RLG00000003149

BAHD acyltransferase At5g47980-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
44889070 .. 44889498
429 bp
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UTR
Exon/CDS
Intron
RLM00000003149

Sequence Viewer

Length: 429 bp
ATGGATATTCAGAGTAGTCCAGAAATGAAGAAGGTTGAAGTTGTGTCAACAAAGATGATTAAACCATCCTCTCCAACTCAACTAATGCCTTCTCTCCACGGAGCATTAATCGTCTTCTTCTACACCTCCTGTAGGAACACTACTAGTAGTTCGAAACAAGTTTCGAGTTCGGACAAAATATATACGTCCAAAACCCTAGTTCGCTTCTACCCTGTAGCTGGGAAGTTGAAAGATGCAGTCATAATCGAGTGCAACGATCAAGAAGCTTATTTCGTACGGGCTCAAACCAAGTGCAGCCTTTCACATTTTCTTAACAAACCCGACGCAAAGTTTCTTAAAATCCTGATTCCCACAGATGATGCCAAAAGCAACGATTCCAACTCACTTTTTTTAACTGTAGATCGAGGGATTGCTATTGCTAGCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

143

Amino Acids

15.71

Weight (kDa)

9.06

Isoelectric Point (pI)

47.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 11 - 129 1.3e-15 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 276
AfiI CCNNNNNNNGG 2 cut(s) 132, 218
AgsI TTSAA 2 cut(s) 38, 229
AhlI ACTAGT 1 cut(s) 143
AluBI AGCT 3 cut(s) 218, 266, 423
AluI AGCT 3 cut(s) 218, 266, 423
ApeKI GCWGC 1 cut(s) 294
AseI ATTAAT 1 cut(s) 107
AsuII TTCGAA 1 cut(s) 152
AsuNHI GCTAGC 1 cut(s) 419
BanII GRGCYC 1 cut(s) 283
BbsI GAAGAC 1 cut(s) 106
BbvI GCAGC 1 cut(s) 306
BccI CCATC 1 cut(s) 73
BcuI ACTAGT 1 cut(s) 143
BfaI CTAG 3 cut(s) 144, 197, 420
BfmI CTRYAG 3 cut(s) 130, 213, 396
BisI GCNGC 1 cut(s) 295
BlsI GCNGC 1 cut(s) 296
BmsI GCATC 2 cut(s) 223, 349
BmtI GCTAGC 1 cut(s) 423
BpiI GAAGAC 1 cut(s) 106
Bpu14I TTCGAA 1 cut(s) 152
BsaJI CCNNGG 1 cut(s) 97
Bsc4I CCNNNNNNNGG 2 cut(s) 132, 218
BseDI CCNNGG 1 cut(s) 97
BseGI GGATG 1 cut(s) 65
BseLI CCNNNNNNNGG 2 cut(s) 132, 218
BseXI GCAGC 1 cut(s) 306
BseYI CCCAGC 1 cut(s) 218
BsgI GTGCAG 1 cut(s) 313
BsiWI CGTACG 1 cut(s) 274
BslI CCNNNNNNNGG 2 cut(s) 132, 218
Bsp119I TTCGAA 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 283
Bsp143I GATC 2 cut(s) 256, 400
BspOI GCTAGC 1 cut(s) 423
BspT104I TTCGAA 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 97
BssMI GATC 2 cut(s) 256, 400
Bst4CI ACNGT 1 cut(s) 397
BstBI TTCGAA 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 421
BstDSI CCRYGG 1 cut(s) 97
BstENI CCTNNNNNAGG 1 cut(s) 130
BstF5I GGATG 1 cut(s) 65
BstKTI GATC 2 cut(s) 259, 403
BstMBI GATC 2 cut(s) 256, 400
BstSFI CTRYAG 3 cut(s) 130, 213, 396
BstV1I GCAGC 1 cut(s) 306
BstV2I GAAGAC 1 cut(s) 106
BtgI CCRYGG 1 cut(s) 97
BtsCI GGATG 1 cut(s) 65
Cac8I GCNNGC 1 cut(s) 421
CseI GACGC 1 cut(s) 332
Csp6I GTAC 1 cut(s) 275
CviJI RGCY 5 cut(s) 218, 266, 281, 297, 423
CviKI_1 RGCY 5 cut(s) 218, 266, 281, 297, 423
CviQI GTAC 1 cut(s) 275
DpnI GATC 2 cut(s) 258, 402
DpnII GATC 2 cut(s) 256, 400
Eco24I GRGCYC 1 cut(s) 283
EcoNI CCTNNNNNAGG 1 cut(s) 130
EcoT38I GRGCYC 1 cut(s) 283
FaiI YATR 3 cut(s) 181, 183, 242
Fnu4HI GCNGC 1 cut(s) 295
FokI GGATG 1 cut(s) 52
FriOI GRGCYC 1 cut(s) 283
Fsp4HI GCNGC 1 cut(s) 295
FspBI CTAG 3 cut(s) 144, 197, 420
GluI GCNGC 1 cut(s) 295
GsaI CCCAGC 1 cut(s) 222
HgaI GACGC 1 cut(s) 332
HincII GTYRAC 1 cut(s) 48
HindII GTYRAC 1 cut(s) 48
HindIII AAGCTT 1 cut(s) 264
HinfI GANTC 2 cut(s) 346, 374
Hpy166II GTNNAC 1 cut(s) 48
Hpy188I TCNGA 2 cut(s) 12, 172
Hpy188III TCNNGA 3 cut(s) 20, 260, 343
Hpy8I GTNNAC 1 cut(s) 48
Hpy99I CGWCG 1 cut(s) 326
HpyAV CCTTC 2 cut(s) 25, 99
HpyCH4III ACNGT 1 cut(s) 397
HpyCH4IV ACGT 1 cut(s) 185
HpyCH4V TGCA 3 cut(s) 236, 252, 294
HpySE526I ACGT 1 cut(s) 185
Kzo9I GATC 2 cut(s) 256, 400
LmnI GCTCC 1 cut(s) 101
LpnPI CCDG 5 cut(s) 33, 142, 204, 225, 356
Lsp1109I GCAGC 1 cut(s) 306
LweI GCATC 2 cut(s) 223, 349
MaeI CTAG 3 cut(s) 144, 197, 420
MaeII ACGT 1 cut(s) 185
MalI GATC 2 cut(s) 258, 402
MboI GATC 2 cut(s) 256, 400
MboII GAAGA 3 cut(s) 40, 106, 109
MhlI GDGCHC 1 cut(s) 283
MmeI TCCRAC 2 cut(s) 98, 402
MnlI CCTC 3 cut(s) 79, 136, 398
MseI TTAA 5 cut(s) 60, 107, 312, 336, 392
NdeII GATC 2 cut(s) 256, 400
NheI GCTAGC 1 cut(s) 419
NspV TTCGAA 1 cut(s) 152
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PfeI GAWTC 2 cut(s) 346, 374
Pfl23II CGTACG 1 cut(s) 274
PkrI GCNGC 1 cut(s) 296
PshBI ATTAAT 1 cut(s) 107
PspFI CCCAGC 1 cut(s) 218
PspLI CGTACG 1 cut(s) 274
RsaI GTAC 1 cut(s) 276
RsaNI GTAC 1 cut(s) 275
SaqAI TTAA 5 cut(s) 60, 107, 312, 336, 392
SatI GCNGC 1 cut(s) 295
Sau3AI GATC 2 cut(s) 256, 400
SduI GDGCHC 1 cut(s) 283
SetI ASST 6 cut(s) 36, 128, 188, 220, 268, 425
SfaNI GCATC 2 cut(s) 223, 349
SfcI CTRYAG 3 cut(s) 130, 213, 396
SfuI TTCGAA 1 cut(s) 152
SpeI ACTAGT 1 cut(s) 143
SspMI CTAG 3 cut(s) 144, 197, 420
TaaI ACNGT 1 cut(s) 397
TaiI ACGT 1 cut(s) 188
TaqI TCGA 4 cut(s) 152, 164, 246, 403
TfiI GAWTC 2 cut(s) 346, 374
Tru1I TTAA 5 cut(s) 60, 107, 312, 336, 392
Tru9I TTAA 5 cut(s) 60, 107, 312, 336, 392
TseI GCWGC 1 cut(s) 294
TspDTI ATGAA 1 cut(s) 41
TspGWI ACGGA 1 cut(s) 114
VspI ATTAAT 1 cut(s) 107
XagI CCTNNNNNAGG 1 cut(s) 130
XspI CTAG 3 cut(s) 144, 197, 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.