RLG00000022964

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000722
Physical Location & Seq
Forward (+)
15930356 .. 15932046
1691 bp
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UTR
Exon/CDS
Intron
RLM00000022964

Sequence Viewer

Length: 453 bp
ATGCCCAAATTTATTGTAGTGTCAAGGGCTAAAGCATGCACCCATCCACTGGTAAAAATCACCTCGAGGAAGATTATTAAACCCTCATCTCCAACTCCTCATCACCAAAGAAATCTCGAGCTCTCTTTTCTGGACCAACTGCTGCCTCCTACCTTATACCCATCTATCATATTTTTCTACTCTTCCCCTACTAGTGATCCCGCTTCCACTGTTTCAGAGAGCTTGCAAGCATCTCTATCCAAAGTTTTGGTTCTCTTCTATCCACTCGCTGGTCGACTGAAAACCACTGCCTCCGTCTACTGCAACGACGAAGGAGCCCATTTTCTTGAGGCCCGAGTTAACTGCCAGCTCTCGGATTTACTTAAAGTTCCTGAGCACAAGTTGCTTAACAACCTTATCCCTGATGAGATTGGGGATGATTTCGTTGTTTTTCGAAGACTAATGATGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

151

Amino Acids

16.85

Weight (kDa)

8.47

Isoelectric Point (pI)

45.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 18 - 136 3.8e-32 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 64
AccB7I CCANNNNNTGG 2 cut(s) 49, 269
AccI GTMKAC 2 cut(s) 274, 297
AciI CCGC 1 cut(s) 201
AclWI GGATC 1 cut(s) 191
AcsI RAATTY 1 cut(s) 8
AfiI CCNNNNNNNGG 3 cut(s) 49, 269, 352
AhlI ACTAGT 1 cut(s) 191
AluBI AGCT 3 cut(s) 121, 222, 349
AluI AGCT 3 cut(s) 121, 222, 349
Alw21I GWGCWC 2 cut(s) 123, 378
AlwI GGATC 1 cut(s) 191
Ama87I CYCGRG 3 cut(s) 64, 116, 333
AoxI GGCC 1 cut(s) 330
ApeKI GCWGC 1 cut(s) 142
ApoI RAATTY 1 cut(s) 8
AspS9I GGNCC 2 cut(s) 133, 331
AsuHPI GGTGA 2 cut(s) 52, 95
AsuII TTCGAA 1 cut(s) 433
AvaI CYCGRG 3 cut(s) 64, 116, 333
AvaII GGWCC 1 cut(s) 133
BanII GRGCYC 2 cut(s) 123, 319
BbsI GAAGAC 1 cut(s) 442
Bbv12I GWGCWC 2 cut(s) 123, 378
BbvI GCAGC 1 cut(s) 129
BccI CCATC 3 cut(s) 51, 169, 439
BcgI CGANNNNNNTGC 2 cut(s) 324, 358
BcuI ACTAGT 1 cut(s) 191
BfaI CTAG 1 cut(s) 192
BisI GCNGC 1 cut(s) 143
BlsI GCNGC 1 cut(s) 144
Bme18I GGWCC 1 cut(s) 133
BmeT110I CYCGRG 3 cut(s) 64, 116, 333
BmgT120I GGNCC 2 cut(s) 133, 331
BmiI GGNNCC 1 cut(s) 316
BmsI GCATC 1 cut(s) 239
BpiI GAAGAC 1 cut(s) 442
Bpu10I CCTNAGC 1 cut(s) 372
Bpu14I TTCGAA 1 cut(s) 433
BpuEI CTTGAG 1 cut(s) 347
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 269, 352
Bse1I ACTGG 1 cut(s) 54
BseGI GGATG 2 cut(s) 43, 421
BseLI CCNNNNNNNGG 3 cut(s) 49, 269, 352
BseMII CTCAG 1 cut(s) 363
BseNI ACTGG 1 cut(s) 54
BseRI GAGGAG 1 cut(s) 87
BseXI GCAGC 1 cut(s) 129
BshFI GGCC 1 cut(s) 332
BsiHKAI GWGCWC 2 cut(s) 123, 378
BsiHKCI CYCGRG 3 cut(s) 64, 116, 333
BslI CCNNNNNNNGG 3 cut(s) 49, 269, 352
BsnI GGCC 1 cut(s) 332
BsoBI CYCGRG 3 cut(s) 64, 116, 333
Bsp119I TTCGAA 1 cut(s) 433
Bsp1286I GDGCHC 3 cut(s) 123, 319, 378
Bsp143I GATC 1 cut(s) 196
BspACI CCGC 1 cut(s) 201
BspANI GGCC 1 cut(s) 332
BspCNI CTCAG 1 cut(s) 364
BspLI GGNNCC 1 cut(s) 316
BspPI GGATC 1 cut(s) 191
BspT104I TTCGAA 1 cut(s) 433
BsrI ACTGG 1 cut(s) 54
BssMI GATC 1 cut(s) 196
Bst4CI ACNGT 1 cut(s) 211
Bst6I CTCTTC 2 cut(s) 187, 260
BstAPI GCANNNNNTGC 1 cut(s) 382
BstBI TTCGAA 1 cut(s) 433
BstC8I GCNNGC 4 cut(s) 37, 224, 228, 347
BstDEI CTNAG 1 cut(s) 372
BstF5I GGATG 2 cut(s) 43, 421
BstKTI GATC 1 cut(s) 199
BstMBI GATC 1 cut(s) 196
BstMWI GCNNNNNNNGC 1 cut(s) 382
BstNSI RCATGY 1 cut(s) 39
BstV1I GCAGC 1 cut(s) 129
BstV2I GAAGAC 1 cut(s) 442
BstXI CCANNNNNNTGG 1 cut(s) 247
BsuRI GGCC 1 cut(s) 332
BtsCI GGATG 2 cut(s) 43, 421
BtsI GCAGTG 1 cut(s) 285
BtsIMutI CAGTG 3 cut(s) 47, 207, 285
Cac8I GCNNGC 4 cut(s) 37, 224, 228, 347
Cfr13I GGNCC 2 cut(s) 133, 331
CviAII CATG 1 cut(s) 36
CviJI RGCY 6 cut(s) 29, 121, 222, 317, 332, 349
CviKI_1 RGCY 6 cut(s) 29, 121, 222, 317, 332, 349
DdeI CTNAG 1 cut(s) 372
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
Eam1104I CTCTTC 2 cut(s) 187, 260
EarI CTCTTC 2 cut(s) 187, 260
Ecl136II GAGCTC 1 cut(s) 121
Eco24I GRGCYC 2 cut(s) 123, 319
Eco47I GGWCC 1 cut(s) 133
Eco53kI GAGCTC 1 cut(s) 121
Eco88I CYCGRG 3 cut(s) 64, 116, 333
EcoICRI GAGCTC 1 cut(s) 121
EcoT38I GRGCYC 2 cut(s) 123, 319
FaeI CATG 1 cut(s) 39
FaiI YATR 3 cut(s) 37, 157, 170
FatI CATG 1 cut(s) 35
FauI CCCGC 1 cut(s) 208
FblI GTMKAC 2 cut(s) 274, 297
Fnu4HI GCNGC 1 cut(s) 143
FokI GGATG 2 cut(s) 30, 428
FriOI GRGCYC 2 cut(s) 123, 319
Fsp4HI GCNGC 1 cut(s) 143
FspBI CTAG 1 cut(s) 192
GluI GCNGC 1 cut(s) 143
HaeIII GGCC 1 cut(s) 332
Hin1II CATG 1 cut(s) 39
HincII GTYRAC 2 cut(s) 275, 340
HindII GTYRAC 2 cut(s) 275, 340
HpaI GTTAAC 1 cut(s) 340
HphI GGTGA 2 cut(s) 52, 95
Hpy166II GTNNAC 3 cut(s) 275, 298, 340
Hpy188I TCNGA 2 cut(s) 217, 355
Hpy188III TCNNGA 4 cut(s) 116, 131, 326, 371
Hpy8I GTNNAC 3 cut(s) 275, 298, 340
Hpy99I CGWCG 1 cut(s) 311
HpyAV CCTTC 1 cut(s) 305
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4V TGCA 3 cut(s) 39, 226, 303
HpyF10VI GCNNNNNNNGC 1 cut(s) 382
HpyF3I CTNAG 1 cut(s) 372
Hsp92II CATG 1 cut(s) 39
KspAI GTTAAC 1 cut(s) 340
Kzo9I GATC 1 cut(s) 196
LmnI GCTCC 1 cut(s) 314
LpnPI CCDG 6 cut(s) 35, 116, 255, 359, 384, 414
Lsp1109I GCAGC 1 cut(s) 129
LweI GCATC 1 cut(s) 239
MaeI CTAG 1 cut(s) 192
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MboII GAAGA 4 cut(s) 82, 174, 247, 447
MhlI GDGCHC 3 cut(s) 123, 319, 378
MluCI AATT 1 cut(s) 8
MmeI TCCRAC 1 cut(s) 116
MnlI CCTC 7 cut(s) 60, 73, 94, 108, 156, 301, 322
MseI TTAA 4 cut(s) 78, 339, 363, 387
MwoI GCNNNNNNNGC 1 cut(s) 382
NdeII GATC 1 cut(s) 196
NlaIII CATG 1 cut(s) 39
NlaIV GGNNCC 1 cut(s) 316
NspI RCATGY 1 cut(s) 39
NspV TTCGAA 1 cut(s) 433
PaeI GCATGC 1 cut(s) 39
PaeR7I CTCGAG 2 cut(s) 64, 116
PflMI CCANNNNNTGG 2 cut(s) 49, 269
PkrI GCNGC 1 cut(s) 144
Psp124BI GAGCTC 1 cut(s) 123
PspN4I GGNNCC 1 cut(s) 316
PspPI GGNCC 2 cut(s) 133, 331
PspXI VCTCGAGB 1 cut(s) 64
SacI GAGCTC 1 cut(s) 123
SalI GTCGAC 1 cut(s) 273
SaqAI TTAA 4 cut(s) 78, 339, 363, 387
SatI GCNGC 1 cut(s) 143
Sau3AI GATC 1 cut(s) 196
Sau96I GGNCC 2 cut(s) 133, 331
SduI GDGCHC 3 cut(s) 123, 319, 378
SetI ASST 6 cut(s) 65, 123, 155, 224, 351, 396
SfaNI GCATC 1 cut(s) 239
Sfr274I CTCGAG 2 cut(s) 64, 116
SfuI TTCGAA 1 cut(s) 433
SinI GGWCC 1 cut(s) 133
SlaI CTCGAG 2 cut(s) 64, 116
SmlI CTYRAG 3 cut(s) 64, 116, 326
SmoI CTYRAG 3 cut(s) 64, 116, 326
SpeI ACTAGT 1 cut(s) 191
SphI GCATGC 1 cut(s) 39
Sse9I AATT 1 cut(s) 8
SsiI CCGC 1 cut(s) 201
SspMI CTAG 1 cut(s) 192
SstI GAGCTC 1 cut(s) 123
TaaI ACNGT 1 cut(s) 211
TaqI TCGA 4 cut(s) 65, 117, 274, 433
TasI AATT 1 cut(s) 8
Tru1I TTAA 4 cut(s) 78, 339, 363, 387
Tru9I TTAA 4 cut(s) 78, 339, 363, 387
TscAI CASTG 3 cut(s) 54, 214, 292
TseI GCWGC 1 cut(s) 142
TspGWI ACGGA 1 cut(s) 283
TspRI CASTG 3 cut(s) 54, 214, 292
Van91I CCANNNNNTGG 2 cut(s) 49, 269
VpaK11BI GGWCC 1 cut(s) 133
XapI RAATTY 1 cut(s) 8
XceI RCATGY 1 cut(s) 39
XhoI CTCGAG 2 cut(s) 64, 116
XmiI GTMKAC 2 cut(s) 274, 297
XspI CTAG 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.