RLG00000022955

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000722
Physical Location & Seq
Forward (+)
15803796 .. 15805130
1335 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022955

Sequence Viewer

Length: 1335 bp
ATGGGTTCACCAGCAACATGCACCCATTCACCTGTAAATATCACCTCAAGAAAGATAATTAGACCCTCGTCTTCAACTCCTCATCACCAAAGAACTCTCAACCTCTCTCTTTTGGACCAACTCTTCCCTCCTACCTTATACCCTACTATCATATATTTCTACTCCAGTGATCATTTTCCTTCAAATAATGTTTCGGAGAGCTTACAAACATCGCTATCCAAGGCTTTGGTTCACTTTTATCCCCTGGCAGGGCGACTAAATGGCCCTGCTTCCATTGACTGCAATGATGAAGGGGCTTATTTTCTTGAGGCCCAAGTCAACTGCCAGCTCTCGGACTTGCTTAAACTTCCTGAACACAGGTTACTCAACAACCTCATCCCAGAGTTTGATCCTCAAACTGCCCCTTCCGCCTTAGGTTATGCAGTTTTGCTTGTCCAAATGAGTCATTTTAACTGCGGAGGAATCGCCCTTGCCGTGTCGCTGTCGCACAAGATCGCAGATGCAACCTCATGTCAAACATTTGTACGAGCATGGGCAGAAATAAATCATGATAATGAATATGATAGTCAACTAATGGTACCACAGTTTAACGGAGCCTCACTGTTGCCGGCTAAAGACTCCTTCGTAAACAACTTAGGGTTACCGAAGTATCAAAGTTTAGCTACTAGGAGGTTCGTGTTTGATGTCACTAAGATTGCCAATCTCAAGGCCAAAATAGGAGGTACGAACGTACAACTTGTTTCAGCAATCATCTTGAAAAGTGCTCGTGCTGCTTCTTATAAATCTAAGCCGGAGACCAGTCCAAGTACAGCAGTGTTGTCGCAAATGGTAAATCTCCGTAGAAGTATGGGTTCGGTGGTACAGGAAAATGCCATGGGAAATTGGTTTTGGCCACTTCAAATAGTATTCAAACCAAACGAGACGGAACTACATGAGTTGGTGGCAAATATGAGGAGAGAAATAACAGACTTCTACAAAGAGAAGGCGGGCAAATTCAAAGGGGAAGATGGGTTTTTGGTGATGTCTGAGTCGTTTAGAGAGAGGGGCGAGCTTTATAGAAACACCAAGGGATGCATCAGTGTTTACAGAGCCACAAGTTTGTTCAAGCTCCCTGTATATGAAATTGATTTTGGGCGGGGACAGCCAACATGGGTTACTAGCCAAAGCAACCAGAAGAACATATTTGTGTTGATTGATACAAAACGTGGCGATGGGATCGAAGCATGGGTGACACTCGATGAAGAAGAAATGGCCATATTTGAGACTGATGAGGAGCTCCTTTCATTCGCTTCTTTAAACCCCAGTGCTAGTGTCAATCATCACTCTCGTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

445

Amino Acids

49.52

Weight (kDa)

6.47

Isoelectric Point (pI)

44.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 11 - 426 1.3e-74 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 780
Acc65I GGTACC 1 cut(s) 577
AccB1I GGYRCC 1 cut(s) 577
AciI CCGC 4 cut(s) 408, 456, 986, 1135
AclWI GGATC 2 cut(s) 383, 1223
AcoI YGGCCR 2 cut(s) 890, 1251
AcsI RAATTY 1 cut(s) 992
AfaI GTAC 6 cut(s) 525, 579, 724, 732, 808, 861
AfiI CCNNNNNNNGG 3 cut(s) 248, 249, 331
AgsI TTSAA 7 cut(s) 75, 183, 757, 899, 910, 997, 1105
AjnI CCWGG 1 cut(s) 243
AjuI GAANNNNNNNTTGG 4 cut(s) 871, 903, 1113, 1145
AluBI AGCT 6 cut(s) 201, 328, 662, 1051, 1108, 1276
AluI AGCT 6 cut(s) 201, 328, 662, 1051, 1108, 1276
Alw21I GWGCWC 2 cut(s) 766, 1278
Alw26I GTCTC 3 cut(s) 788, 914, 1256
AlwI GGATC 2 cut(s) 383, 1223
AoxI GGCC 5 cut(s) 262, 309, 708, 890, 1251
ApeKI GCWGC 1 cut(s) 770
ApoI RAATTY 1 cut(s) 992
Asp718I GGTACC 1 cut(s) 577
AspS9I GGNCC 3 cut(s) 115, 263, 310
AsuHPI GGTGA 5 cut(s) 21, 34, 77, 1030, 1240
AvaII GGWCC 1 cut(s) 115
AxyI CCTNAGG 1 cut(s) 412
BaeI ACNNNNGTAYC 6 cut(s) 569, 602, 632, 665, 714, 747
BalI TGGCCA 2 cut(s) 892, 1253
BanI GGYRCC 1 cut(s) 577
BanII GRGCYC 1 cut(s) 1278
BauI CACGAG 1 cut(s) 765
BbsI GAAGAC 1 cut(s) 63
Bbv12I GWGCWC 2 cut(s) 766, 1278
BbvI GCAGC 1 cut(s) 757
BccI CCATC 2 cut(s) 1001, 1205
BceAI ACGGC 1 cut(s) 458
BcgI CGANNNNNNTGC 2 cut(s) 801, 835
BciT130I CCWGG 1 cut(s) 245
BclI TGATCA 1 cut(s) 169
BcoDI GTCTC 3 cut(s) 788, 914, 1256
BfaI CTAG 3 cut(s) 666, 1158, 1308
BisI GCNGC 1 cut(s) 771
BlsI GCNGC 1 cut(s) 772
Bme1390I CCNGG 1 cut(s) 245
Bme18I GGWCC 1 cut(s) 115
BmgT120I GGNCC 3 cut(s) 115, 263, 310
BmiI GGNNCC 2 cut(s) 579, 595
BmrFI CCNGG 1 cut(s) 245
BmrI ACTGGG 1 cut(s) 1296
BmsI GCATC 3 cut(s) 490, 1061, 1083
BmuI ACTGGG 1 cut(s) 1296
BoxI GACNNNNGTC 1 cut(s) 67
BpiI GAAGAC 1 cut(s) 63
BpmI CTGGAG 1 cut(s) 148
BpuEI CTTGAG 3 cut(s) 31, 326, 689
BsaI GGTCTC 1 cut(s) 788
BsaJI CCNNGG 4 cut(s) 219, 243, 873, 1065
Bsc4I CCNNNNNNNGG 3 cut(s) 248, 249, 331
Bse118I RCCGGY 1 cut(s) 607
Bse1I ACTGG 3 cut(s) 165, 798, 1302
Bse21I CCTNAGG 1 cut(s) 412
Bse3DI GCAATG 1 cut(s) 289
BseBI CCWGG 1 cut(s) 245
BseDI CCNNGG 4 cut(s) 219, 243, 873, 1065
BseGI GGATG 2 cut(s) 375, 1076
BseLI CCNNNNNNNGG 3 cut(s) 248, 249, 331
BseMI GCAATG 1 cut(s) 289
BseMII CTCAG 1 cut(s) 1017
BseNI ACTGG 3 cut(s) 165, 798, 1302
BseRI GAGGAG 3 cut(s) 69, 967, 1286
BseXI GCAGC 1 cut(s) 757
BshFI GGCC 5 cut(s) 264, 311, 710, 892, 1253
BshNI GGYRCC 1 cut(s) 577
BsiHKAI GWGCWC 2 cut(s) 766, 1278
BsiSI CCGG 2 cut(s) 608, 791
BslFI GGGAC 1 cut(s) 1152
BslI CCNNNNNNNGG 3 cut(s) 248, 249, 331
BsmAI GTCTC 3 cut(s) 788, 914, 1256
BsmBI CGTCTC 1 cut(s) 914
BsmFI GGGAC 1 cut(s) 1152
BsnI GGCC 5 cut(s) 264, 311, 710, 892, 1253
Bso31I GGTCTC 1 cut(s) 788
Bsp1286I GDGCHC 2 cut(s) 766, 1278
Bsp143I GATC 4 cut(s) 169, 388, 492, 1215
Bsp19I CCATGG 1 cut(s) 873
BspACI CCGC 4 cut(s) 408, 456, 986, 1135
BspANI GGCC 5 cut(s) 264, 311, 710, 892, 1253
BspCNI CTCAG 1 cut(s) 1018
BspHI TCATGA 1 cut(s) 547
BspLI GGNNCC 2 cut(s) 579, 595
BspPI GGATC 2 cut(s) 383, 1223
BspT107I GGYRCC 1 cut(s) 577
BspTNI GGTCTC 1 cut(s) 788
BsrDI GCAATG 1 cut(s) 289
BsrFI RCCGGY 1 cut(s) 607
BsrI ACTGG 3 cut(s) 165, 798, 1302
BssAI RCCGGY 1 cut(s) 607
BssECI CCNNGG 4 cut(s) 219, 243, 873, 1065
BssMI GATC 4 cut(s) 169, 388, 492, 1215
BssSI CACGAG 1 cut(s) 765
BssT1I CCWWGG 3 cut(s) 219, 873, 1065
Bst2BI CACGAG 1 cut(s) 765
Bst2UI CCWGG 1 cut(s) 245
Bst4CI ACNGT 2 cut(s) 585, 603
Bst6I CTCTTC 1 cut(s) 128
BstC8I GCNNGC 4 cut(s) 326, 609, 988, 1049
BstDEI CTNAG 5 cut(s) 412, 634, 690, 786, 1026
BstDSI CCRYGG 1 cut(s) 873
BstEII GGTNACC 1 cut(s) 639
BstF5I GGATG 2 cut(s) 375, 1076
BstKTI GATC 4 cut(s) 172, 391, 495, 1218
BstMAI GTCTC 3 cut(s) 788, 914, 1256
BstMBI GATC 4 cut(s) 169, 388, 492, 1215
BstMWI GCNNNNNNNGC 3 cut(s) 407, 770, 1141
BstNI CCWGG 1 cut(s) 245
BstNSI RCATGY 1 cut(s) 21
BstPAI GACNNNNGTC 1 cut(s) 67
BstPI GGTNACC 1 cut(s) 639
BstSCI CCNGG 1 cut(s) 243
BstV1I GCAGC 1 cut(s) 757
BstV2I GAAGAC 1 cut(s) 63
BstXI CCANNNNNNTGG 1 cut(s) 226
Bsu36I CCTNAGG 1 cut(s) 412
BsuRI GGCC 5 cut(s) 264, 311, 710, 892, 1253
BtgI CCRYGG 1 cut(s) 873
BtgZI GCGATG 2 cut(s) 195, 1224
BtsCI GGATG 2 cut(s) 375, 1076
BtsI GCAGTG 1 cut(s) 819
BtsIMutI CAGTG 5 cut(s) 172, 599, 819, 1084, 1309
Cac8I GCNNGC 4 cut(s) 326, 609, 988, 1049
CciI TCATGA 1 cut(s) 547
Cfr10I RCCGGY 1 cut(s) 607
Cfr13I GGNCC 3 cut(s) 115, 263, 310
Csp6I GTAC 6 cut(s) 524, 578, 723, 731, 807, 860
CviAII CATG 8 cut(s) 18, 510, 531, 548, 874, 932, 1149, 1224
CviQI GTAC 6 cut(s) 524, 578, 723, 731, 807, 860
DdeI CTNAG 5 cut(s) 412, 634, 690, 786, 1026
DpnI GATC 4 cut(s) 171, 390, 494, 1217
DpnII GATC 4 cut(s) 169, 388, 492, 1215
DraI TTTAAA 1 cut(s) 1296
EaeI YGGCCR 2 cut(s) 890, 1251
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
EciI GGCGGA 1 cut(s) 397
Ecl136II GAGCTC 1 cut(s) 1276
Eco130I CCWWGG 3 cut(s) 219, 873, 1065
Eco24I GRGCYC 1 cut(s) 1278
Eco31I GGTCTC 1 cut(s) 788
Eco47I GGWCC 1 cut(s) 115
Eco53kI GAGCTC 1 cut(s) 1276
Eco81I CCTNAGG 1 cut(s) 412
Eco91I GGTNACC 1 cut(s) 639
EcoICRI GAGCTC 1 cut(s) 1276
EcoO65I GGTNACC 1 cut(s) 639
EcoRII CCWGG 1 cut(s) 243
EcoT14I CCWWGG 3 cut(s) 219, 873, 1065
EcoT22I ATGCAT 1 cut(s) 1076
EcoT38I GRGCYC 1 cut(s) 1278
ErhI CCWWGG 3 cut(s) 219, 873, 1065
Esp3I CGTCTC 1 cut(s) 914
FaeI CATG 8 cut(s) 21, 513, 534, 551, 877, 935, 1152, 1227
FaqI GGGAC 1 cut(s) 1152
FatI CATG 8 cut(s) 17, 509, 530, 547, 873, 931, 1148, 1223
FauI CCCGC 2 cut(s) 979, 1128
FbaI TGATCA 1 cut(s) 169
Fnu4HI GCNGC 1 cut(s) 771
FokI GGATG 2 cut(s) 362, 1083
FriOI GRGCYC 1 cut(s) 1278
Fsp4HI GCNGC 1 cut(s) 771
FspBI CTAG 3 cut(s) 666, 1158, 1308
GluI GCNGC 1 cut(s) 771
GsuI CTGGAG 1 cut(s) 148
HaeIII GGCC 5 cut(s) 264, 311, 710, 892, 1253
HapII CCGG 2 cut(s) 608, 791
Hin1II CATG 8 cut(s) 21, 513, 534, 551, 877, 935, 1152, 1227
HincII GTYRAC 2 cut(s) 319, 569
HindII GTYRAC 2 cut(s) 319, 569
HinfI GANTC 4 cut(s) 442, 462, 617, 1028
HpaII CCGG 2 cut(s) 608, 791
HphI GGTGA 5 cut(s) 21, 34, 77, 1030, 1240
Hpy166II GTNNAC 6 cut(s) 8, 232, 319, 569, 628, 1084
Hpy188I TCNGA 3 cut(s) 196, 334, 1027
Hpy188III TCNNGA 5 cut(s) 48, 305, 350, 548, 754
Hpy8I GTNNAC 6 cut(s) 8, 232, 319, 569, 628, 1084
HpyAV CCTTC 5 cut(s) 189, 284, 414, 631, 976
HpyCH4III ACNGT 2 cut(s) 585, 603
HpyCH4IV ACGT 2 cut(s) 729, 1204
HpyCH4V TGCA 5 cut(s) 21, 282, 422, 503, 1074
HpyF10VI GCNNNNNNNGC 3 cut(s) 407, 770, 1141
HpyF3I CTNAG 5 cut(s) 412, 634, 690, 786, 1026
HpySE526I ACGT 2 cut(s) 729, 1204
Hsp92II CATG 8 cut(s) 21, 513, 534, 551, 877, 935, 1152, 1227
KpnI GGTACC 1 cut(s) 581
KroI GCCGGC 1 cut(s) 607
KroNI GCCGGC 1 cut(s) 609
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 4 cut(s) 169, 388, 492, 1215
LmnI GCTCC 4 cut(s) 593, 1113, 1273, 1281
Lsp1109I GCAGC 1 cut(s) 757
LweI GCATC 3 cut(s) 490, 1061, 1083
MaeI CTAG 3 cut(s) 666, 1158, 1308
MaeII ACGT 2 cut(s) 729, 1204
MaeIII GTNAC 5 cut(s) 360, 639, 685, 1153, 1228
MalI GATC 4 cut(s) 171, 390, 494, 1217
MboI GATC 4 cut(s) 169, 388, 492, 1215
MboII GAAGA 6 cut(s) 63, 115, 1016, 1186, 1253, 1256
MhlI GDGCHC 2 cut(s) 766, 1278
MlsI TGGCCA 2 cut(s) 892, 1253
MluCI AATT 4 cut(s) 57, 880, 992, 1122
MluNI TGGCCA 2 cut(s) 892, 1253
MlyI GAGTC 3 cut(s) 451, 611, 1037
Mox20I TGGCCA 2 cut(s) 892, 1253
Mph1103I ATGCAT 1 cut(s) 1076
MroNI GCCGGC 1 cut(s) 607
MscI TGGCCA 2 cut(s) 892, 1253
MseI TTAA 4 cut(s) 342, 450, 588, 1295
MslI CAYNNNNRTG 2 cut(s) 552, 1184
Msp20I TGGCCA 2 cut(s) 892, 1253
MspI CCGG 2 cut(s) 608, 791
MspR9I CCNGG 1 cut(s) 245
MvaI CCWGG 1 cut(s) 245
MwoI GCNNNNNNNGC 3 cut(s) 407, 770, 1141
NaeI GCCGGC 1 cut(s) 609
NcoI CCATGG 1 cut(s) 873
NdeII GATC 4 cut(s) 169, 388, 492, 1215
NgoMIV GCCGGC 1 cut(s) 607
NlaIII CATG 8 cut(s) 21, 513, 534, 551, 877, 935, 1152, 1227
NlaIV GGNNCC 2 cut(s) 579, 595
NmuCI GTSAC 2 cut(s) 685, 1228
NsiI ATGCAT 1 cut(s) 1076
NspI RCATGY 1 cut(s) 21
PagI TCATGA 1 cut(s) 547
PcsI WCGNNNNNNNCGW 1 cut(s) 471
PdiI GCCGGC 1 cut(s) 609
PfeI GAWTC 1 cut(s) 462
PkrI GCNGC 1 cut(s) 772
PleI GAGTC 3 cut(s) 450, 611, 1036
PpsI GAGTC 3 cut(s) 450, 611, 1036
PshAI GACNNNNGTC 1 cut(s) 67
PsiI TTATAA 1 cut(s) 780
Psp124BI GAGCTC 1 cut(s) 1278
Psp6I CCWGG 1 cut(s) 243
PspEI GGTNACC 1 cut(s) 639
PspGI CCWGG 1 cut(s) 243
PspN4I GGNNCC 2 cut(s) 579, 595
PspPI GGNCC 3 cut(s) 115, 263, 310
PsrI GAACNNNNNNTAC 2 cut(s) 345, 377
RsaI GTAC 6 cut(s) 525, 579, 724, 732, 808, 861
RsaNI GTAC 6 cut(s) 524, 578, 723, 731, 807, 860
RseI CAYNNNNRTG 2 cut(s) 552, 1184
SacI GAGCTC 1 cut(s) 1278
SaqAI TTAA 4 cut(s) 342, 450, 588, 1295
SatI GCNGC 1 cut(s) 771
Sau3AI GATC 4 cut(s) 169, 388, 492, 1215
Sau96I GGNCC 3 cut(s) 115, 263, 310
SchI GAGTC 3 cut(s) 451, 611, 1037
ScrFI CCNGG 1 cut(s) 245
SduI GDGCHC 2 cut(s) 766, 1278
SfaNI GCATC 3 cut(s) 490, 1061, 1083
SinI GGWCC 1 cut(s) 115
SmiMI CAYNNNNRTG 2 cut(s) 552, 1184
SmlI CTYRAG 3 cut(s) 46, 305, 704
SmoI CTYRAG 3 cut(s) 46, 305, 704
Sse9I AATT 4 cut(s) 57, 880, 992, 1122
SsiI CCGC 4 cut(s) 408, 456, 986, 1135
SspMI CTAG 3 cut(s) 666, 1158, 1308
SstI GAGCTC 1 cut(s) 1278
StyD4I CCNGG 1 cut(s) 243
StyI CCWWGG 3 cut(s) 219, 873, 1065
TaaI ACNGT 2 cut(s) 585, 603
TaiI ACGT 2 cut(s) 732, 1207
TaqI TCGA 2 cut(s) 1218, 1236
TasI AATT 4 cut(s) 57, 880, 992, 1122
TatI WGTACW 1 cut(s) 806
TfiI GAWTC 1 cut(s) 462
Tru1I TTAA 4 cut(s) 342, 450, 588, 1295
Tru9I TTAA 4 cut(s) 342, 450, 588, 1295
TscAI CASTG 5 cut(s) 172, 606, 819, 1084, 1309
TseFI GTSAC 2 cut(s) 685, 1228
TseI GCWGC 1 cut(s) 770
Tsp45I GTSAC 2 cut(s) 685, 1228
TspDTI ATGAA 5 cut(s) 303, 570, 1134, 1254, 1272
TspGWI ACGGA 3 cut(s) 606, 827, 938
TspRI CASTG 5 cut(s) 172, 606, 819, 1084, 1309
VpaK11BI GGWCC 1 cut(s) 115
XapI RAATTY 1 cut(s) 992
XceI RCATGY 1 cut(s) 21
XspI CTAG 3 cut(s) 666, 1158, 1308
Zsp2I ATGCAT 1 cut(s) 1076
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.