Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0013558

Physical Location & Seq

Genomic Coordinates Forward (+)

1413178 .. 1422892

Gene Structure 9715 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3840 bp

ATGTCACTTCTGAGTAGATTCTTTTACAAAAGACCCCCAGATGGGTTGCTCGAATTCGTAGAGAGAGTATACGTATTTGATTCCTGTTTTTCCACTGAAGTCTTGCCTGATGAAATGTACCAAATATATCTACACGAAATCATTACTGAGTTACATGAAGAATTCCCCGACTCGTCCTTCCTTGCATTCAACTTTCGGGAGGGTGAGAAACGTAGCCAATTTGCTGAGATATTATGCGAATATGATGTTACAGTTATGGATTATCCTCGACAGTATGAGGGTTGTCCACTCCTCCCATTATCTCTTATTCAACATTTTCTTCGTGTTTGTGAGAGTTGGCTCTTGAATGACAAGCAACAAAATGTTATTCTTCTCCATTGTGAGAGGGGAGGTTGGCCACTCTTGGCTTTCCTTTTAGCTAGCTTTCTCATTTTCAGAAAACTGCATAGTGGGGAACGCAAGACGCTTGAAATTGTACATCGAGAAGCTCCTAAAGGTTTATTGCAGCTTTTGTCGCCTTTAAATCCTCTCCCATCTCAGCTGCGGTACCTTCAGTACGTGGCAAGGAGAAATATAGCTCCAGAGTGGCCACCTCCTGAGCGGGCACTTTCTTTAGACTGTGTTATACTTAGAGCCATTCCAAACTTTGATACCCAAAAAGGCTGCACTCCAGTTATCAGAATTTTTGGTCGGAATCTCCTTAGTAAGGGCGGGCTTTCAACCCAGATGATATTCTCCATGCCGAGGAAGAAGACACTTCGGAACTACCGTCAAGCAGACTGTGATGTCATCAAAATTGACATTCAGTGTTTAGTGCAAGGAGATGTTGTATTGGAGTGTGTCCACTTGGATTTGGATCCAGAGAGGGAAGTTATGATGTTCCGTATTATGTTCAACACTGCATTTATTCGTTCCAACATACTGATGCTGAATTCTGATAACTTGGACATTCTATGGGATGCAAAGGAGCGCTATCCAAAAGGCTTCCGAGCTGAGGTATTGTTTGGGGAGTTTGAGAGCATTTCTCCTCCTAGAGCTCCAACTACAACTTTGAATGGTGAGGAGAAAGGTGGATTGCCCCATGATACTTTTTCTAGGGTTCAAGAACTTTTCAATGGAGTTGAGTGGATTGATAGCAATGATGATGCGGCCTTGTGGTTTCTTAAACAGCTCTCTGTCCTAAGTGATGCGAAAGAATTGTCAAGGTTTCAAAACAAAATGAGTTTATATTCATCACCTGCTGACTCTGAAGAAGAAAATAATGCATCTAGCACTGCTGACAGTGCTGATGAAGCATTTGACACTGTTTCCAAGGCTTCAGCAGATTCAACAAAAGCATTGATGCTGGACAGTTTTGATTCTGTACCCTTATCATATGAGAATGATGGCCCACCTGATGCGAACTTTACTTCAGAGCCTCCTGATCAAGAGTCATTTGGACCTGTCCTGGATTCTCTTCATCAGCATTCATTAGATACAAGTAAAGGACCTCCACCTTGTTCATTCCCTGAATCATTGGCACCAAAATCCCTAACAACAGAACCATTACGTTCTGCTCTTCACACTCTACCATCACCTCCGCCGCCGCCGCCACCACCACCACCACTTCCTTTTATTGGTGTTAGTAGAGGGTCTTCACCATCCCCACCACTTCCACCCCTTAGCATATCCAGTAAAGATTCTGTGAACCGCTTACATTTGACTACTACTAGAGGTCCACCACTGCCGCCGCCGCCGCCACCACCACCACCACCCCTTGTTCCATCTCATTCTGTCTCTAGCAAAAGCCCACTGCCACCTCCTCCCCCACCTCCACCAACTTCTTCTACAGTGCCACCGCCAACCCCACCGACTCCTCCCTTTAAGTCTAGTCAGCAGTCTTTGCTGCCGCCACCACCACCACCACCACCACCTCCACCTCCTCCGTTTTTGGGAAGTACAACTAACAAGCTACCGCCACCACCGTCTCCCACTCCTCCTGTAAGTAACAATCTACAACCAATAGTGGCACCTCGGCCACCTCCTCCTCCATTGTCCACTTCTAGTTCTGTTTTTAGAGCACCTCCAGCTCCACCACCTCCTCCTATGAGTGGTAGCCTTAGTACTAATAATAGGGCACCACCCCCGCCTCCTCCTCCTCCACCATCCACTTCTAGTTCTGTTTTTGGAGCACCGCCAGCTCCACCACCTCCTCCTATGAGTGGTAGCCTTGGTACTAAGAGTAGGGCACCGCCCCCACCTCCTCCTCCTCCACCGTCCATTTCTAGTTCTGGGGTTGGAGCACCCCCACCTCCGCCTCCTCCTCCTATGAGTGGTAGCGTTGGTAATTATACTAGGCCACCGCCCCCACCTCCACCTCCTTCAGGACCTACAAGGCCAACCCCACCTCCTCCACCACCTGCACCAATGCCACCAAGTCTCGGTGCAACAGCATCTGTGCCTCCACCACCTGGAACAAAGGGCTCTAGTGCACCACCACCACCGCCACCATCAGTTGGAAGGGGCAAAGCATCTTCTGGGCTGGGGATTGTTGGAAAAGGCCGTGCGACTTCTATTGCCCCAAAGAAAACTTCCTTAAAGCCCTTACACTGGGTGAAAGTTAATCGAGCAATGAAAGAGAGTTTATGGGAGGATTTTCAGAAACAAGGCAATCAGCCAAGGGCTCCTGAAATAGATATATCAGAACTTGAAAGTCTGTTCTCAGCAGCCGCTGCTTCAGATGTGCATGGCAGTAAGACTGCTGGTCGACGTGGTTCTAACATTACCAAACCTGAGAAAGTGCAACTGATTGACTTGCGACGAGCGTATAACTGTGAAATTATGCTTTCAAAAGTAAAGATCCCCTTGCCAGATATGATTGTAAGTTCTTCCTCCTACTCATTTCTAGCTCTGGATTCTTCTGTTCTTGACATTGATCAGGTTGAGAATCTCATTAAATTTTGTCCTACCAAAGAAGAAATGGAAACTTTGAAGAACTATGCAGGCGACAAGGACATGCTAGGGAAGTGTGAACAGTTTTTTGTGGAGCTAATGAAGGTTCCACGAGTAGAGTCCAAGTTGCGAGTATTTGCTTTCAAAATTACCTTCTCTAGTCAGGTGAATGATTTAAGATCTAATCTGAATACAATCAATGGTGCTGCTAATGAGGTGAAGGAATCTGTGAAATTGCGACAGATAATGCAGACAATCCTTACTTTGGGAAATGCCTTGAATCAAGGCACTGCTCGAGGATCTGCTGTAGGATTCAAATTGGACAGCCTTCTTAAATTGTCTGATACCCGTGCAAGAAACAATAAAATGACTTTAATGCATTATTTGTGTAAGCTCCTTGCTGAGAAAATGCCAGAGTTGCTGGATTTTGATAAAGATCTGATTCATTTAGAAGCTGCTTCTAAGAGCTCATTTAATTTGATCATAACGTCAAATAACCAGATTCAATTGAAAGCTTTGGCTGAAGAAATGCAAGCTGTGAGTAAAGGTCTGGAAAAGGTTGAGCAAGAACTTGCTGCTTCAGAAAACGATGGAGCAATCTCTGCTGGTTTCCAAAAAGTGCTGAAGAATTTTCTTGATACTGCTGAAGCTGACGTAAGGTCGTTAATCTCCTTGTACTCTGAAGTGGGAAGAAATGCTGATTCTTTGTCTCAATACTTCGGGGAGGATCCAGCTCGGTGTCCTTTTGAACAAGTGACACAGGTCTTGTTCGTTTTTGTCAAGATGTTCAAAAAGTCACGAGAGGAAAATGAAAGACTTGCTGAGGCCGAAAAAAAGAAGCTTGAAAGGGAAGCCATTAAAGACCGGACAGTGACCAATTCATCTGCAAGGAAAGATGATGTTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0006996 GO:0007010 GO:0007015 GO:0007049 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009524 GO:0009555 GO:0009556 GO:0009574 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0030029 GO:0030036 GO:0032501 GO:0032502 GO:0034293 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043934 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044877 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0051015 GO:0051017 GO:0051321 GO:0051704 GO:0061572 GO:0071840 GO:0097435 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FH2 PTEN_C2

Protein Analysis

1280

Amino Acids

139.8

Weight (kDa)

6.56

Isoelectric Point (pI)

61.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTEN_C2	PF10409	198 - 337	4.5e-37	C2 domain of PTEN tumour-suppressor protein
FH2	PF02181	853 - 1241	8e-110	Formin Homology 2 Domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31810 AT1G31810
fragaria_vesca	FvH4_5g24110 FvH4_5g24110
malus_domestica	MD06G1017200.v1.1
prunus_persica	Prupe.5G019200_v2.0.a1
pyrus_communis	pycom06g01390
rosa_chinensis	RchiOBHm_Chr7g0213641
rosa_laevigata	RLG00000002794
rosa_multiflora	Rmu_sc0008101.1_g000010
rosa_roxburghii	Rroxscaffold_3G00245720
rosa_rugosa	Rorug07G0143800 Rorug07G0143900
rosa_samantha	Rh7AG276700 Rh7BG270900 Rh7CG295700 Rh7DG283000
rosa_wichuraiana	Rw7G023880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1246, 2407
AasI	GACNNNNNNGTC	1 cut(s)	785
Acc36I	ACCTGC	2 cut(s)	1246, 2407
Acc65I	GGTACC	1 cut(s)	546
AccB1I	GGYRCC	5 cut(s)	546, 1519, 2008, 2116, 2227
AccB7I	CCANNNNNTGG	2 cut(s)	2450, 2495
AccBSI	CCGCTC	1 cut(s)	601
AccI	GTMKAC	2 cut(s)	69, 2746
AclWI	GGATC	6 cut(s)	851, 864, 2833, 3238, 3653, 3666
AcoI	YGGCCR	3 cut(s)	395, 587, 2015
AcsI	RAATTY	6 cut(s)	53, 161, 681, 931, 2936, 3559
AdeI	CACNNNGTG	1 cut(s)	2593
AfaI	GTAC	9 cut(s)	119, 477, 548, 557, 1365, 1939, 2104, 2215, 3608
AfeI	AGCGCT	1 cut(s)	971
AhdI	GACNNNNNGTC	2 cut(s)	2742, 3589
AjiI	CACGTC	1 cut(s)	2750
AjnI	CCWGG	2 cut(s)	1446, 2449
AjuI	GAANNNNNNNTTGG	2 cut(s)	2554, 2586
Alw21I	GWGCWC	6 cut(s)	1039, 2062, 2173, 2284, 2473, 3401
Alw26I	GTCTC	4 cut(s)	1780, 1971, 2423, 3645
Alw44I	GTGCAC	1 cut(s)	2469
AlwI	GGATC	6 cut(s)	851, 864, 2833, 3238, 3653, 3666
AlwNI	CAGNNNCTG	2 cut(s)	2435, 2711
Ama87I	CYCGRG	1 cut(s)	3225
Aor51HI	AGCGCT	1 cut(s)	971
AoxI	GGCC	9 cut(s)	395, 587, 1149, 1387, 2015, 2336, 2375, 2539, 3756
ApaLI	GTGCAC	1 cut(s)	2469
ApeKI	GCWGC	9 cut(s)	505, 541, 663, 1885, 2705, 2711, 3137, 3386, 3506
ApoI	RAATTY	6 cut(s)	53, 161, 681, 931, 2936, 3559
ArsI	GACNNNNNNTTYG	2 cut(s)	1184, 1216
Asp718I	GGTACC	1 cut(s)	546
AspLEI	GCGC	1 cut(s)	972
AspS9I	GGNCC	5 cut(s)	1388, 1439, 1487, 1715, 2366
AsuHPI	GGTGA	8 cut(s)	215, 1070, 1227, 1566, 1629, 2605, 3109, 3160
AsuNHI	GCTAGC	1 cut(s)	419
AvaI	CYCGRG	1 cut(s)	3225
AvaII	GGWCC	4 cut(s)	1439, 1487, 1715, 2366
BaeGI	GKGCMC	4 cut(s)	607, 2119, 2230, 2473
BalI	TGGCCA	2 cut(s)	397, 589
BamHI	GGATCC	2 cut(s)	856, 3658
BanI	GGYRCC	5 cut(s)	546, 1519, 2008, 2116, 2227
BanII	GRGCYC	4 cut(s)	1039, 2465, 2665, 3401
BarI	GAAGNNNNNNTAC	2 cut(s)	1618, 1650
BauI	CACGAG	2 cut(s)	3042, 3729
BbsI	GAAGAC	2 cut(s)	758, 1626
Bbv12I	GWGCWC	6 cut(s)	1039, 2062, 2173, 2284, 2473, 3401
BbvCI	CCTCAGC	2 cut(s)	993, 3753
BbvI	GCAGC	9 cut(s)	517, 528, 650, 1872, 2698, 2717, 3124, 3373, 3493
BccI	CCATC	9 cut(s)	35, 541, 1379, 1579, 1648, 1771, 2152, 2497, 3515
BceAI	ACGGC	1 cut(s)	2526
BciT130I	CCWGG	2 cut(s)	1448, 2451
BclI	TGATCA	3 cut(s)	1423, 2914, 3411
BcoDI	GTCTC	4 cut(s)	1780, 1971, 2423, 3645
BfmI	CTRYAG	2 cut(s)	1827, 3237
BfoI	RGCGCY	1 cut(s)	973
BfuAI	ACCTGC	2 cut(s)	1246, 2407
BglII	AGATCT	2 cut(s)	3110, 3367
BmcAI	AGTACT	1 cut(s)	2104
Bme1390I	CCNGG	2 cut(s)	1448, 2451
Bme18I	GGWCC	4 cut(s)	1439, 1487, 1715, 2366
BmeRI	GACNNNNNGTC	2 cut(s)	2742, 3589
BmeT110I	CYCGRG	1 cut(s)	3225
BmgBI	CACGTC	1 cut(s)	2750
BmgT120I	GGNCC	5 cut(s)	1388, 1439, 1487, 1715, 2366
BmiI	GGNNCC	9 cut(s)	548, 858, 1521, 2010, 2118, 2229, 2664, 3039, 3660
BmrFI	CCNGG	2 cut(s)	1448, 2451
BmrI	ACTGGG	1 cut(s)	2599
BmsI	GCATC	9 cut(s)	915, 949, 1135, 1177, 1274, 1332, 1387, 2441, 2519
BmtI	GCTAGC	1 cut(s)	423
BmuI	ACTGGG	1 cut(s)	2599
BoxI	GACNNNNGTC	1 cut(s)	3692
BpiI	GAAGAC	2 cut(s)	758, 1626
BplI	GAGNNNNNCTC	2 cut(s)	1009, 1041
BpmI	CTGGAG	3 cut(s)	564, 654, 2049
Bpu10I	CCTNAGC	4 cut(s)	597, 993, 1661, 3753
BsaAI	YACGTR	2 cut(s)	73, 559
BsaBI	GATNNNNATC	2 cut(s)	855, 3366
BsaJI	CCNNGG	5 cut(s)	743, 1311, 2012, 2209, 2657
BsaWI	WCCGGW	1 cut(s)	3795
BsaXI	ACNNNNNCTCC	4 cut(s)	813, 843, 2371, 2401
Bse1I	ACTGG	3 cut(s)	671, 1671, 2594
Bse3DI	GCAATG	2 cut(s)	1144, 2616
Bse8I	GATNNNNATC	2 cut(s)	855, 3366
BseBI	CCWGG	2 cut(s)	1448, 2451
BseDI	CCNNGG	5 cut(s)	743, 1311, 2012, 2209, 2657
BseGI	GGATG	3 cut(s)	964, 1640, 2144
BseJI	GATNNNNATC	2 cut(s)	855, 3366
BseMI	GCAATG	2 cut(s)	1144, 2616
BseMII	CTCAG	9 cut(s)	138, 216, 551, 588, 984, 2715, 2763, 3324, 3744
BseNI	ACTGG	3 cut(s)	671, 1671, 2594
BseSI	GKGCMC	4 cut(s)	607, 2119, 2230, 2473
BseXI	GCAGC	9 cut(s)	517, 528, 650, 1872, 2698, 2717, 3124, 3373, 3493
BseYI	CCCAGC	1 cut(s)	2521
BsgI	GTGCAG	2 cut(s)	649, 2385
BshFI	GGCC	9 cut(s)	397, 589, 1151, 1389, 2017, 2338, 2377, 2541, 3758
BshNI	GGYRCC	5 cut(s)	546, 1519, 2008, 2116, 2227
BsiHKAI	GWGCWC	6 cut(s)	1039, 2062, 2173, 2284, 2473, 3401
BsiHKCI	CYCGRG	1 cut(s)	3225
BsiSI	CCGG	1 cut(s)	3796
BsmAI	GTCTC	4 cut(s)	1780, 1971, 2423, 3645
BsmBI	CGTCTC	1 cut(s)	1971
BsmI	GAATGC	2 cut(s)	185, 1465
BsnI	GGCC	9 cut(s)	397, 589, 1151, 1389, 2017, 2338, 2377, 2541, 3758
BsoBI	CYCGRG	1 cut(s)	3225
Bsp1407I	TGTACA	1 cut(s)	475
Bsp143I	GATC	9 cut(s)	856, 1423, 2838, 2914, 3110, 3230, 3367, 3411, 3658
BspANI	GGCC	9 cut(s)	397, 589, 1151, 1389, 2017, 2338, 2377, 2541, 3758
BspCNI	CTCAG	9 cut(s)	139, 217, 550, 589, 985, 2714, 2764, 3325, 3745
BspLI	GGNNCC	9 cut(s)	548, 858, 1521, 2010, 2118, 2229, 2664, 3039, 3660
BspMI	ACCTGC	2 cut(s)	1246, 2407
BspOI	GCTAGC	1 cut(s)	423
BspPI	GGATC	6 cut(s)	851, 864, 2833, 3238, 3653, 3666
BspQI	GCTCTTC	1 cut(s)	1563
BspT107I	GGYRCC	5 cut(s)	546, 1519, 2008, 2116, 2227
BsrBI	CCGCTC	1 cut(s)	601
BsrDI	GCAATG	2 cut(s)	1144, 2616
BsrGI	TGTACA	1 cut(s)	475
BsrI	ACTGG	3 cut(s)	671, 1671, 2594
BssECI	CCNNGG	5 cut(s)	743, 1311, 2012, 2209, 2657
BssMI	GATC	9 cut(s)	856, 1423, 2838, 2914, 3110, 3230, 3367, 3411, 3658
BssNAI	GTATAC	1 cut(s)	70
BssSI	CACGAG	2 cut(s)	3042, 3729
BssT1I	CCWWGG	3 cut(s)	1311, 2209, 2657
Bst1107I	GTATAC	1 cut(s)	70
Bst2BI	CACGAG	2 cut(s)	3042, 3729
Bst2UI	CCWGG	2 cut(s)	1448, 2451
Bst6I	CTCTTC	2 cut(s)	1461, 1563
BstAPI	GCANNNNNTGC	3 cut(s)	1882, 2711, 3533
BstAUI	TGTACA	1 cut(s)	475
BstBAI	YACGTR	2 cut(s)	73, 559
BstC8I	GCNNGC	6 cut(s)	421, 603, 713, 2178, 2983, 3465
BstENI	CCTNNNNNAGG	2 cut(s)	704, 2361
BstF5I	GGATG	3 cut(s)	964, 1640, 2144
BstH2I	RGCGCY	1 cut(s)	973
BstHHI	GCGC	1 cut(s)	972
BstKTI	GATC	9 cut(s)	859, 1426, 2841, 2917, 3113, 3233, 3370, 3414, 3661
BstMAI	GTCTC	4 cut(s)	1780, 1971, 2423, 3645
BstMBI	GATC	9 cut(s)	856, 1423, 2838, 2914, 3110, 3230, 3367, 3411, 3658
BstNI	CCWGG	2 cut(s)	1448, 2451
BstNSI	RCATGY	1 cut(s)	2998
BstPAI	GACNNNNGTC	1 cut(s)	3692
BstSCI	CCNGG	2 cut(s)	1446, 2449
BstSFI	CTRYAG	2 cut(s)	1827, 3237
BstSLI	GKGCMC	4 cut(s)	607, 2119, 2230, 2473
BstSNI	TACGTA	1 cut(s)	73
BstV1I	GCAGC	9 cut(s)	517, 528, 650, 1872, 2698, 2717, 3124, 3373, 3493
BstV2I	GAAGAC	2 cut(s)	758, 1626
BstX2I	RGATCY	6 cut(s)	856, 2838, 3110, 3230, 3367, 3658
BstYI	RGATCY	6 cut(s)	856, 2838, 3110, 3230, 3367, 3658
BstZ17I	GTATAC	1 cut(s)	70
BsuRI	GGCC	9 cut(s)	397, 589, 1151, 1389, 2017, 2338, 2377, 2541, 3758
BtrI	CACGTC	1 cut(s)	2750
BtsCI	GGATG	3 cut(s)	964, 1640, 2144
BtsI	GCAGTG	5 cut(s)	897, 1272, 1721, 1790, 3219
BveI	ACCTGC	2 cut(s)	1246, 2407
Cac8I	GCNNGC	6 cut(s)	421, 603, 713, 2178, 2983, 3465
CaiI	CAGNNNCTG	2 cut(s)	2435, 2711
CfoI	GCGC	1 cut(s)	972
Cfr13I	GGNCC	5 cut(s)	1388, 1439, 1487, 1715, 2366
CseI	GACGC	1 cut(s)	472
Csp6I	GTAC	9 cut(s)	118, 476, 547, 556, 1364, 1938, 2103, 2214, 3607
CviAII	CATG	5 cut(s)	155, 739, 1082, 2726, 2995
CviQI	GTAC	9 cut(s)	118, 476, 547, 556, 1364, 1938, 2103, 2214, 3607
DpnI	GATC	9 cut(s)	858, 1425, 2840, 2916, 3112, 3232, 3369, 3413, 3660
DpnII	GATC	9 cut(s)	856, 1423, 2838, 2914, 3110, 3230, 3367, 3411, 3658
DraI	TTTAAA	1 cut(s)	522
DraIII	CACNNNGTG	1 cut(s)	2593
DrdI	GACNNNNNNGTC	1 cut(s)	785
DriI	GACNNNNNGTC	2 cut(s)	2742, 3589
DseDI	GACNNNNNNGTC	1 cut(s)	785
EaeI	YGGCCR	3 cut(s)	395, 587, 2015
Eam1104I	CTCTTC	2 cut(s)	1461, 1563
Eam1105I	GACNNNNNGTC	2 cut(s)	2742, 3589
EarI	CTCTTC	2 cut(s)	1461, 1563
EciI	GGCGGA	2 cut(s)	1569, 2283
Ecl136II	GAGCTC	2 cut(s)	1037, 3399
Eco105I	TACGTA	1 cut(s)	73
Eco130I	CCWWGG	3 cut(s)	1311, 2209, 2657
Eco24I	GRGCYC	4 cut(s)	1039, 2465, 2665, 3401
Eco47I	GGWCC	4 cut(s)	1439, 1487, 1715, 2366
Eco47III	AGCGCT	1 cut(s)	971
Eco53kI	GAGCTC	2 cut(s)	1037, 3399
Eco88I	CYCGRG	1 cut(s)	3225
EcoICRI	GAGCTC	2 cut(s)	1037, 3399
EcoNI	CCTNNNNNAGG	2 cut(s)	704, 2361
EcoO109I	RGGNCCY	2 cut(s)	1487, 2366
EcoRI	GAATTC	3 cut(s)	53, 161, 931
EcoRII	CCWGG	2 cut(s)	1446, 2449
EcoT14I	CCWWGG	3 cut(s)	1311, 2209, 2657
EcoT22I	ATGCAT	2 cut(s)	1267, 3312
EcoT38I	GRGCYC	4 cut(s)	1039, 2465, 2665, 3401
ErhI	CCWWGG	3 cut(s)	1311, 2209, 2657
Esp3I	CGTCTC	1 cut(s)	1971
FaeI	CATG	5 cut(s)	158, 742, 1085, 2729, 2998
FalI	AAGNNNNNCTT	2 cut(s)	2828, 2860
FatI	CATG	5 cut(s)	154, 738, 1081, 2725, 2994
FauI	CCCGC	3 cut(s)	594, 704, 2133
FauNDI	CATATG	1 cut(s)	1375
FbaI	TGATCA	3 cut(s)	1423, 2914, 3411
FblI	GTMKAC	2 cut(s)	69, 2746
FokI	GGATG	3 cut(s)	971, 1627, 2131
FriOI	GRGCYC	4 cut(s)	1039, 2465, 2665, 3401
GlaI	GCGC	1 cut(s)	971
GsaI	CCCAGC	1 cut(s)	2525
GsuI	CTGGAG	3 cut(s)	564, 654, 2049
HaeII	RGCGCY	1 cut(s)	973
HaeIII	GGCC	9 cut(s)	397, 589, 1151, 1389, 2017, 2338, 2377, 2541, 3758
HapII	CCGG	1 cut(s)	3796
HgaI	GACGC	1 cut(s)	472
HhaI	GCGC	1 cut(s)	972
Hin1II	CATG	5 cut(s)	158, 742, 1085, 2729, 2998
Hin6I	GCGC	1 cut(s)	970
HinP1I	GCGC	1 cut(s)	970
HincII	GTYRAC	1 cut(s)	2747
HindII	GTYRAC	1 cut(s)	2747
HindIII	AAGCTT	2 cut(s)	3444, 3770
HpaII	CCGG	1 cut(s)	3796
HphI	GGTGA	8 cut(s)	215, 1070, 1227, 1566, 1629, 2605, 3109, 3160
Hpy166II	GTNNAC	9 cut(s)	70, 287, 844, 1687, 1718, 2037, 2471, 2747, 3011
Hpy8I	GTNNAC	9 cut(s)	70, 287, 844, 1687, 1718, 2037, 2471, 2747, 3011
Hpy99I	CGWCG	2 cut(s)	2751, 2802
HpyAV	CCTTC	8 cut(s)	187, 560, 2370, 2493, 3028, 3094, 3145, 3269
HpyCH4IV	ACGT	7 cut(s)	72, 211, 558, 1549, 2749, 3419, 3585
HpySE526I	ACGT	7 cut(s)	72, 211, 558, 1549, 2749, 3419, 3585
Hsp92II	CATG	5 cut(s)	158, 742, 1085, 2729, 2998
HspAI	GCGC	1 cut(s)	970
KpnI	GGTACC	1 cut(s)	550
Ksp22I	TGATCA	3 cut(s)	1423, 2914, 3411
Kzo9I	GATC	9 cut(s)	856, 1423, 2838, 2914, 3110, 3230, 3367, 3411, 3658
LguI	GCTCTTC	1 cut(s)	1563
Lsp1109I	GCAGC	9 cut(s)	517, 528, 650, 1872, 2698, 2717, 3124, 3373, 3493
LweI	GCATC	9 cut(s)	915, 949, 1135, 1177, 1274, 1332, 1387, 2441, 2519
MaeII	ACGT	7 cut(s)	72, 211, 558, 1549, 2749, 3419, 3585
MaeIII	GTNAC	7 cut(s)	3, 150, 247, 1985, 3685, 3726, 3802
MalI	GATC	9 cut(s)	858, 1425, 2840, 2916, 3112, 3232, 3369, 3413, 3660
MbiI	CCGCTC	1 cut(s)	601
MboI	GATC	9 cut(s)	856, 1423, 2838, 2914, 3110, 3230, 3367, 3411, 3658
MfeI	CAATTG	1 cut(s)	3437
MflI	RGATCY	6 cut(s)	856, 2838, 3110, 3230, 3367, 3658
MlsI	TGGCCA	2 cut(s)	397, 589
MluNI	TGGCCA	2 cut(s)	397, 589
MlyI	GAGTC	5 cut(s)	164, 1238, 1439, 1846, 3059
MmeI	TCCRAC	6 cut(s)	671, 939, 1064, 2257, 2476, 2512
Mox20I	TGGCCA	2 cut(s)	397, 589
Mph1103I	ATGCAT	2 cut(s)	1267, 3312
MscI	TGGCCA	2 cut(s)	397, 589
MslI	CAYNNNNRTG	1 cut(s)	923
Msp20I	TGGCCA	2 cut(s)	397, 589
MspA1I	CMGCKG	2 cut(s)	541, 2711
MspI	CCGG	1 cut(s)	3796
MspR9I	CCNGG	2 cut(s)	1448, 2451
MunI	CAATTG	1 cut(s)	3437
Mva1269I	GAATGC	2 cut(s)	185, 1465
MvaI	CCWGG	2 cut(s)	1448, 2451
NdeI	CATATG	1 cut(s)	1375
NdeII	GATC	9 cut(s)	856, 1423, 2838, 2914, 3110, 3230, 3367, 3411, 3658
NheI	GCTAGC	1 cut(s)	419
NlaIII	CATG	5 cut(s)	158, 742, 1085, 2729, 2998
NlaIV	GGNNCC	9 cut(s)	548, 858, 1521, 2010, 2118, 2229, 2664, 3039, 3660
NmeAIII	GCCGAG	2 cut(s)	768, 1993
NmuCI	GTSAC	4 cut(s)	3, 3685, 3726, 3802
NsiI	ATGCAT	2 cut(s)	1267, 3312
NspI	RCATGY	1 cut(s)	2998
PaeR7I	CTCGAG	1 cut(s)	3225
PaqCI	CACCTGC	2 cut(s)	1246, 2407
PciSI	GCTCTTC	1 cut(s)	1563
PcsI	WCGNNNNNNNCGW	1 cut(s)	766
PctI	GAATGC	2 cut(s)	185, 1465
PflMI	CCANNNNNTGG	2 cut(s)	2450, 2495
PfoI	TCCNGGA	1 cut(s)	1446
PleI	GAGTC	5 cut(s)	164, 1238, 1438, 1846, 3058
PpsI	GAGTC	5 cut(s)	164, 1238, 1438, 1846, 3058
Ppu21I	YACGTR	2 cut(s)	73, 559
PpuMI	RGGWCCY	2 cut(s)	1487, 2366
PshAI	GACNNNNGTC	1 cut(s)	3692
Psp124BI	GAGCTC	2 cut(s)	1039, 3401
Psp5II	RGGWCCY	2 cut(s)	1487, 2366
Psp6I	CCWGG	2 cut(s)	1446, 2449
PspFI	CCCAGC	1 cut(s)	2521
PspGI	CCWGG	2 cut(s)	1446, 2449
PspN4I	GGNNCC	9 cut(s)	548, 858, 1521, 2010, 2118, 2229, 2664, 3039, 3660
PspPI	GGNCC	5 cut(s)	1388, 1439, 1487, 1715, 2366
PspPPI	RGGWCCY	2 cut(s)	1487, 2366
PspXI	VCTCGAGB	1 cut(s)	3225
PstNI	CAGNNNCTG	2 cut(s)	2435, 2711
PsuI	RGATCY	6 cut(s)	856, 2838, 3110, 3230, 3367, 3658
PvuII	CAGCTG	1 cut(s)	541
RsaI	GTAC	9 cut(s)	119, 477, 548, 557, 1365, 1939, 2104, 2215, 3608
RsaNI	GTAC	9 cut(s)	118, 476, 547, 556, 1364, 1938, 2103, 2214, 3607
RseI	CAYNNNNRTG	1 cut(s)	923
SacI	GAGCTC	2 cut(s)	1039, 3401
SalI	GTCGAC	1 cut(s)	2745
SapI	GCTCTTC	1 cut(s)	1563
Sau3AI	GATC	9 cut(s)	856, 1423, 2838, 2914, 3110, 3230, 3367, 3411, 3658
Sau96I	GGNCC	5 cut(s)	1388, 1439, 1487, 1715, 2366
ScaI	AGTACT	1 cut(s)	2104
SchI	GAGTC	5 cut(s)	164, 1238, 1439, 1846, 3059
ScrFI	CCNGG	2 cut(s)	1448, 2451
SfaNI	GCATC	9 cut(s)	915, 949, 1135, 1177, 1274, 1332, 1387, 2441, 2519
SfcI	CTRYAG	2 cut(s)	1827, 3237
Sfr274I	CTCGAG	1 cut(s)	3225
SinI	GGWCC	4 cut(s)	1439, 1487, 1715, 2366
SlaI	CTCGAG	1 cut(s)	3225
SmiMI	CAYNNNNRTG	1 cut(s)	923
SmlI	CTYRAG	1 cut(s)	3225
SmoI	CTYRAG	1 cut(s)	3225
SnaBI	TACGTA	1 cut(s)	73
SstI	GAGCTC	2 cut(s)	1039, 3401
StyD4I	CCNGG	2 cut(s)	1446, 2449
StyI	CCWWGG	3 cut(s)	1311, 2209, 2657
TaiI	ACGT	7 cut(s)	75, 214, 561, 1552, 2752, 3422, 3588
TaqI	TCGA	6 cut(s)	51, 268, 481, 2605, 2746, 3226
TatI	WGTACW	4 cut(s)	475, 1937, 2102, 3606
TseFI	GTSAC	4 cut(s)	3, 3685, 3726, 3802
TseI	GCWGC	9 cut(s)	505, 541, 663, 1885, 2705, 2711, 3137, 3386, 3506
Tsp45I	GTSAC	4 cut(s)	3, 3685, 3726, 3802
TspGWI	ACGGA	2 cut(s)	872, 1914
Van91I	CCANNNNNTGG	2 cut(s)	2450, 2495
VneI	GTGCAC	1 cut(s)	2469
VpaK11BI	GGWCC	4 cut(s)	1439, 1487, 1715, 2366
XagI	CCTNNNNNAGG	2 cut(s)	704, 2361
XapI	RAATTY	6 cut(s)	53, 161, 681, 931, 2936, 3559
XceI	RCATGY	1 cut(s)	2998
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2956
XhoI	CTCGAG	1 cut(s)	3225
XmiI	GTMKAC	2 cut(s)	69, 2746
ZrmI	AGTACT	1 cut(s)	2104
Zsp2I	ATGCAT	2 cut(s)	1267, 3312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.