Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0000722

Physical Location & Seq

Genomic Coordinates Reverse (-)

34406658 .. 34411421

Gene Structure 4764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG320800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGAATTTCCATTTCCATTTGAATCTGCTTCCTCAAATGCAGAAGAGATCGATCCCGCTTCCACTGTTTCAGAGAGCTTGCATGCATCTCTCTCCAAATCTTTGGTTCTCTTCTATCCACTCGCTGGCCGAATGAAAACCGCTGCCTCCGTTCACTGCAACGATGAAGGAGCTCATTTTCTTGAGGCCCTAGTTAACTGCCAGCTCTCGGATTTACTTAAAGTTCCTGAGCATAAGTTGCTTAACAACCTTATCCCCGAGTTTGAGCCTAAAACAGTTCAGTTAGGGTTGGGTTCAGTTGTTTTAATTGTTCAAGTGAGTCTTTTCAACTGTGGAGGAATAGCTGTTGCTGCGTCCCCAATACACAAGATCGGAGATGCCGGCGCACATTACAAATTTATACAAACATGGGCAGCCATACATCGTGGTGAATCCGATCAACTAGTGCAACCGGAGTTTAATGGAGCATCTGTGCTGCCTCCCAGAGAATTGTCACTCCCAAACAACTTGGGATTAATCCCAAATCAAAAGTTGACAACAAGGAGGTTCGTGTTTGATGTCACAAATATTGCAAGTCTCAAGGCCAAAATCGGAGGCACACATGTAGAACTTGTTTCGGCAATTATCCTCAGAAGTGCTCTTGCTGCTTCTCATAAATCGAAGCCGGAGACTACTTCAAGCACAAATGTGTTGTCCCAAATTGTAAGTTTCGGCAACAGAATAGTCCCCGCGGTAGCACCAAATGTCATGGGTAATTGGTTTTGGTCGGTTCAAGTGTTCAATCGGTCAGAGCACCGCCCTATCAAGGCGGAAGCTGCGGGTTCGAGCCCCGTCAGTCCTGACCTAGGATCCGCTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

286

Amino Acids

30.68

Weight (kDa)

6.36

Isoelectric Point (pI)

38.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	20 - 263	2.9e-38	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000722)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27601 FvH4_4g17130
malus_domestica	MD07G1048300.v1.1 MD07G1095200.v1.1 MD07G1095500.v1.1 MD07G1095700.v1.1 MD07G1096300.v1.1 MD07G1096400.v1.1 MD09G1062300.v1.1 MD14G1082000.v1.1
prunus_persica	Prupe.7G029300_v2.0.a1 Prupe.7G030000_v2.0.a1
pyrus_communis	pycom07g07870 pycom07g07910 pycom07g07950 pycom111g05260 pycom14g07130 pycom17g05610
rosa_chinensis	RchiOBHm_Chr1g0325581 RchiOBHm_Chr3g0487911 RchiOBHm_Chr3g0487931 RchiOBHm_Chr3g0487961 RchiOBHm_Chr3g0487971 RchiOBHm_Chr7g0216431 RchiOBHm_Chr7g0216441
rosa_laevigata	RLG00000002570 RLG00000003149 RLG00000022955 RLG00000022960 RLG00000022961 RLG00000022964 RLG00000022965 RLG00000022966 RLG00000030119 RLG00000030129
rosa_multiflora	Rmu_sc0004155.1_g000011 Rmu_sc0004448.1_g000015 Rmu_sc0004448.1_g000025 Rmu_sc0004448.1_g000031 Rmu_sc0006722.1_g000006
rosa_roxburghii	Rroxscaffold_3G00243230 Rroxscaffold_3G00243240 Rroxscaffold_3G00250720 Rroxscaffold_3G00252280 Rroxscaffold_4G00324640 Rroxscaffold_6G00394390 Rroxscaffold_6G00394400 Rroxscaffold_6G00394430 Rroxscaffold_6G00394440
rosa_rugosa	Rorug01G0053000 Rorug03G0237300 Rorug03G0237400 Rorug07G0160300 Rorug07G0160300 Rorug07G0160300
rosa_samantha	Rh1BG056200 Rh1DG073800 Rh3AG285000 Rh3AG285200 Rh3AG285400 Rh3CG320500 Rh3CG320800 Rh3DG318900 Rh3DG319000 Rh7AG299400 Rh7AG299500 Rh7BG290900 Rh7DG300800
rosa_wichuraiana	Rw0G004660 Rw0G004670 Rw1G005690 Rw3G025280 Rw7G025450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	125
AccII	CGCG	1 cut(s)	731
AciI	CCGC	8 cut(s)	57, 141, 729, 731, 796, 809, 818, 852
AclWI	GGATC	3 cut(s)	47, 843, 856
AcoI	YGGCCR	1 cut(s)	127
AcsI	RAATTY	2 cut(s)	5, 395
AfiI	CCNNNNNNNGG	4 cut(s)	125, 208, 805, 845
AflIII	ACRYGT	1 cut(s)	601
AgsI	TTSAA	6 cut(s)	23, 314, 328, 678, 773, 781
AhlI	ACTAGT	1 cut(s)	442
AleI	CACNNNNGTG	1 cut(s)	686
AluBI	AGCT	5 cut(s)	78, 173, 205, 344, 815
AluI	AGCT	5 cut(s)	78, 173, 205, 344, 815
Alw21I	GWGCWC	3 cut(s)	175, 640, 795
Alw26I	GTCTC	2 cut(s)	581, 662
AlwI	GGATC	3 cut(s)	47, 843, 856
Ama87I	CYCGRG	1 cut(s)	257
AoxI	GGCC	3 cut(s)	127, 186, 582
ApeKI	GCWGC	6 cut(s)	143, 350, 413, 475, 644, 815
ApoI	RAATTY	2 cut(s)	5, 395
ArsI	GACNNNNNNTTYG	2 cut(s)	677, 709
AseI	ATTAAT	1 cut(s)	515
AspA2I	CCTAGG	1 cut(s)	844
AspLEI	GCGC	1 cut(s)	386
AspS9I	GGNCC	1 cut(s)	187
AsuHPI	GGTGA	1 cut(s)	440
AvaI	CYCGRG	1 cut(s)	257
AvrII	CCTAGG	1 cut(s)	844
BamHI	GGATCC	1 cut(s)	848
BanII	GRGCYC	2 cut(s)	175, 830
Bbv12I	GWGCWC	3 cut(s)	175, 640, 795
BbvI	GCAGC	6 cut(s)	130, 337, 425, 462, 631, 802
BcoDI	GTCTC	2 cut(s)	581, 662
BcuI	ACTAGT	1 cut(s)	442
BfaI	CTAG	3 cut(s)	191, 443, 845
BisI	GCNGC	6 cut(s)	144, 351, 414, 476, 645, 816
BlnI	CCTAGG	1 cut(s)	844
BlsI	GCNGC	6 cut(s)	145, 352, 415, 477, 646, 817
BmeT110I	CYCGRG	1 cut(s)	257
BmgT120I	GGNCC	1 cut(s)	187
BmiI	GGNNCC	1 cut(s)	850
BmsI	GCATC	3 cut(s)	95, 367, 476
Bpu10I	CCTNAGC	1 cut(s)	228
BpuEI	CTTGAG	2 cut(s)	203, 563
Bsa29I	ATCGAT	1 cut(s)	51
BsaJI	CCNNGG	2 cut(s)	729, 844
BsaWI	WCCGGW	1 cut(s)	451
BsaXI	ACNNNNNCTCC	2 cut(s)	456, 486
Bsc4I	CCNNNNNNNGG	4 cut(s)	125, 208, 805, 845
Bse118I	RCCGGY	1 cut(s)	380
BseCI	ATCGAT	1 cut(s)	51
BseDI	CCNNGG	2 cut(s)	729, 844
BseLI	CCNNNNNNNGG	4 cut(s)	125, 208, 805, 845
BseMII	CTCAG	2 cut(s)	219, 643
BseXI	GCAGC	6 cut(s)	130, 337, 425, 462, 631, 802
Bsh1236I	CGCG	1 cut(s)	731
BshFI	GGCC	3 cut(s)	129, 188, 584
BshVI	ATCGAT	1 cut(s)	51
BsiHKAI	GWGCWC	3 cut(s)	175, 640, 795
BsiHKCI	CYCGRG	1 cut(s)	257
BsiSI	CCGG	3 cut(s)	381, 452, 665
BslFI	GGGAC	3 cut(s)	340, 679, 710
BslI	CCNNNNNNNGG	4 cut(s)	125, 208, 805, 845
BsmAI	GTCTC	2 cut(s)	581, 662
BsmFI	GGGAC	3 cut(s)	340, 679, 710
BsnI	GGCC	3 cut(s)	129, 188, 584
BsoBI	CYCGRG	1 cut(s)	257
Bsp1286I	GDGCHC	4 cut(s)	175, 640, 795, 830
Bsp143I	GATC	5 cut(s)	48, 52, 369, 436, 848
BspACI	CCGC	8 cut(s)	57, 141, 729, 731, 796, 809, 818, 852
BspANI	GGCC	3 cut(s)	129, 188, 584
BspCNI	CTCAG	2 cut(s)	220, 642
BspDI	ATCGAT	1 cut(s)	51
BspFNI	CGCG	1 cut(s)	731
BspLI	GGNNCC	1 cut(s)	850
BspPI	GGATC	3 cut(s)	47, 843, 856
BsrFI	RCCGGY	1 cut(s)	380
BssAI	RCCGGY	1 cut(s)	380
BssECI	CCNNGG	2 cut(s)	729, 844
BssMI	GATC	5 cut(s)	48, 52, 369, 436, 848
BssT1I	CCWWGG	1 cut(s)	844
Bst4CI	ACNGT	3 cut(s)	67, 277, 332
Bst6I	CTCTTC	2 cut(s)	39, 116
BstAPI	GCANNNNNTGC	1 cut(s)	238
BstC8I	GCNNGC	5 cut(s)	80, 84, 127, 203, 382
BstDEI	CTNAG	2 cut(s)	228, 629
BstDSI	CCRYGG	1 cut(s)	729
BstENI	CCTNNNNNAGG	1 cut(s)	843
BstFNI	CGCG	1 cut(s)	731
BstHHI	GCGC	1 cut(s)	386
BstKTI	GATC	5 cut(s)	51, 55, 372, 439, 851
BstMAI	GTCTC	2 cut(s)	581, 662
BstMBI	GATC	5 cut(s)	48, 52, 369, 436, 848
BstMWI	GCNNNNNNNGC	4 cut(s)	238, 350, 644, 815
BstNSI	RCATGY	2 cut(s)	86, 605
BstUI	CGCG	1 cut(s)	731
BstV1I	GCAGC	6 cut(s)	130, 337, 425, 462, 631, 802
BstX2I	RGATCY	1 cut(s)	848
BstXI	CCANNNNNNTGG	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	848
Bsu15I	ATCGAT	1 cut(s)	51
BsuRI	GGCC	3 cut(s)	129, 188, 584
BsuTUI	ATCGAT	1 cut(s)	51
BtgI	CCRYGG	1 cut(s)	729
BtsI	GCAGTG	1 cut(s)	154
BtsIMutI	CAGTG	2 cut(s)	63, 154
Cac8I	GCNNGC	5 cut(s)	80, 84, 127, 203, 382
CfoI	GCGC	1 cut(s)	386
Cfr10I	RCCGGY	1 cut(s)	380
Cfr13I	GGNCC	1 cut(s)	187
Cfr42I	CCGCGG	1 cut(s)	732
ClaI	ATCGAT	1 cut(s)	51
CseI	GACGC	1 cut(s)	342
CviAII	CATG	4 cut(s)	83, 408, 602, 748
DdeI	CTNAG	2 cut(s)	228, 629
DpnI	GATC	5 cut(s)	50, 54, 371, 438, 850
DpnII	GATC	5 cut(s)	48, 52, 369, 436, 848
EaeI	YGGCCR	1 cut(s)	127
Eam1104I	CTCTTC	2 cut(s)	39, 116
EarI	CTCTTC	2 cut(s)	39, 116
EciI	GGCGGA	1 cut(s)	824
Ecl136II	GAGCTC	1 cut(s)	173
Eco130I	CCWWGG	1 cut(s)	844
Eco24I	GRGCYC	2 cut(s)	175, 830
Eco53kI	GAGCTC	1 cut(s)	173
Eco88I	CYCGRG	1 cut(s)	257
EcoICRI	GAGCTC	1 cut(s)	173
EcoNI	CCTNNNNNAGG	1 cut(s)	843
EcoO109I	RGGNCCY	1 cut(s)	187
EcoT14I	CCWWGG	1 cut(s)	844
EcoT22I	ATGCAT	1 cut(s)	88
EcoT38I	GRGCYC	2 cut(s)	175, 830
ErhI	CCWWGG	1 cut(s)	844
FaeI	CATG	4 cut(s)	86, 411, 605, 751
FaiI	YATR	8 cut(s)	84, 234, 401, 409, 419, 603, 654, 749
FalI	AAGNNNNNCTT	2 cut(s)	306, 338
FaqI	GGGAC	3 cut(s)	340, 679, 710
FatI	CATG	4 cut(s)	82, 407, 601, 747
FauI	CCCGC	3 cut(s)	64, 736, 811
Fnu4HI	GCNGC	6 cut(s)	144, 351, 414, 476, 645, 816
FriOI	GRGCYC	2 cut(s)	175, 830
Fsp4HI	GCNGC	6 cut(s)	144, 351, 414, 476, 645, 816
FspBI	CTAG	3 cut(s)	191, 443, 845
GlaI	GCGC	1 cut(s)	385
GluI	GCNGC	6 cut(s)	144, 351, 414, 476, 645, 816
HaeIII	GGCC	3 cut(s)	129, 188, 584
HapII	CCGG	3 cut(s)	381, 452, 665
HgaI	GACGC	1 cut(s)	342
HhaI	GCGC	1 cut(s)	386
Hin1II	CATG	4 cut(s)	86, 411, 605, 751
Hin6I	GCGC	1 cut(s)	384
HinP1I	GCGC	1 cut(s)	384
HincII	GTYRAC	2 cut(s)	196, 534
HindII	GTYRAC	2 cut(s)	196, 534
HinfI	GANTC	3 cut(s)	23, 319, 431
HpaI	GTTAAC	1 cut(s)	196
HpaII	CCGG	3 cut(s)	381, 452, 665
HphI	GGTGA	1 cut(s)	440
Hpy166II	GTNNAC	3 cut(s)	154, 196, 534
Hpy188I	TCNGA	7 cut(s)	73, 211, 374, 436, 593, 632, 790
Hpy188III	TCNNGA	3 cut(s)	182, 227, 839
Hpy8I	GTNNAC	3 cut(s)	154, 196, 534
HpyAV	CCTTC	1 cut(s)	161
HpyCH4III	ACNGT	3 cut(s)	67, 277, 332
HpyCH4V	TGCA	6 cut(s)	41, 82, 86, 159, 448, 572
HpyF10VI	GCNNNNNNNGC	4 cut(s)	238, 350, 644, 815
HpyF3I	CTNAG	2 cut(s)	228, 629
Hsp92II	CATG	4 cut(s)	86, 411, 605, 751
HspAI	GCGC	1 cut(s)	384
KroI	GCCGGC	1 cut(s)	380
KroNI	GCCGGC	1 cut(s)	382
KspAI	GTTAAC	1 cut(s)	196
KspI	CCGCGG	1 cut(s)	732
Kzo9I	GATC	5 cut(s)	48, 52, 369, 436, 848
LmnI	GCTCC	2 cut(s)	170, 464
LpnPI	CCDG	8 cut(s)	111, 215, 240, 394, 465, 496, 678, 852
Lsp1109I	GCAGC	6 cut(s)	130, 337, 425, 462, 631, 802
LweI	GCATC	3 cut(s)	95, 367, 476
MaeI	CTAG	3 cut(s)	191, 443, 845
MaeIII	GTNAC	2 cut(s)	492, 559
MalI	GATC	5 cut(s)	50, 54, 371, 438, 850
MboI	GATC	5 cut(s)	48, 52, 369, 436, 848
MboII	GAAGA	2 cut(s)	56, 103
MflI	RGATCY	1 cut(s)	848
MhlI	GDGCHC	4 cut(s)	175, 640, 795, 830
MluCI	AATT	7 cut(s)	5, 306, 395, 488, 621, 699, 754
MlyI	GAGTC	1 cut(s)	328
MnlI	CCTC	8 cut(s)	43, 157, 178, 329, 489, 537, 587, 638
Mph1103I	ATGCAT	1 cut(s)	88
MroNI	GCCGGC	1 cut(s)	380
MseI	TTAA	6 cut(s)	195, 219, 243, 305, 459, 515
MslI	CAYNNNNRTG	2 cut(s)	426, 686
MspA1I	CMGCKG	3 cut(s)	143, 731, 854
MspI	CCGG	3 cut(s)	381, 452, 665
MvnI	CGCG	1 cut(s)	731
MwoI	GCNNNNNNNGC	4 cut(s)	238, 350, 644, 815
NaeI	GCCGGC	1 cut(s)	382
NdeII	GATC	5 cut(s)	48, 52, 369, 436, 848
NgoMIV	GCCGGC	1 cut(s)	380
NlaIII	CATG	4 cut(s)	86, 411, 605, 751
NlaIV	GGNNCC	1 cut(s)	850
NmuCI	GTSAC	2 cut(s)	492, 559
NsiI	ATGCAT	1 cut(s)	88
NspI	RCATGY	2 cut(s)	86, 605
OliI	CACNNNNGTG	1 cut(s)	686
PaeI	GCATGC	1 cut(s)	86
PciI	ACATGT	1 cut(s)	601
PdiI	GCCGGC	1 cut(s)	382
PfeI	GAWTC	2 cut(s)	23, 431
PflMI	CCANNNNNTGG	1 cut(s)	125
PkrI	GCNGC	6 cut(s)	145, 352, 415, 477, 646, 817
PleI	GAGTC	1 cut(s)	327
PpsI	GAGTC	1 cut(s)	327
PscI	ACATGT	1 cut(s)	601
PshBI	ATTAAT	1 cut(s)	515
Psp124BI	GAGCTC	1 cut(s)	175
PspN4I	GGNNCC	1 cut(s)	850
PspPI	GGNCC	1 cut(s)	187
PsuI	RGATCY	1 cut(s)	848
RseI	CAYNNNNRTG	2 cut(s)	426, 686
SacI	GAGCTC	1 cut(s)	175
SacII	CCGCGG	1 cut(s)	732
SaqAI	TTAA	6 cut(s)	195, 219, 243, 305, 459, 515
SatI	GCNGC	6 cut(s)	144, 351, 414, 476, 645, 816
Sau3AI	GATC	5 cut(s)	48, 52, 369, 436, 848
Sau96I	GGNCC	1 cut(s)	187
SchI	GAGTC	1 cut(s)	328
SduI	GDGCHC	4 cut(s)	175, 640, 795, 830
SetI	ASST	8 cut(s)	80, 175, 207, 252, 346, 548, 817, 846
SfaNI	GCATC	3 cut(s)	95, 367, 476
Sfr303I	CCGCGG	1 cut(s)	732
SgrBI	CCGCGG	1 cut(s)	732
SmiMI	CAYNNNNRTG	2 cut(s)	426, 686
SmlI	CTYRAG	2 cut(s)	182, 578
SmoI	CTYRAG	2 cut(s)	182, 578
SpeI	ACTAGT	1 cut(s)	442
SphI	GCATGC	1 cut(s)	86
Sse9I	AATT	7 cut(s)	5, 306, 395, 488, 621, 699, 754
SsiI	CCGC	8 cut(s)	57, 141, 729, 731, 796, 809, 818, 852
SspI	AATATT	1 cut(s)	568
SspMI	CTAG	3 cut(s)	191, 443, 845
SstI	GAGCTC	1 cut(s)	175
StyI	CCWWGG	1 cut(s)	844
TaaI	ACNGT	3 cut(s)	67, 277, 332
TaqI	TCGA	3 cut(s)	51, 659, 824
TaqII	GACCGA	1 cut(s)	774
TasI	AATT	7 cut(s)	5, 306, 395, 488, 621, 699, 754
TfiI	GAWTC	2 cut(s)	23, 431
Tru1I	TTAA	6 cut(s)	195, 219, 243, 305, 459, 515
Tru9I	TTAA	6 cut(s)	195, 219, 243, 305, 459, 515
TscAI	CASTG	2 cut(s)	70, 161
TseFI	GTSAC	2 cut(s)	492, 559
TseI	GCWGC	6 cut(s)	143, 350, 413, 475, 644, 815
Tsp45I	GTSAC	2 cut(s)	492, 559
TspDTI	ATGAA	2 cut(s)	149, 180
TspGWI	ACGGA	1 cut(s)	139
TspRI	CASTG	2 cut(s)	70, 161
Van91I	CCANNNNNTGG	1 cut(s)	125
VspI	ATTAAT	1 cut(s)	515
XagI	CCTNNNNNAGG	1 cut(s)	843
XapI	RAATTY	2 cut(s)	5, 395
XceI	RCATGY	2 cut(s)	86, 605
XmaJI	CCTAGG	1 cut(s)	844
XspI	CTAG	3 cut(s)	191, 443, 845
Zsp2I	ATGCAT	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.