Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000722

Physical Location & Seq

Genomic Coordinates Forward (+)

15871391 .. 15874121

Gene Structure 2731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022960

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGCTGAAGCAAGCACCCATCCACTGGTAAAAATCACCTCGAGGAAGATGATTAAACCATCATTTCCAACTCCTCATCACCAAAAAAATCTCCTGCTCTCTTTTCTGGACCAACTGCTGCCTCCTACCTTATACCCATCTATTATATTTTTCTACTCTTCCCCTACCAGCGATCCTGCTTCCACTGTTTCAGAGAGCTTGCAAGCATCTCTCTCCAAAGCTTTGGTTCTCTTCTATCCACTCGCTGGCCGACTGAAAACCGCTGCTTCCGTTGACTGCAACGACGAAGGAGCTCATTTTCTTGAGGCCCGAGTTAACTGCCAGCTCTCGGATTTACTTAAATTGGCCTTGGGTTCAGTTGTTTTGGTTGTTCAAGTGATTCTTTTCAACTGTGGAGGAATCGTTGTTGCTGCTTCCCCAATACACAAGATCGGAGATGCCGGCGCATATTACAAATTTATACAAACATGGGCAGCCATACATCGTGGTGAATCCGATCAACTAGTGCTACCAGAGTTTAATGGAGCATCTGTGCTGCCTCCAAGAGAATTGTCACTCCCAAACAACTTGGGATTAATCCCAAATCAAAAGTTGACAACAAGGAGGTTCGTGTTTGATGTCACAAAGATTGCAAGTCTCAAGGCCAAAATCGGTGGCACACATGTAGAACTTGTTTCGGCAATTATCCTCAGAAGTGCTCTTGCTGCTTCTCATAAATCGAAGCCGGAGACTACTTCAAGCACAAATGTGTTGTCCCAAATTGTAAGTTTCAGCAACAGAATAGTCCCCGCTGTACCACTAAATGTCATGGGTAATTGGTTTTGGTCGGTTCAAGTGGTATTCAAACAAAACGAGACAGAACTACAGGAGTTGGTTACTACAATGAGGAAAGGAGTAACAGACTTCTACAAGGAGAAGGCGGACAGATTCAAAGGCGAAGATGGATTCCGGGTGGTGTTCGACTCCCATAGAGAGAGGGGCGAGTTCTTTAAGAGCACAAAGGGGTGCATCAATCTTTATATGGAACATGGAGATGGCATAGAAGTGTGGGTGACACTGGATGAAGAAGAAATGGCTATATTTGAGAGTGAAGAGGAGCTCCTTTCATTTGCTTGTGCAAACCCTAGTGCAACTGTTAATCATCAATCTCAATCTCGTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

388

Amino Acids

42.74

Weight (kDa)

6.61

Isoelectric Point (pI)

37.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	10 - 297	5.2e-45	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000722)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27601 FvH4_4g17130
malus_domestica	MD07G1048300.v1.1 MD07G1095200.v1.1 MD07G1095500.v1.1 MD07G1095700.v1.1 MD07G1096300.v1.1 MD07G1096400.v1.1 MD09G1062300.v1.1 MD14G1082000.v1.1
prunus_persica	Prupe.7G029300_v2.0.a1 Prupe.7G030000_v2.0.a1
pyrus_communis	pycom07g07870 pycom07g07910 pycom07g07950 pycom111g05260 pycom14g07130 pycom17g05610
rosa_chinensis	RchiOBHm_Chr1g0325581 RchiOBHm_Chr3g0487911 RchiOBHm_Chr3g0487931 RchiOBHm_Chr3g0487961 RchiOBHm_Chr3g0487971 RchiOBHm_Chr7g0216431 RchiOBHm_Chr7g0216441
rosa_laevigata	RLG00000002570 RLG00000003149 RLG00000022955 RLG00000022960 RLG00000022961 RLG00000022964 RLG00000022965 RLG00000022966 RLG00000030119 RLG00000030129
rosa_multiflora	Rmu_sc0004155.1_g000011 Rmu_sc0004448.1_g000015 Rmu_sc0004448.1_g000025 Rmu_sc0004448.1_g000031 Rmu_sc0006722.1_g000006
rosa_roxburghii	Rroxscaffold_3G00243230 Rroxscaffold_3G00243240 Rroxscaffold_3G00250720 Rroxscaffold_3G00252280 Rroxscaffold_4G00324640 Rroxscaffold_6G00394390 Rroxscaffold_6G00394400 Rroxscaffold_6G00394430 Rroxscaffold_6G00394440
rosa_rugosa	Rorug01G0053000 Rorug03G0237300 Rorug03G0237400 Rorug07G0160300 Rorug07G0160300 Rorug07G0160300
rosa_samantha	Rh1BG056200 Rh1DG073800 Rh3AG285000 Rh3AG285200 Rh3AG285400 Rh3CG320500 Rh3CG320800 Rh3DG318900 Rh3DG319000 Rh7AG299400 Rh7AG299500 Rh7BG290900 Rh7DG300800
rosa_wichuraiana	Rw0G004660 Rw0G004670 Rw1G005690 Rw3G025280 Rw7G025450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	40
AccB7I	CCANNNNNTGG	2 cut(s)	25, 245
AciI	CCGC	3 cut(s)	261, 789, 920
AclWI	GGATC	1 cut(s)	167
AcoI	YGGCCR	1 cut(s)	247
AcsI	RAATTY	1 cut(s)	455
AcuI	CTGAAG	1 cut(s)	27
AfaI	GTAC	1 cut(s)	795
AfiI	CCNNNNNNNGG	3 cut(s)	25, 245, 328
AflIII	ACRYGT	1 cut(s)	661
AgsI	TTSAA	6 cut(s)	374, 388, 738, 833, 844, 931
AhlI	ACTAGT	1 cut(s)	502
AleI	CACNNNNGTG	1 cut(s)	746
AluBI	AGCT	5 cut(s)	198, 221, 293, 325, 1099
AluI	AGCT	5 cut(s)	198, 221, 293, 325, 1099
Alw21I	GWGCWC	4 cut(s)	295, 700, 998, 1101
Alw26I	GTCTC	3 cut(s)	641, 722, 848
AlwI	GGATC	1 cut(s)	167
Ama87I	CYCGRG	2 cut(s)	40, 309
AoxI	GGCC	4 cut(s)	247, 306, 345, 642
ApeKI	GCWGC	6 cut(s)	118, 263, 410, 473, 535, 704
ApoI	RAATTY	1 cut(s)	455
ArsI	GACNNNNNNTTYG	2 cut(s)	737, 769
AseI	ATTAAT	1 cut(s)	575
AspLEI	GCGC	1 cut(s)	446
AspS9I	GGNCC	2 cut(s)	109, 307
AsuC2I	CCSGG	1 cut(s)	950
AsuHPI	GGTGA	4 cut(s)	28, 71, 500, 1063
AvaI	CYCGRG	2 cut(s)	40, 309
AvaII	GGWCC	1 cut(s)	109
BanII	GRGCYC	2 cut(s)	295, 1101
Bbv12I	GWGCWC	4 cut(s)	295, 700, 998, 1101
BbvI	GCAGC	6 cut(s)	105, 250, 397, 485, 522, 691
BccI	CCATC	5 cut(s)	27, 67, 145, 935, 1028
BcgI	CGANNNNNNTGC	2 cut(s)	300, 334
BcnI	CCSGG	1 cut(s)	950
BcoDI	GTCTC	3 cut(s)	641, 722, 848
BcuI	ACTAGT	1 cut(s)	502
BfaI	CTAG	2 cut(s)	503, 1125
BfmI	CTRYAG	1 cut(s)	863
BisI	GCNGC	6 cut(s)	119, 264, 411, 474, 536, 705
BlsI	GCNGC	6 cut(s)	120, 265, 412, 475, 537, 706
Bme1390I	CCNGG	1 cut(s)	950
Bme18I	GGWCC	1 cut(s)	109
BmeT110I	CYCGRG	2 cut(s)	40, 309
BmgT120I	GGNCC	2 cut(s)	109, 307
BmrFI	CCNGG	1 cut(s)	950
BmsI	GCATC	4 cut(s)	215, 427, 536, 1017
BpuEI	CTTGAG	2 cut(s)	323, 623
BpuMI	CCSGG	1 cut(s)	950
BsaJI	CCNNGG	1 cut(s)	348
BsaXI	ACNNNNNCTCC	4 cut(s)	387, 417, 516, 546
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 245, 328
Bse118I	RCCGGY	1 cut(s)	440
Bse1I	ACTGG	2 cut(s)	30, 1062
BseDI	CCNNGG	1 cut(s)	348
BseGI	GGATG	2 cut(s)	19, 1066
BseLI	CCNNNNNNNGG	3 cut(s)	25, 245, 328
BseMII	CTCAG	1 cut(s)	703
BseNI	ACTGG	2 cut(s)	30, 1062
BseRI	GAGGAG	2 cut(s)	63, 1109
BseXI	GCAGC	6 cut(s)	105, 250, 397, 485, 522, 691
BshFI	GGCC	4 cut(s)	249, 308, 347, 644
BsiHKAI	GWGCWC	4 cut(s)	295, 700, 998, 1101
BsiHKCI	CYCGRG	2 cut(s)	40, 309
BsiSI	CCGG	3 cut(s)	441, 725, 949
BslFI	GGGAC	2 cut(s)	739, 770
BslI	CCNNNNNNNGG	3 cut(s)	25, 245, 328
BsmAI	GTCTC	3 cut(s)	641, 722, 848
BsmFI	GGGAC	2 cut(s)	739, 770
BsnI	GGCC	4 cut(s)	249, 308, 347, 644
BsoBI	CYCGRG	2 cut(s)	40, 309
Bsp1286I	GDGCHC	4 cut(s)	295, 700, 998, 1101
Bsp143I	GATC	3 cut(s)	172, 429, 496
BspACI	CCGC	3 cut(s)	261, 789, 920
BspANI	GGCC	4 cut(s)	249, 308, 347, 644
BspCNI	CTCAG	1 cut(s)	702
BspPI	GGATC	1 cut(s)	167
BsrFI	RCCGGY	1 cut(s)	440
BsrI	ACTGG	2 cut(s)	30, 1062
BssAI	RCCGGY	1 cut(s)	440
BssECI	CCNNGG	1 cut(s)	348
BssMI	GATC	3 cut(s)	172, 429, 496
BssT1I	CCWWGG	1 cut(s)	348
Bst4CI	ACNGT	3 cut(s)	187, 392, 1135
Bst6I	CTCTTC	3 cut(s)	163, 236, 1086
BstC8I	GCNNGC	6 cut(s)	13, 200, 204, 247, 323, 442
BstDEI	CTNAG	1 cut(s)	689
BstF5I	GGATG	2 cut(s)	19, 1066
BstHHI	GCGC	1 cut(s)	446
BstKTI	GATC	3 cut(s)	175, 432, 499
BstMAI	GTCTC	3 cut(s)	641, 722, 848
BstMBI	GATC	3 cut(s)	172, 429, 496
BstMWI	GCNNNNNNNGC	1 cut(s)	704
BstNSI	RCATGY	1 cut(s)	665
BstSCI	CCNGG	1 cut(s)	948
BstSFI	CTRYAG	1 cut(s)	863
BstV1I	GCAGC	6 cut(s)	105, 250, 397, 485, 522, 691
BstXI	CCANNNNNNTGG	1 cut(s)	223
BsuRI	GGCC	4 cut(s)	249, 308, 347, 644
BtsCI	GGATG	2 cut(s)	19, 1066
BtsIMutI	CAGTG	3 cut(s)	23, 183, 1055
Cac8I	GCNNGC	6 cut(s)	13, 200, 204, 247, 323, 442
CfoI	GCGC	1 cut(s)	446
Cfr10I	RCCGGY	1 cut(s)	440
Cfr13I	GGNCC	2 cut(s)	109, 307
Csp6I	GTAC	1 cut(s)	794
CspCI	CAANNNNNGTGG	2 cut(s)	634, 669
CviAII	CATG	4 cut(s)	468, 662, 808, 1028
CviQI	GTAC	1 cut(s)	794
DdeI	CTNAG	1 cut(s)	689
DpnI	GATC	3 cut(s)	174, 431, 498
DpnII	GATC	3 cut(s)	172, 429, 496
EaeI	YGGCCR	1 cut(s)	247
Eam1104I	CTCTTC	3 cut(s)	163, 236, 1086
EarI	CTCTTC	3 cut(s)	163, 236, 1086
EciI	GGCGGA	1 cut(s)	935
Ecl136II	GAGCTC	2 cut(s)	293, 1099
Eco130I	CCWWGG	1 cut(s)	348
Eco24I	GRGCYC	2 cut(s)	295, 1101
Eco47I	GGWCC	1 cut(s)	109
Eco53kI	GAGCTC	2 cut(s)	293, 1099
Eco57I	CTGAAG	1 cut(s)	27
Eco88I	CYCGRG	2 cut(s)	40, 309
EcoICRI	GAGCTC	2 cut(s)	293, 1099
EcoT14I	CCWWGG	1 cut(s)	348
EcoT38I	GRGCYC	2 cut(s)	295, 1101
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	4 cut(s)	471, 665, 811, 1031
FalI	AAGNNNNNCTT	2 cut(s)	366, 398
FaqI	GGGAC	2 cut(s)	739, 770
FatI	CATG	4 cut(s)	467, 661, 807, 1027
FauI	CCCGC	1 cut(s)	796
Fnu4HI	GCNGC	6 cut(s)	119, 264, 411, 474, 536, 705
FokI	GGATG	2 cut(s)	6, 1073
FriOI	GRGCYC	2 cut(s)	295, 1101
Fsp4HI	GCNGC	6 cut(s)	119, 264, 411, 474, 536, 705
FspBI	CTAG	2 cut(s)	503, 1125
GlaI	GCGC	1 cut(s)	445
GluI	GCNGC	6 cut(s)	119, 264, 411, 474, 536, 705
HaeIII	GGCC	4 cut(s)	249, 308, 347, 644
HapII	CCGG	3 cut(s)	441, 725, 949
HhaI	GCGC	1 cut(s)	446
Hin1II	CATG	4 cut(s)	471, 665, 811, 1031
Hin6I	GCGC	1 cut(s)	444
HinP1I	GCGC	1 cut(s)	444
HincII	GTYRAC	3 cut(s)	274, 316, 594
HindII	GTYRAC	3 cut(s)	274, 316, 594
HindIII	AAGCTT	1 cut(s)	219
HinfI	GANTC	6 cut(s)	379, 399, 491, 927, 945, 962
HpaI	GTTAAC	1 cut(s)	316
HpaII	CCGG	3 cut(s)	441, 725, 949
HphI	GGTGA	4 cut(s)	28, 71, 500, 1063
Hpy166II	GTNNAC	3 cut(s)	274, 316, 594
Hpy188I	TCNGA	5 cut(s)	193, 331, 434, 496, 692
Hpy188III	TCNNGA	2 cut(s)	107, 302
Hpy8I	GTNNAC	3 cut(s)	274, 316, 594
Hpy99I	CGWCG	1 cut(s)	287
HpyAV	CCTTC	2 cut(s)	281, 910
HpyCH4III	ACNGT	3 cut(s)	187, 392, 1135
HpyCH4V	TGCA	6 cut(s)	202, 279, 632, 1008, 1118, 1130
HpyF10VI	GCNNNNNNNGC	1 cut(s)	704
HpyF3I	CTNAG	1 cut(s)	689
Hsp92II	CATG	4 cut(s)	471, 665, 811, 1031
HspAI	GCGC	1 cut(s)	444
KroI	GCCGGC	1 cut(s)	440
KroNI	GCCGGC	1 cut(s)	442
KspAI	GTTAAC	1 cut(s)	316
Kzo9I	GATC	3 cut(s)	172, 429, 496
LmnI	GCTCC	4 cut(s)	290, 524, 1096, 1104
Lsp1109I	GCAGC	6 cut(s)	105, 250, 397, 485, 522, 691
LweI	GCATC	4 cut(s)	215, 427, 536, 1017
MaeI	CTAG	2 cut(s)	503, 1125
MaeIII	GTNAC	5 cut(s)	552, 619, 874, 895, 1051
MalI	GATC	3 cut(s)	174, 431, 498
MboI	GATC	3 cut(s)	172, 429, 496
MboII	GAAGA	7 cut(s)	58, 150, 223, 950, 1076, 1079, 1103
MhlI	GDGCHC	4 cut(s)	295, 700, 998, 1101
MluCI	AATT	6 cut(s)	341, 455, 548, 681, 759, 814
MlyI	GAGTC	1 cut(s)	956
MmeI	TCCRAC	1 cut(s)	92
MroNI	GCCGGC	1 cut(s)	440
MseI	TTAA	7 cut(s)	54, 315, 339, 519, 575, 990, 1137
MslI	CAYNNNNRTG	4 cut(s)	486, 746, 1032, 1043
MspA1I	CMGCKG	2 cut(s)	263, 791
MspI	CCGG	3 cut(s)	441, 725, 949
MspR9I	CCNGG	1 cut(s)	950
MwoI	GCNNNNNNNGC	1 cut(s)	704
NaeI	GCCGGC	1 cut(s)	442
NciI	CCSGG	1 cut(s)	950
NdeII	GATC	3 cut(s)	172, 429, 496
NgoMIV	GCCGGC	1 cut(s)	440
NlaIII	CATG	4 cut(s)	471, 665, 811, 1031
NmuCI	GTSAC	3 cut(s)	552, 619, 1051
NspI	RCATGY	1 cut(s)	665
OliI	CACNNNNGTG	1 cut(s)	746
PaeR7I	CTCGAG	1 cut(s)	40
PciI	ACATGT	1 cut(s)	661
PdiI	GCCGGC	1 cut(s)	442
PfeI	GAWTC	5 cut(s)	379, 399, 491, 927, 945
PflMI	CCANNNNNTGG	2 cut(s)	25, 245
PkrI	GCNGC	6 cut(s)	120, 265, 412, 475, 537, 706
PleI	GAGTC	1 cut(s)	956
PpsI	GAGTC	1 cut(s)	956
PscI	ACATGT	1 cut(s)	661
PshBI	ATTAAT	1 cut(s)	575
Psp124BI	GAGCTC	2 cut(s)	295, 1101
PspPI	GGNCC	2 cut(s)	109, 307
PspXI	VCTCGAGB	1 cut(s)	40
RsaI	GTAC	1 cut(s)	795
RsaNI	GTAC	1 cut(s)	794
RseI	CAYNNNNRTG	4 cut(s)	486, 746, 1032, 1043
SacI	GAGCTC	2 cut(s)	295, 1101
SaqAI	TTAA	7 cut(s)	54, 315, 339, 519, 575, 990, 1137
SatI	GCNGC	6 cut(s)	119, 264, 411, 474, 536, 705
Sau3AI	GATC	3 cut(s)	172, 429, 496
Sau96I	GGNCC	2 cut(s)	109, 307
SchI	GAGTC	1 cut(s)	956
ScrFI	CCNGG	1 cut(s)	950
SduI	GDGCHC	4 cut(s)	295, 700, 998, 1101
SetI	ASST	8 cut(s)	41, 131, 200, 223, 295, 327, 608, 1101
SfaNI	GCATC	4 cut(s)	215, 427, 536, 1017
SfcI	CTRYAG	1 cut(s)	863
Sfr274I	CTCGAG	1 cut(s)	40
SinI	GGWCC	1 cut(s)	109
SlaI	CTCGAG	1 cut(s)	40
SmiMI	CAYNNNNRTG	4 cut(s)	486, 746, 1032, 1043
SmlI	CTYRAG	3 cut(s)	40, 302, 638
SmoI	CTYRAG	3 cut(s)	40, 302, 638
SpeI	ACTAGT	1 cut(s)	502
Sse9I	AATT	6 cut(s)	341, 455, 548, 681, 759, 814
SsiI	CCGC	3 cut(s)	261, 789, 920
SspMI	CTAG	2 cut(s)	503, 1125
SstI	GAGCTC	2 cut(s)	295, 1101
StyD4I	CCNGG	1 cut(s)	948
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	3 cut(s)	187, 392, 1135
TaqI	TCGA	3 cut(s)	41, 719, 960
TasI	AATT	6 cut(s)	341, 455, 548, 681, 759, 814
TfiI	GAWTC	5 cut(s)	379, 399, 491, 927, 945
Tru1I	TTAA	7 cut(s)	54, 315, 339, 519, 575, 990, 1137
Tru9I	TTAA	7 cut(s)	54, 315, 339, 519, 575, 990, 1137
TscAI	CASTG	3 cut(s)	30, 190, 1062
TseFI	GTSAC	3 cut(s)	552, 619, 1051
TseI	GCWGC	6 cut(s)	118, 263, 410, 473, 535, 704
Tsp45I	GTSAC	3 cut(s)	552, 619, 1051
TspDTI	ATGAA	2 cut(s)	1077, 1095
TspGWI	ACGGA	1 cut(s)	259
TspRI	CASTG	3 cut(s)	30, 190, 1062
Van91I	CCANNNNNTGG	2 cut(s)	25, 245
VpaK11BI	GGWCC	1 cut(s)	109
VspI	ATTAAT	1 cut(s)	575
XapI	RAATTY	1 cut(s)	455
XceI	RCATGY	1 cut(s)	665
XhoI	CTCGAG	1 cut(s)	40
XspI	CTAG	2 cut(s)	503, 1125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.