Rmu_sc0004448.1_g000015

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004448.1
OG0000722
Physical Location & Seq
Reverse (-)
60588 .. 61934
1347 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004448.1_g000015.1.cds

Sequence Viewer

Length: 1347 bp
atgagttatcatcccatgggttcaccggcaacatgcacccattcactggtaaatatcacctcaagaaagatcattagaccgtcgtctccaactcctcatcaccaaagaactctcaacctctctcttttggaccaactcttccctcctaccttataccctactatcatatatttctactccagtgatcattttccttcacataatgtttcggagagcttacgaaacatcgctatccaaggctttggtttactttatcccctcgccggccgactaagtggccctgcttccatagactgcagtgatgaaggggcttattttcttgaggcccaagtcaactgccagctctcggacttgcttaaacttcctgaacacggcttactcaacaacctcatcccggagtttgatcctcaaactgcccattccgccttaggttctgcagttttgcttgtccaaacgagtcgttttaactgcggaggaatcgctcttgctgtgtcgctgtcgcacaagatcgcagatgcaacctcatgtcaaatatttgtacgatcatgggcaggcatacatcgtgatcatgaatctgatagtcaactaatggtaccacagtttaacggagcatctctgttgccggctaaagactccttcgttaacaatttagggctaccaaagtaccaaagtttaactactaggaggttcgtgtttgatgtcaagaagattgccactctcaaggctaaaattggaggtacaaacgtacaacttgtttcagcaatcatcttgaaaagtgctcgtgctgcttcttatcaatctaaaccggagacgagttcaagtacagcagtgttgtcgcaaatggtaaatgtccgtagaagtatgggttcgttggtagaaaatgccatgggaaattggttttggccgcttcaagtgatattcaagccaaacgagacggaactacatgagttcgtggcaaatatgaggagagaaatagcaaacttctacaaagagaaggcgggcaaattcaaaggggaagatgggttcttggtgatgtctgagtcgtttagagagaggggcgagctttatagaaacaccaagggacgcatcagtgtttatagggccactagtttgtgcaagctccctgtatatgaaattgattttgggtggggaaaaccaacatgggttactagccaaagcaaccagaagaacatatttgtgttgattgatacaaaacgtggcgatgggatcgaagcatgggtgacactcgatgaagaagaaatggcgatatttgagagtgatgaggagctcctttcgttcgcttatctaaatcccactgctagtgtcaatcgtcattctcgtatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

448

Amino Acids

49.95

Weight (kDa)

8.13

Isoelectric Point (pI)

43.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 592
AccB1I GGYRCC 1 cut(s) 592
AccB7I CCANNNNNTGG 1 cut(s) 46
AciI CCGC 4 cut(s) 423, 471, 905, 998
AclWI GGATC 2 cut(s) 398, 1235
AcoI YGGCCR 2 cut(s) 265, 902
AcsI RAATTY 1 cut(s) 1004
AfaI GTAC 6 cut(s) 540, 594, 665, 739, 747, 823
AfiI CCNNNNNNNGG 5 cut(s) 46, 263, 346, 371, 394
AgsI TTSAA 5 cut(s) 772, 819, 911, 922, 1009
AhlI ACTAGT 1 cut(s) 1106
AjuI GAANNNNNNNTTGG 4 cut(s) 883, 915, 1125, 1157
AloI GAACNNNNNNTCC 2 cut(s) 1007, 1039
AluBI AGCT 5 cut(s) 216, 343, 1063, 1120, 1288
AluI AGCT 5 cut(s) 216, 343, 1063, 1120, 1288
Alw21I GWGCWC 2 cut(s) 781, 1290
Alw26I GTCTC 3 cut(s) 90, 803, 926
AlwI GGATC 2 cut(s) 398, 1235
AoxI GGCC 5 cut(s) 265, 277, 324, 902, 1101
ApeKI GCWGC 1 cut(s) 785
ApoI RAATTY 1 cut(s) 1004
Asp718I GGTACC 1 cut(s) 592
AspS9I GGNCC 4 cut(s) 130, 278, 325, 1101
AsuC2I CCSGG 1 cut(s) 395
AsuHPI GGTGA 5 cut(s) 15, 49, 92, 1042, 1252
AvaII GGWCC 1 cut(s) 130
AxyI CCTNAGG 1 cut(s) 427
BaeI ACNNNNGTAYC 6 cut(s) 584, 617, 647, 680, 729, 762
BanI GGYRCC 1 cut(s) 592
BanII GRGCYC 1 cut(s) 1290
BauI CACGAG 1 cut(s) 780
Bbv12I GWGCWC 2 cut(s) 781, 1290
BbvI GCAGC 1 cut(s) 772
BccI CCATC 2 cut(s) 1013, 1217
BceAI ACGGC 1 cut(s) 388
BcgI CGANNNNNNTGC 2 cut(s) 816, 850
BclI TGATCA 2 cut(s) 184, 565
BcnI CCSGG 1 cut(s) 395
BcoDI GTCTC 3 cut(s) 90, 803, 926
BcuI ACTAGT 1 cut(s) 1106
BfaI CTAG 4 cut(s) 681, 1107, 1170, 1320
BfmI CTRYAG 2 cut(s) 295, 435
BisI GCNGC 2 cut(s) 786, 905
BlsI GCNGC 2 cut(s) 787, 906
Bme1390I CCNGG 1 cut(s) 395
Bme18I GGWCC 1 cut(s) 130
BmgT120I GGNCC 4 cut(s) 130, 278, 325, 1101
BmiI GGNNCC 1 cut(s) 594
BmrFI CCNGG 1 cut(s) 395
BmsI GCATC 3 cut(s) 505, 620, 1095
BoxI GACNNNNGTC 1 cut(s) 82
BpmI CTGGAG 1 cut(s) 163
BpuEI CTTGAG 3 cut(s) 46, 341, 704
BpuMI CCSGG 1 cut(s) 395
BsaJI CCNNGG 4 cut(s) 15, 235, 885, 1077
BsaWI WCCGGW 1 cut(s) 805
Bsc4I CCNNNNNNNGG 5 cut(s) 46, 263, 346, 371, 394
Bse118I RCCGGY 3 cut(s) 25, 263, 622
Bse1I ACTGG 2 cut(s) 51, 180
Bse21I CCTNAGG 1 cut(s) 427
BseDI CCNNGG 4 cut(s) 15, 235, 885, 1077
BseGI GGATG 2 cut(s) 10, 390
BseLI CCNNNNNNNGG 5 cut(s) 46, 263, 346, 371, 394
BseMII CTCAG 1 cut(s) 1029
BseNI ACTGG 2 cut(s) 51, 180
BseRI GAGGAG 3 cut(s) 84, 979, 1298
BseX3I CGGCCG 1 cut(s) 265
BseXI GCAGC 1 cut(s) 772
Bsh1285I CGRYCG 1 cut(s) 268
BshFI GGCC 5 cut(s) 267, 279, 326, 904, 1103
BshNI GGYRCC 1 cut(s) 592
BsiEI CGRYCG 1 cut(s) 268
BsiHKAI GWGCWC 2 cut(s) 781, 1290
BsiSI CCGG 5 cut(s) 26, 264, 395, 623, 806
BslFI GGGAC 1 cut(s) 1095
BslI CCNNNNNNNGG 5 cut(s) 46, 263, 346, 371, 394
BsmAI GTCTC 3 cut(s) 90, 803, 926
BsmBI CGTCTC 3 cut(s) 90, 803, 926
BsmFI GGGAC 1 cut(s) 1095
BsnI GGCC 5 cut(s) 267, 279, 326, 904, 1103
Bsp1286I GDGCHC 2 cut(s) 781, 1290
Bsp143I GATC 7 cut(s) 69, 184, 403, 507, 542, 565, 1227
Bsp19I CCATGG 2 cut(s) 15, 885
BspACI CCGC 4 cut(s) 423, 471, 905, 998
BspANI GGCC 5 cut(s) 267, 279, 326, 904, 1103
BspCNI CTCAG 1 cut(s) 1030
BspHI TCATGA 1 cut(s) 568
BspLI GGNNCC 1 cut(s) 594
BspMAI CTGCAG 2 cut(s) 299, 439
BspPI GGATC 2 cut(s) 398, 1235
BspT107I GGYRCC 1 cut(s) 592
BsrFI RCCGGY 3 cut(s) 25, 263, 622
BsrI ACTGG 2 cut(s) 51, 180
BssAI RCCGGY 3 cut(s) 25, 263, 622
BssECI CCNNGG 4 cut(s) 15, 235, 885, 1077
BssMI GATC 7 cut(s) 69, 184, 403, 507, 542, 565, 1227
BssSI CACGAG 1 cut(s) 780
BssT1I CCWWGG 4 cut(s) 15, 235, 885, 1077
Bst2BI CACGAG 1 cut(s) 780
Bst4CI ACNGT 2 cut(s) 81, 600
Bst6I CTCTTC 1 cut(s) 143
BstC8I GCNNGC 7 cut(s) 265, 341, 553, 624, 1000, 1061, 1118
BstDEI CTNAG 3 cut(s) 272, 427, 1038
BstDSI CCRYGG 2 cut(s) 15, 885
BstF5I GGATG 2 cut(s) 10, 390
BstKTI GATC 7 cut(s) 72, 187, 406, 510, 545, 568, 1230
BstMAI GTCTC 3 cut(s) 90, 803, 926
BstMBI GATC 7 cut(s) 69, 184, 403, 507, 542, 565, 1227
BstMCI CGRYCG 1 cut(s) 268
BstMWI GCNNNNNNNGC 2 cut(s) 422, 785
BstNSI RCATGY 1 cut(s) 36
BstPAI GACNNNNGTC 1 cut(s) 82
BstSCI CCNGG 1 cut(s) 393
BstSFI CTRYAG 2 cut(s) 295, 435
BstV1I GCAGC 1 cut(s) 772
BstXI CCANNNNNNTGG 1 cut(s) 242
BstZI CGGCCG 1 cut(s) 265
Bsu36I CCTNAGG 1 cut(s) 427
BsuRI GGCC 5 cut(s) 267, 279, 326, 904, 1103
BtgI CCRYGG 2 cut(s) 15, 885
BtgZI GCGATG 2 cut(s) 211, 1236
BtsCI GGATG 2 cut(s) 10, 390
BtsI GCAGTG 3 cut(s) 304, 834, 1314
BtsIMutI CAGTG 6 cut(s) 44, 187, 304, 834, 1096, 1314
Cac8I GCNNGC 7 cut(s) 265, 341, 553, 624, 1000, 1061, 1118
CciI TCATGA 1 cut(s) 568
Cfr10I RCCGGY 3 cut(s) 25, 263, 622
Cfr13I GGNCC 4 cut(s) 130, 278, 325, 1101
CseI GACGC 1 cut(s) 1092
Csp6I GTAC 6 cut(s) 539, 593, 664, 738, 746, 822
CviAII CATG 9 cut(s) 16, 33, 525, 546, 569, 886, 944, 1161, 1236
CviQI GTAC 6 cut(s) 539, 593, 664, 738, 746, 822
DdeI CTNAG 3 cut(s) 272, 427, 1038
DpnI GATC 7 cut(s) 71, 186, 405, 509, 544, 567, 1229
DpnII GATC 7 cut(s) 69, 184, 403, 507, 542, 565, 1227
EaeI YGGCCR 2 cut(s) 265, 902
EagI CGGCCG 1 cut(s) 265
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
EciI GGCGGA 1 cut(s) 412
Ecl136II GAGCTC 1 cut(s) 1288
EclXI CGGCCG 1 cut(s) 265
Eco130I CCWWGG 4 cut(s) 15, 235, 885, 1077
Eco24I GRGCYC 1 cut(s) 1290
Eco47I GGWCC 1 cut(s) 130
Eco52I CGGCCG 1 cut(s) 265
Eco53kI GAGCTC 1 cut(s) 1288
Eco81I CCTNAGG 1 cut(s) 427
EcoICRI GAGCTC 1 cut(s) 1288
EcoT14I CCWWGG 4 cut(s) 15, 235, 885, 1077
EcoT38I GRGCYC 1 cut(s) 1290
ErhI CCWWGG 4 cut(s) 15, 235, 885, 1077
Esp3I CGTCTC 3 cut(s) 90, 803, 926
FaeI CATG 9 cut(s) 19, 36, 528, 549, 572, 889, 947, 1164, 1239
FaqI GGGAC 1 cut(s) 1095
FatI CATG 9 cut(s) 15, 32, 524, 545, 568, 885, 943, 1160, 1235
FauI CCCGC 1 cut(s) 991
FbaI TGATCA 2 cut(s) 184, 565
Fnu4HI GCNGC 2 cut(s) 786, 905
FokI GGATG 1 cut(s) 377
FriOI GRGCYC 1 cut(s) 1290
Fsp4HI GCNGC 2 cut(s) 786, 905
FspBI CTAG 4 cut(s) 681, 1107, 1170, 1320
GluI GCNGC 2 cut(s) 786, 905
GsuI CTGGAG 1 cut(s) 163
HaeIII GGCC 5 cut(s) 267, 279, 326, 904, 1103
HapII CCGG 5 cut(s) 26, 264, 395, 623, 806
HgaI GACGC 1 cut(s) 1092
Hin1II CATG 9 cut(s) 19, 36, 528, 549, 572, 889, 947, 1164, 1239
HincII GTYRAC 3 cut(s) 334, 584, 643
HindII GTYRAC 3 cut(s) 334, 584, 643
HinfI GANTC 5 cut(s) 457, 477, 572, 632, 1040
HpaI GTTAAC 1 cut(s) 643
HpaII CCGG 5 cut(s) 26, 264, 395, 623, 806
HphI GGTGA 5 cut(s) 15, 49, 92, 1042, 1252
Hpy166II GTNNAC 5 cut(s) 23, 248, 334, 584, 643
Hpy188I TCNGA 4 cut(s) 211, 349, 577, 1039
Hpy188III TCNNGA 7 cut(s) 63, 320, 365, 563, 569, 703, 769
Hpy8I GTNNAC 5 cut(s) 23, 248, 334, 584, 643
Hpy99I CGWCG 1 cut(s) 85
HpyAV CCTTC 4 cut(s) 204, 299, 646, 988
HpyCH4III ACNGT 2 cut(s) 81, 600
HpyCH4IV ACGT 2 cut(s) 744, 1216
HpyCH4V TGCA 5 cut(s) 36, 297, 437, 518, 1116
HpyF10VI GCNNNNNNNGC 2 cut(s) 422, 785
HpyF3I CTNAG 3 cut(s) 272, 427, 1038
HpySE526I ACGT 2 cut(s) 744, 1216
Hsp92II CATG 9 cut(s) 19, 36, 528, 549, 572, 889, 947, 1164, 1239
KpnI GGTACC 1 cut(s) 596
KroI GCCGGC 2 cut(s) 263, 622
KroNI GCCGGC 2 cut(s) 265, 624
Ksp22I TGATCA 2 cut(s) 184, 565
KspAI GTTAAC 1 cut(s) 643
Kzo9I GATC 7 cut(s) 69, 184, 403, 507, 542, 565, 1227
LmnI GCTCC 4 cut(s) 608, 1125, 1285, 1293
Lsp1109I GCAGC 1 cut(s) 772
LweI GCATC 3 cut(s) 505, 620, 1095
MaeI CTAG 4 cut(s) 681, 1107, 1170, 1320
MaeII ACGT 2 cut(s) 744, 1216
MaeIII GTNAC 2 cut(s) 1165, 1240
MalI GATC 7 cut(s) 71, 186, 405, 509, 544, 567, 1229
MboI GATC 7 cut(s) 69, 184, 403, 507, 542, 565, 1227
MboII GAAGA 6 cut(s) 130, 718, 1028, 1198, 1265, 1268
MhlI GDGCHC 2 cut(s) 781, 1290
MluCI AATT 5 cut(s) 646, 729, 892, 1004, 1134
MlyI GAGTC 3 cut(s) 466, 626, 1049
MmeI TCCRAC 1 cut(s) 113
MroNI GCCGGC 2 cut(s) 263, 622
MseI TTAA 5 cut(s) 357, 465, 603, 642, 674
MslI CAYNNNNRTG 1 cut(s) 1196
MspI CCGG 5 cut(s) 26, 264, 395, 623, 806
MspR9I CCNGG 1 cut(s) 395
MwoI GCNNNNNNNGC 2 cut(s) 422, 785
NaeI GCCGGC 2 cut(s) 265, 624
NciI CCSGG 1 cut(s) 395
NcoI CCATGG 2 cut(s) 15, 885
NdeII GATC 7 cut(s) 69, 184, 403, 507, 542, 565, 1227
NgoMIV GCCGGC 2 cut(s) 263, 622
NlaIII CATG 9 cut(s) 19, 36, 528, 549, 572, 889, 947, 1164, 1239
NlaIV GGNNCC 1 cut(s) 594
NmuCI GTSAC 1 cut(s) 1240
NspI RCATGY 1 cut(s) 36
PagI TCATGA 1 cut(s) 568
PcsI WCGNNNNNNNCGW 1 cut(s) 1336
PdiI GCCGGC 2 cut(s) 265, 624
PfeI GAWTC 2 cut(s) 477, 572
PflMI CCANNNNNTGG 1 cut(s) 46
PfoI TCCNGGA 1 cut(s) 393
PkrI GCNGC 2 cut(s) 787, 906
PleI GAGTC 3 cut(s) 465, 626, 1048
PpsI GAGTC 3 cut(s) 465, 626, 1048
PshAI GACNNNNGTC 1 cut(s) 82
Psp124BI GAGCTC 1 cut(s) 1290
PspN4I GGNNCC 1 cut(s) 594
PspPI GGNCC 4 cut(s) 130, 278, 325, 1101
PsrI GAACNNNNNNTAC 2 cut(s) 360, 392
PstI CTGCAG 2 cut(s) 299, 439
RsaI GTAC 6 cut(s) 540, 594, 665, 739, 747, 823
RsaNI GTAC 6 cut(s) 539, 593, 664, 738, 746, 822
RseI CAYNNNNRTG 1 cut(s) 1196
SacI GAGCTC 1 cut(s) 1290
SaqAI TTAA 5 cut(s) 357, 465, 603, 642, 674
SatI GCNGC 2 cut(s) 786, 905
Sau3AI GATC 7 cut(s) 69, 184, 403, 507, 542, 565, 1227
Sau96I GGNCC 4 cut(s) 130, 278, 325, 1101
SchI GAGTC 3 cut(s) 466, 626, 1049
ScrFI CCNGG 1 cut(s) 395
SduI GDGCHC 2 cut(s) 781, 1290
SfaNI GCATC 3 cut(s) 505, 620, 1095
SfcI CTRYAG 2 cut(s) 295, 435
SinI GGWCC 1 cut(s) 130
SmiMI CAYNNNNRTG 1 cut(s) 1196
SmlI CTYRAG 3 cut(s) 61, 320, 719
SmoI CTYRAG 3 cut(s) 61, 320, 719
SpeI ACTAGT 1 cut(s) 1106
Sse9I AATT 5 cut(s) 646, 729, 892, 1004, 1134
SsiI CCGC 4 cut(s) 423, 471, 905, 998
SspI AATATT 1 cut(s) 534
SspMI CTAG 4 cut(s) 681, 1107, 1170, 1320
SstI GAGCTC 1 cut(s) 1290
StyD4I CCNGG 1 cut(s) 393
StyI CCWWGG 4 cut(s) 15, 235, 885, 1077
TaaI ACNGT 2 cut(s) 81, 600
TaiI ACGT 2 cut(s) 747, 1219
TaqI TCGA 2 cut(s) 1230, 1248
TasI AATT 5 cut(s) 646, 729, 892, 1004, 1134
TatI WGTACW 1 cut(s) 821
TauI GCSGC 1 cut(s) 907
TfiI GAWTC 2 cut(s) 477, 572
Tru1I TTAA 5 cut(s) 357, 465, 603, 642, 674
Tru9I TTAA 5 cut(s) 357, 465, 603, 642, 674
TscAI CASTG 6 cut(s) 51, 187, 304, 834, 1096, 1321
TseFI GTSAC 1 cut(s) 1240
TseI GCWGC 1 cut(s) 785
Tsp45I GTSAC 1 cut(s) 1240
TspDTI ATGAA 4 cut(s) 318, 585, 1146, 1266
TspGWI ACGGA 3 cut(s) 621, 842, 950
TspRI CASTG 6 cut(s) 51, 187, 304, 834, 1096, 1321
Van91I CCANNNNNTGG 1 cut(s) 46
VpaK11BI GGWCC 1 cut(s) 130
XapI RAATTY 1 cut(s) 1004
XceI RCATGY 1 cut(s) 36
XspI CTAG 4 cut(s) 681, 1107, 1170, 1320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.