, 331
SfaNI GCATC 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
SpeI ACTAGT 1 cut(s) 50
SsiI CCGC 2 cut(s) 60, 144
SspMI CTAG 2 cut(s) 51, 337
SstI GAGCTC 1 cut(s) 205
StyD4I CCNGG 1 cut(s) 238
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 2 cut(s) 70, 294
TfiI GAWTC 1 cut(s) 56
TscAI CASTG 1 cut(s) 73
TseFI GTSAC 1 cut(s) 297
TseI GCWGC 1 cut(s) 146
Tsp45I GTSAC 1 cut(s) 297
TspRI CASTG 1 cut(s) 73
Van91I CCANNNNNTGG 2 cut(s) 128, 312
XspI CTAG 2 cut(s) 51, 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.