Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000722

Physical Location & Seq

Genomic Coordinates Reverse (-)

13554414 .. 13555322

Gene Structure 909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG073800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGAGTCGTTTTAACTGCGGAGGAATCGCCCTTGCTGTGTCGCTGTCGCACAAGATCGCAGATGGAACCTCATATCAAATATTTGTACGAGCATGGGCAGACATACATCGTGACCATGAATATGAGAGTCAACTAATGGTACCACAGTTTAACGGAGCATCTCTGTTGCCGGCTAAAGACTACTTTGTAAACAACTTAGGGTTACCAAAGTGGTTGCCAGAGTATCAAGGTTTAACTACTAGGAGGTTCGTGTTTGATGTCACGAAGATTGCCAATCTCAAGGCTAAAATTGGAGGTACAAATGTACAACTTGTTTCAGCAATCATCTTGAAAAGTGCTCGTGCTGCTTCTTATCAATCCAAGCCAGAGACGAGTTCAACTACAACAGTGTTGTCGCAAGCGGTAAGTTTCCGTAGAAGTATGGGTTCGGTAGTAGGGGAAAATACCATGGGAAATTGGTTTTGGCCAGTTCAAGTGGTATTCAAACCAAACGAGATGGAACTACATGAGTTGGTGGCAAATATGAGGAGAGACATAACAGACTTCTACAACGAAAAGGCGGGCAAATTCAAAGGGGAAGATGGGTTCTTGGTGATGTCTGAGTTGTTTAGAGAGAGGGGCGAGCTTTATAGAAACACCAAGGGATGCATCAGTGTTTATAGGGCCACAAGTTTGTGCAAGCTCCCTGTATATGAAGTTGATTTTGGGTGGGGGAAACCAACATGGGTTACTGGCCAAAGCAACCAGAAGAACGTATTTGTGCTGTTTGATACAAAACGTGGCGATGGGATCGAAGCATGGGTGACACTTGATGAAGAAGATATGGCCATATTTGAGACTGATAAGGAGCTTCTTTCATTCGCTTCTCTAAACCCTAGTGCTAGTGTCAATCATCACTCTCGTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

302

Amino Acids

34.05

Weight (kDa)

7.71

Isoelectric Point (pI)

27.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	3 - 284	1.5e-36	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000722)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27601 FvH4_4g17130
malus_domestica	MD07G1048300.v1.1 MD07G1095200.v1.1 MD07G1095500.v1.1 MD07G1095700.v1.1 MD07G1096300.v1.1 MD07G1096400.v1.1 MD09G1062300.v1.1 MD14G1082000.v1.1
prunus_persica	Prupe.7G029300_v2.0.a1 Prupe.7G030000_v2.0.a1
pyrus_communis	pycom07g07870 pycom07g07910 pycom07g07950 pycom111g05260 pycom14g07130 pycom17g05610
rosa_chinensis	RchiOBHm_Chr1g0325581 RchiOBHm_Chr3g0487911 RchiOBHm_Chr3g0487931 RchiOBHm_Chr3g0487961 RchiOBHm_Chr3g0487971 RchiOBHm_Chr7g0216431 RchiOBHm_Chr7g0216441
rosa_laevigata	RLG00000002570 RLG00000003149 RLG00000022955 RLG00000022960 RLG00000022961 RLG00000022964 RLG00000022965 RLG00000022966 RLG00000030119 RLG00000030129
rosa_multiflora	Rmu_sc0004155.1_g000011 Rmu_sc0004448.1_g000015 Rmu_sc0004448.1_g000025 Rmu_sc0004448.1_g000031 Rmu_sc0006722.1_g000006
rosa_roxburghii	Rroxscaffold_3G00243230 Rroxscaffold_3G00243240 Rroxscaffold_3G00250720 Rroxscaffold_3G00252280 Rroxscaffold_4G00324640 Rroxscaffold_6G00394390 Rroxscaffold_6G00394400 Rroxscaffold_6G00394430 Rroxscaffold_6G00394440
rosa_rugosa	Rorug01G0053000 Rorug03G0237300 Rorug03G0237400 Rorug07G0160300 Rorug07G0160300 Rorug07G0160300
rosa_samantha	Rh1BG056200 Rh1DG073800 Rh3AG285000 Rh3AG285200 Rh3AG285400 Rh3CG320500 Rh3CG320800 Rh3DG318900 Rh3DG319000 Rh7AG299400 Rh7AG299500 Rh7BG290900 Rh7DG300800
rosa_wichuraiana	Rw0G004660 Rw0G004670 Rw1G005690 Rw3G025280 Rw7G025450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	139
AccB1I	GGYRCC	1 cut(s)	139
AciI	CCGC	3 cut(s)	18, 401, 560
AclWI	GGATC	1 cut(s)	797
AcoI	YGGCCR	3 cut(s)	464, 733, 825
AcsI	RAATTY	1 cut(s)	566
AfaI	GTAC	4 cut(s)	87, 141, 298, 306
AgsI	TTSAA	5 cut(s)	331, 378, 473, 484, 571
AjuI	GAANNNNNNNTTGG	4 cut(s)	445, 477, 687, 719
AloI	GAACNNNNNNTCC	2 cut(s)	569, 601
AluBI	AGCT	3 cut(s)	625, 682, 850
AluI	AGCT	3 cut(s)	625, 682, 850
Alw21I	GWGCWC	1 cut(s)	340
Alw26I	GTCTC	3 cut(s)	362, 525, 830
AlwI	GGATC	1 cut(s)	797
AoxI	GGCC	4 cut(s)	464, 663, 733, 825
ApeKI	GCWGC	1 cut(s)	344
ApoI	RAATTY	1 cut(s)	566
Asp718I	GGTACC	1 cut(s)	139
AspS9I	GGNCC	1 cut(s)	663
AsuHPI	GGTGA	2 cut(s)	604, 814
BaeI	ACNNNNGTAYC	4 cut(s)	131, 164, 288, 321
BalI	TGGCCA	3 cut(s)	466, 735, 827
BanI	GGYRCC	1 cut(s)	139
BauI	CACGAG	1 cut(s)	339
Bbv12I	GWGCWC	1 cut(s)	340
BbvI	GCAGC	1 cut(s)	331
BccI	CCATC	4 cut(s)	56, 490, 575, 779
BcoDI	GTCTC	3 cut(s)	362, 525, 830
BfaI	CTAG	3 cut(s)	240, 876, 882
BisI	GCNGC	1 cut(s)	345
BlsI	GCNGC	1 cut(s)	346
BmgT120I	GGNCC	1 cut(s)	663
BmiI	GGNNCC	2 cut(s)	67, 141
BmsI	GCATC	3 cut(s)	167, 635, 657
BpuEI	CTTGAG	1 cut(s)	263
BsaJI	CCNNGG	2 cut(s)	447, 639
Bse118I	RCCGGY	1 cut(s)	169
Bse1I	ACTGG	2 cut(s)	467, 736
BseDI	CCNNGG	2 cut(s)	447, 639
BseGI	GGATG	1 cut(s)	650
BseMII	CTCAG	1 cut(s)	591
BseNI	ACTGG	2 cut(s)	467, 736
BseRI	GAGGAG	1 cut(s)	541
BseXI	GCAGC	1 cut(s)	331
BshFI	GGCC	4 cut(s)	466, 665, 735, 827
BshNI	GGYRCC	1 cut(s)	139
BsiHKAI	GWGCWC	1 cut(s)	340
BsiSI	CCGG	1 cut(s)	170
BsmAI	GTCTC	3 cut(s)	362, 525, 830
BsmBI	CGTCTC	1 cut(s)	362
BsnI	GGCC	4 cut(s)	466, 665, 735, 827
Bsp1286I	GDGCHC	1 cut(s)	340
Bsp1407I	TGTACA	1 cut(s)	304
Bsp143I	GATC	2 cut(s)	54, 789
Bsp19I	CCATGG	1 cut(s)	447
BspACI	CCGC	3 cut(s)	18, 401, 560
BspANI	GGCC	4 cut(s)	466, 665, 735, 827
BspCNI	CTCAG	1 cut(s)	592
BspLI	GGNNCC	2 cut(s)	67, 141
BspPI	GGATC	1 cut(s)	797
BspT107I	GGYRCC	1 cut(s)	139
BsrFI	RCCGGY	1 cut(s)	169
BsrGI	TGTACA	1 cut(s)	304
BsrI	ACTGG	2 cut(s)	467, 736
BssAI	RCCGGY	1 cut(s)	169
BssECI	CCNNGG	2 cut(s)	447, 639
BssMI	GATC	2 cut(s)	54, 789
BssSI	CACGAG	1 cut(s)	339
BssT1I	CCWWGG	2 cut(s)	447, 639
Bst2BI	CACGAG	1 cut(s)	339
Bst4CI	ACNGT	2 cut(s)	147, 388
BstAUI	TGTACA	1 cut(s)	304
BstC8I	GCNNGC	5 cut(s)	171, 399, 562, 623, 680
BstDEI	CTNAG	2 cut(s)	196, 600
BstDSI	CCRYGG	1 cut(s)	447
BstEII	GGTNACC	1 cut(s)	201
BstF5I	GGATG	1 cut(s)	650
BstKTI	GATC	2 cut(s)	57, 792
BstMAI	GTCTC	3 cut(s)	362, 525, 830
BstMBI	GATC	2 cut(s)	54, 789
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstPI	GGTNACC	1 cut(s)	201
BstV1I	GCAGC	1 cut(s)	331
BsuRI	GGCC	4 cut(s)	466, 665, 735, 827
BtgI	CCRYGG	1 cut(s)	447
BtgZI	GCGATG	1 cut(s)	798
BtsCI	GGATG	1 cut(s)	650
BtsIMutI	CAGTG	2 cut(s)	393, 658
Cac8I	GCNNGC	5 cut(s)	171, 399, 562, 623, 680
Cfr10I	RCCGGY	1 cut(s)	169
Cfr13I	GGNCC	1 cut(s)	663
Csp6I	GTAC	4 cut(s)	86, 140, 297, 305
CviAII	CATG	6 cut(s)	93, 116, 448, 506, 723, 798
CviQI	GTAC	4 cut(s)	86, 140, 297, 305
DdeI	CTNAG	2 cut(s)	196, 600
DpnI	GATC	2 cut(s)	56, 791
DpnII	GATC	2 cut(s)	54, 789
EaeI	YGGCCR	3 cut(s)	464, 733, 825
Eco130I	CCWWGG	2 cut(s)	447, 639
Eco91I	GGTNACC	1 cut(s)	201
EcoO65I	GGTNACC	1 cut(s)	201
EcoT14I	CCWWGG	2 cut(s)	447, 639
EcoT22I	ATGCAT	1 cut(s)	650
ErhI	CCWWGG	2 cut(s)	447, 639
Esp3I	CGTCTC	1 cut(s)	362
FaeI	CATG	6 cut(s)	96, 119, 451, 509, 726, 801
FatI	CATG	6 cut(s)	92, 115, 447, 505, 722, 797
FauI	CCCGC	1 cut(s)	553
Fnu4HI	GCNGC	1 cut(s)	345
FokI	GGATG	1 cut(s)	657
Fsp4HI	GCNGC	1 cut(s)	345
FspBI	CTAG	3 cut(s)	240, 876, 882
GluI	GCNGC	1 cut(s)	345
HaeIII	GGCC	4 cut(s)	466, 665, 735, 827
HapII	CCGG	1 cut(s)	170
Hin1II	CATG	6 cut(s)	96, 119, 451, 509, 726, 801
HincII	GTYRAC	1 cut(s)	131
HindII	GTYRAC	1 cut(s)	131
HinfI	GANTC	3 cut(s)	4, 24, 127
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	2 cut(s)	604, 814
Hpy166II	GTNNAC	2 cut(s)	131, 190
Hpy188I	TCNGA	1 cut(s)	601
Hpy188III	TCNNGA	3 cut(s)	110, 262, 328
Hpy8I	GTNNAC	2 cut(s)	131, 190
HpyCH4III	ACNGT	2 cut(s)	147, 388
HpyCH4IV	ACGT	2 cut(s)	753, 778
HpyCH4V	TGCA	2 cut(s)	648, 678
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
HpyF3I	CTNAG	2 cut(s)	196, 600
HpySE526I	ACGT	2 cut(s)	753, 778
Hsp92II	CATG	6 cut(s)	96, 119, 451, 509, 726, 801
KpnI	GGTACC	1 cut(s)	143
KroI	GCCGGC	1 cut(s)	169
KroNI	GCCGGC	1 cut(s)	171
Kzo9I	GATC	2 cut(s)	54, 789
LmnI	GCTCC	3 cut(s)	155, 687, 847
LpnPI	CCDG	7 cut(s)	183, 231, 378, 480, 699, 717, 758
Lsp1109I	GCAGC	1 cut(s)	331
LweI	GCATC	3 cut(s)	167, 635, 657
MaeI	CTAG	3 cut(s)	240, 876, 882
MaeII	ACGT	2 cut(s)	753, 778
MaeIII	GTNAC	5 cut(s)	110, 201, 259, 727, 802
MalI	GATC	2 cut(s)	56, 791
MboI	GATC	2 cut(s)	54, 789
MboII	GAAGA	5 cut(s)	277, 590, 760, 827, 830
MhlI	GDGCHC	1 cut(s)	340
MlsI	TGGCCA	3 cut(s)	466, 735, 827
MluCI	AATT	3 cut(s)	288, 454, 566
MluNI	TGGCCA	3 cut(s)	466, 735, 827
MlyI	GAGTC	2 cut(s)	13, 136
MnlI	CCTC	6 cut(s)	14, 79, 237, 287, 519, 609
Mox20I	TGGCCA	3 cut(s)	466, 735, 827
Mph1103I	ATGCAT	1 cut(s)	650
MroNI	GCCGGC	1 cut(s)	169
MscI	TGGCCA	3 cut(s)	466, 735, 827
MseI	TTAA	3 cut(s)	12, 150, 233
MslI	CAYNNNNRTG	1 cut(s)	120
Msp20I	TGGCCA	3 cut(s)	466, 735, 827
MspI	CCGG	1 cut(s)	170
MwoI	GCNNNNNNNGC	1 cut(s)	344
NaeI	GCCGGC	1 cut(s)	171
NcoI	CCATGG	1 cut(s)	447
NdeII	GATC	2 cut(s)	54, 789
NgoMIV	GCCGGC	1 cut(s)	169
NlaIII	CATG	6 cut(s)	96, 119, 451, 509, 726, 801
NlaIV	GGNNCC	2 cut(s)	67, 141
NmuCI	GTSAC	3 cut(s)	110, 259, 802
NsiI	ATGCAT	1 cut(s)	650
PdiI	GCCGGC	1 cut(s)	171
PfeI	GAWTC	1 cut(s)	24
PkrI	GCNGC	1 cut(s)	346
PleI	GAGTC	2 cut(s)	12, 135
PpsI	GAGTC	2 cut(s)	12, 135
PspEI	GGTNACC	1 cut(s)	201
PspN4I	GGNNCC	2 cut(s)	67, 141
PspPI	GGNCC	1 cut(s)	663
RsaI	GTAC	4 cut(s)	87, 141, 298, 306
RsaNI	GTAC	4 cut(s)	86, 140, 297, 305
RseI	CAYNNNNRTG	1 cut(s)	120
SaqAI	TTAA	3 cut(s)	12, 150, 233
SatI	GCNGC	1 cut(s)	345
Sau3AI	GATC	2 cut(s)	54, 789
Sau96I	GGNCC	1 cut(s)	663
SchI	GAGTC	2 cut(s)	13, 136
SduI	GDGCHC	1 cut(s)	340
SetI	ASST	9 cut(s)	71, 232, 248, 298, 627, 684, 756, 781, 852
SfaNI	GCATC	3 cut(s)	167, 635, 657
SmiMI	CAYNNNNRTG	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
Sse9I	AATT	3 cut(s)	288, 454, 566
SsiI	CCGC	3 cut(s)	18, 401, 560
SspI	AATATT	1 cut(s)	81
SspMI	CTAG	3 cut(s)	240, 876, 882
StyI	CCWWGG	2 cut(s)	447, 639
TaaI	ACNGT	2 cut(s)	147, 388
TaiI	ACGT	2 cut(s)	756, 781
TaqI	TCGA	1 cut(s)	792
TasI	AATT	3 cut(s)	288, 454, 566
TatI	WGTACW	1 cut(s)	304
TfiI	GAWTC	1 cut(s)	24
Tru1I	TTAA	3 cut(s)	12, 150, 233
Tru9I	TTAA	3 cut(s)	12, 150, 233
TscAI	CASTG	2 cut(s)	393, 658
TseFI	GTSAC	3 cut(s)	110, 259, 802
TseI	GCWGC	1 cut(s)	344
Tsp45I	GTSAC	3 cut(s)	110, 259, 802
TspDTI	ATGAA	4 cut(s)	132, 708, 828, 846
TspGWI	ACGGA	2 cut(s)	168, 401
TspRI	CASTG	2 cut(s)	393, 658
XapI	RAATTY	1 cut(s)	566
XspI	CTAG	3 cut(s)	240, 876, 882
Zsp2I	ATGCAT	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.