pycom06g05960

Transaldolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0015990
Physical Location & Seq
Reverse (-)
9152373 .. 9159412
7040 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1173 bp
ATGACAATCTCTTTGCAATCTCCGCCCTCCTCAACCGTCTCCTCCTCGTTCCAGGGGACGAGGCTGAGGTTCTCCAATGGATCCCCACCTTCCAATTTACACTTCACCTTGCAGCGATCCTTTCCTCTCATTCGCGCTTCCACTCTCGACACCGGTTCAACCACTGAATTGGAAGCCGTTTCTAGCTACAGCGAGATCGTTCCTGACACCGTGATTTTCGATGACTTCGAGAGGTTTCCTCCAACTGCTGCAACTGTGAGCTCTTCTCTACTCTTGGGTATATGTAGCCTCCCCGATACAATCTTTAGAAATGCCGTGGATATGGCGCTGGCAGATTCGGAGTGTAATCTGCATGAAAACTCCAACGTGAGATTGTCATGTTTCGTCAACAAGGCTTTAGTGAATGTTGGTGGTGATTTGGCAAAACTAGTTCCTGGCCGAGTGTCTACTGAGGTGGATGCTCGTCTTGCTTATGACACGCATGGAATTATCAGAAAGGTGCATGACTTGCTGAAGTTGTACAATCAAGTTAATGTTCCTCCTGAGCGTTTGCTGTTCAAAATTCCTTCAACTTGGCAAGGAATAGAGGCTTCAAGATTACTGGAATCTGAGGGCATACAGACACATTTGACATTTGTGTACAGCTTTGCTCAAGCTGCAGCTGCAGCCCAAGCTGGCGCTTCTGTTATCCAGATTTTTGTTGGTCGTCTTAGGGATTGGTCTCGCAACCATTCTGGTGACCCTGAGATAGAAGCTGCTCTCAAAAGAGGGGAGGATCCTGGGTTAGCCTTGGTCACAAAGGCATATAACTACATTCACAAAAATGGACATAAATCAAAGTTGATGGCAGCAGCAGTTCGTAATAAGCAGGATCTATTCAGTCTCTTGGGGGTTGACTACATCATTGCACCGCTGAAGGTATTGCAATCACTCAAAGAATCCGTCACTACCCCTGAAGATAAGTACTCTTTCATCAGGAGGCTATCTCCACAAACTGCTGCCACCTACAAGTTCAATGAAGAAGAGCTTATCAAGTGGGATCAATTAAGCTTTGCATCAGCTGTGGGACCTGCAGCCGTGGAACTTCTTGCCAGCGGACTGGATGGTTATGCTAATCAAGCAAATCGAGTTGAGGAGTTATTTGAGAAGATTTGGCCACCTCCAAATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
TAL_FSA

Protein Analysis

391

Amino Acids

42.78

Weight (kDa)

5.95

Isoelectric Point (pI)

44.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAL_FSA PF00923 100 - 329 2.4e-46 Transaldolase/Fructose-6-phosphate aldolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015990)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12230 AT1G12230
fragaria_vesca FvH4_5g00280
malus_domestica MD06G1067000.v1.1
prunus_persica Prupe.5G075500_v2.0.a1
pyrus_communis pycom06g05960
rosa_chinensis RchiOBHm_Chr7g0202331
rosa_laevigata RLG00000003608
rosa_multiflora Rmu_sc0000266.1_g000004
rosa_roxburghii Rroxscaffold_3G00254660
rosa_rugosa Rorug07G0069900
rosa_samantha Rh7BG198400 Rh7CG208400 Rh7DG204100
rosa_wichuraiana Rw7G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1078
AccI GTMKAC 1 cut(s) 446
AccII CGCG 1 cut(s) 135
AciI CCGC 3 cut(s) 23, 911, 1095
AclWI GGATC 7 cut(s) 75, 88, 111, 770, 783, 879, 1047
AcoI YGGCCR 2 cut(s) 436, 1154
AcsI RAATTY 1 cut(s) 561
AcuI CTGAAG 3 cut(s) 533, 935, 975
AfaI GTAC 3 cut(s) 521, 641, 965
AgeI ACCGGT 1 cut(s) 152
AgsI TTSAA 5 cut(s) 159, 559, 570, 594, 1015
AhlI ACTAGT 1 cut(s) 427
AjnI CCWGG 3 cut(s) 51, 433, 778
AjuI GAANNNNNNNTTGG 2 cut(s) 86, 118
Alw21I GWGCWC 1 cut(s) 263
Alw26I GTCTC 3 cut(s) 43, 726, 887
AlwI GGATC 7 cut(s) 75, 88, 111, 770, 783, 879, 1047
AoxI GGCC 2 cut(s) 436, 1154
ApoI RAATTY 1 cut(s) 561
ArsI GACNNNNNNTTYG 3 cut(s) 27, 927, 959
AsiGI ACCGGT 1 cut(s) 152
AspLEI GCGC 3 cut(s) 137, 328, 680
AspS9I GGNCC 1 cut(s) 1067
AsuHPI GGTGA 3 cut(s) 97, 425, 749
AvaII GGWCC 1 cut(s) 1067
BalI TGGCCA 1 cut(s) 1156
BamHI GGATCC 2 cut(s) 80, 775
BanII GRGCYC 1 cut(s) 263
Bbv12I GWGCWC 1 cut(s) 263
BbvCI CCTCAGC 1 cut(s) 65
BccI CCATC 2 cut(s) 838, 1097
BceAI ACGGC 3 cut(s) 161, 299, 1061
BciT130I CCWGG 3 cut(s) 53, 435, 780
BcoDI GTCTC 3 cut(s) 43, 726, 887
BcuI ACTAGT 1 cut(s) 427
BfaI CTAG 2 cut(s) 183, 428
BfmI CTRYAG 4 cut(s) 187, 657, 663, 1071
BfoI RGCGCY 2 cut(s) 329, 681
BfuAI ACCTGC 1 cut(s) 1078
BmcAI AGTACT 1 cut(s) 965
Bme1390I CCNGG 3 cut(s) 53, 435, 780
Bme18I GGWCC 1 cut(s) 1067
BmgT120I GGNCC 1 cut(s) 1067
BmiI GGNNCC 3 cut(s) 82, 777, 1068
BmrFI CCNGG 3 cut(s) 53, 435, 780
BmsI GCATC 2 cut(s) 448, 1064
BplI GAGNNNNNCTC 6 cut(s) 223, 255, 250, 282, 970, 1002
Bpu10I CCTNAGC 2 cut(s) 65, 543
BpuEI CTTGAG 1 cut(s) 636
BsaI GGTCTC 1 cut(s) 726
BsaJI CCNNGG 5 cut(s) 52, 315, 779, 789, 1077
BsaWI WCCGGW 1 cut(s) 152
Bse118I RCCGGY 1 cut(s) 152
Bse1I ACTGG 2 cut(s) 606, 1104
Bse3DI GCAATG 1 cut(s) 903
BseBI CCWGG 3 cut(s) 53, 435, 780
BseDI CCNNGG 5 cut(s) 52, 315, 779, 789, 1077
BseGI GGATG 2 cut(s) 463, 1108
BseMI GCAATG 1 cut(s) 903
BseMII CTCAG 5 cut(s) 56, 441, 534, 600, 735
BseNI ACTGG 2 cut(s) 606, 1104
BseRI GAGGAG 4 cut(s) 19, 31, 34, 1148
Bsh1236I CGCG 1 cut(s) 135
BshFI GGCC 2 cut(s) 438, 1156
BshTI ACCGGT 1 cut(s) 152
BsiHKAI GWGCWC 1 cut(s) 263
BsiSI CCGG 1 cut(s) 153
BslFI GGGAC 2 cut(s) 70, 1080
BsmAI GTCTC 3 cut(s) 43, 726, 887
BsmBI CGTCTC 1 cut(s) 43
BsmFI GGGAC 2 cut(s) 70, 1080
BsnI GGCC 2 cut(s) 438, 1156
Bso31I GGTCTC 1 cut(s) 726
Bsp1286I GDGCHC 1 cut(s) 263
Bsp1407I TGTACA 2 cut(s) 519, 639
Bsp143I GATC 6 cut(s) 80, 116, 195, 775, 871, 1039
BspACI CCGC 3 cut(s) 23, 911, 1095
BspANI GGCC 2 cut(s) 438, 1156
BspCNI CTCAG 5 cut(s) 57, 442, 535, 601, 736
BspFNI CGCG 1 cut(s) 135
BspLI GGNNCC 3 cut(s) 82, 777, 1068
BspMAI CTGCAG 3 cut(s) 661, 667, 1075
BspMI ACCTGC 1 cut(s) 1078
BspPI GGATC 7 cut(s) 75, 88, 111, 770, 783, 879, 1047
BspQI GCTCTTC 2 cut(s) 268, 1017
BspTNI GGTCTC 1 cut(s) 726
BsrDI GCAATG 1 cut(s) 903
BsrFI RCCGGY 1 cut(s) 152
BsrGI TGTACA 2 cut(s) 519, 639
BsrI ACTGG 2 cut(s) 606, 1104
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 5 cut(s) 52, 315, 779, 789, 1077
BssMI GATC 6 cut(s) 80, 116, 195, 775, 871, 1039
BssT1I CCWWGG 1 cut(s) 789
Bst2UI CCWGG 3 cut(s) 53, 435, 780
Bst4CI ACNGT 3 cut(s) 37, 211, 256
Bst6I CTCTTC 2 cut(s) 268, 1017
BstAPI GCANNNNNTGC 1 cut(s) 508
BstAUI TGTACA 2 cut(s) 519, 639
BstC8I GCNNGC 3 cut(s) 330, 676, 1093
BstDEI CTNAG 6 cut(s) 65, 450, 543, 609, 710, 744
BstDSI CCRYGG 2 cut(s) 315, 1077
BstEII GGTNACC 1 cut(s) 737
BstF5I GGATG 2 cut(s) 463, 1108
BstFNI CGCG 1 cut(s) 135
BstH2I RGCGCY 2 cut(s) 329, 681
BstHHI GCGC 3 cut(s) 137, 328, 680
BstKTI GATC 6 cut(s) 83, 119, 198, 778, 874, 1042
BstMAI GTCTC 3 cut(s) 43, 726, 887
BstMBI GATC 6 cut(s) 80, 116, 195, 775, 871, 1039
BstMWI GCNNNNNNNGC 8 cut(s) 22, 467, 508, 656, 662, 665, 671, 1118
BstNI CCWGG 3 cut(s) 53, 435, 780
BstPI GGTNACC 1 cut(s) 737
BstSCI CCNGG 3 cut(s) 51, 433, 778
BstSFI CTRYAG 4 cut(s) 187, 657, 663, 1071
BstUI CGCG 1 cut(s) 135
BstX2I RGATCY 3 cut(s) 80, 775, 871
BstXI CCANNNNNNTGG 2 cut(s) 169, 1099
BstYI RGATCY 3 cut(s) 80, 775, 871
BsuRI GGCC 2 cut(s) 438, 1156
BtgI CCRYGG 2 cut(s) 315, 1077
BtsCI GGATG 2 cut(s) 463, 1108
BtsIMutI CAGTG 1 cut(s) 162
BveI ACCTGC 1 cut(s) 1078
Cac8I GCNNGC 3 cut(s) 330, 676, 1093
CfoI GCGC 3 cut(s) 137, 328, 680
Cfr10I RCCGGY 1 cut(s) 152
Cfr13I GGNCC 1 cut(s) 1067
Csp6I GTAC 3 cut(s) 520, 640, 964
CspAI ACCGGT 1 cut(s) 152
CviAII CATG 4 cut(s) 353, 378, 482, 503
CviQI GTAC 3 cut(s) 520, 640, 964
DdeI CTNAG 6 cut(s) 65, 450, 543, 609, 710, 744
DpnI GATC 6 cut(s) 82, 118, 197, 777, 873, 1041
DpnII GATC 6 cut(s) 80, 116, 195, 775, 871, 1039
EaeI YGGCCR 2 cut(s) 436, 1154
Eam1104I CTCTTC 2 cut(s) 268, 1017
EarI CTCTTC 2 cut(s) 268, 1017
EciI GGCGGA 1 cut(s) 12
Ecl136II GAGCTC 1 cut(s) 261
Eco130I CCWWGG 1 cut(s) 789
Eco24I GRGCYC 1 cut(s) 263
Eco31I GGTCTC 1 cut(s) 726
Eco47I GGWCC 1 cut(s) 1067
Eco53kI GAGCTC 1 cut(s) 261
Eco57I CTGAAG 3 cut(s) 533, 935, 975
Eco91I GGTNACC 1 cut(s) 737
EcoICRI GAGCTC 1 cut(s) 261
EcoO109I RGGNCCY 1 cut(s) 1067
EcoO65I GGTNACC 1 cut(s) 737
EcoRII CCWGG 3 cut(s) 51, 433, 778
EcoT14I CCWWGG 1 cut(s) 789
EcoT38I GRGCYC 1 cut(s) 263
ErhI CCWWGG 1 cut(s) 789
Esp3I CGTCTC 1 cut(s) 43
FaeI CATG 4 cut(s) 356, 381, 485, 506
FalI AAGNNNNNCTT 2 cut(s) 1011, 1043
FaqI GGGAC 2 cut(s) 70, 1080
FatI CATG 4 cut(s) 352, 377, 481, 502
FblI GTMKAC 1 cut(s) 446
FokI GGATG 2 cut(s) 470, 1115
FriOI GRGCYC 1 cut(s) 263
FspBI CTAG 2 cut(s) 183, 428
GlaI GCGC 3 cut(s) 136, 327, 679
HaeII RGCGCY 2 cut(s) 329, 681
HaeIII GGCC 2 cut(s) 438, 1156
HapII CCGG 1 cut(s) 153
HhaI GCGC 3 cut(s) 137, 328, 680
Hin1II CATG 4 cut(s) 356, 381, 485, 506
Hin6I GCGC 3 cut(s) 135, 326, 678
HinP1I GCGC 3 cut(s) 135, 326, 678
HincII GTYRAC 2 cut(s) 388, 895
HindII GTYRAC 2 cut(s) 388, 895
HindIII AAGCTT 1 cut(s) 1048
HinfI GANTC 3 cut(s) 335, 605, 938
HpaII CCGG 1 cut(s) 153
HphI GGTGA 3 cut(s) 97, 425, 749
Hpy166II GTNNAC 4 cut(s) 388, 447, 640, 895
Hpy188I TCNGA 3 cut(s) 340, 494, 610
Hpy188III TCNNGA 7 cut(s) 146, 203, 229, 542, 594, 691, 976
Hpy8I GTNNAC 4 cut(s) 388, 447, 640, 895
HpyAV CCTTC 3 cut(s) 99, 576, 910
HpyCH4III ACNGT 3 cut(s) 37, 211, 256
HpyCH4IV ACGT 1 cut(s) 366
HpyF10VI GCNNNNNNNGC 8 cut(s) 22, 467, 508, 656, 662, 665, 671, 1118
HpyF3I CTNAG 6 cut(s) 65, 450, 543, 609, 710, 744
HpySE526I ACGT 1 cut(s) 366
Hsp92II CATG 4 cut(s) 356, 381, 485, 506
HspAI GCGC 3 cut(s) 135, 326, 678
Kzo9I GATC 6 cut(s) 80, 116, 195, 775, 871, 1039
LguI GCTCTTC 2 cut(s) 268, 1017
LweI GCATC 2 cut(s) 448, 1064
MaeI CTAG 2 cut(s) 183, 428
MaeII ACGT 1 cut(s) 366
MaeIII GTNAC 3 cut(s) 737, 793, 943
MalI GATC 6 cut(s) 82, 118, 197, 777, 873, 1041
MboI GATC 6 cut(s) 80, 116, 195, 775, 871, 1039
MboII GAAGA 5 cut(s) 255, 968, 1031, 1034, 1159
MflI RGATCY 3 cut(s) 80, 775, 871
MhlI GDGCHC 1 cut(s) 263
MlsI TGGCCA 1 cut(s) 1156
MluCI AATT 5 cut(s) 94, 167, 486, 561, 1043
MluNI TGGCCA 1 cut(s) 1156
MmeI TCCRAC 2 cut(s) 266, 387
Mox20I TGGCCA 1 cut(s) 1156
MscI TGGCCA 1 cut(s) 1156
MseI TTAA 2 cut(s) 531, 1046
MslI CAYNNNNRTG 2 cut(s) 735, 822
Msp20I TGGCCA 1 cut(s) 1156
MspA1I CMGCKG 4 cut(s) 662, 913, 1061, 1095
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 3 cut(s) 53, 435, 780
MvaI CCWGG 3 cut(s) 53, 435, 780
MvnI CGCG 1 cut(s) 135
MwoI GCNNNNNNNGC 8 cut(s) 22, 467, 508, 656, 662, 665, 671, 1118
NdeII GATC 6 cut(s) 80, 116, 195, 775, 871, 1039
NlaIII CATG 4 cut(s) 356, 381, 485, 506
NlaIV GGNNCC 3 cut(s) 82, 777, 1068
NmeAIII GCCGAG 1 cut(s) 464
NmuCI GTSAC 3 cut(s) 737, 793, 943
PciSI GCTCTTC 2 cut(s) 268, 1017
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PfeI GAWTC 3 cut(s) 335, 605, 938
PinAI ACCGGT 1 cut(s) 152
PpuMI RGGWCCY 1 cut(s) 1067
Psp124BI GAGCTC 1 cut(s) 263
Psp5II RGGWCCY 1 cut(s) 1067
Psp6I CCWGG 3 cut(s) 51, 433, 778
PspEI GGTNACC 1 cut(s) 737
PspGI CCWGG 3 cut(s) 51, 433, 778
PspN4I GGNNCC 3 cut(s) 82, 777, 1068
PspPI GGNCC 1 cut(s) 1067
PspPPI RGGWCCY 1 cut(s) 1067
PstI CTGCAG 3 cut(s) 661, 667, 1075
PsuI RGATCY 3 cut(s) 80, 775, 871
PvuII CAGCTG 2 cut(s) 662, 1061
RsaI GTAC 3 cut(s) 521, 641, 965
RsaNI GTAC 3 cut(s) 520, 640, 964
RseI CAYNNNNRTG 2 cut(s) 735, 822
SacI GAGCTC 1 cut(s) 263
SapI GCTCTTC 2 cut(s) 268, 1017
SaqAI TTAA 2 cut(s) 531, 1046
Sau3AI GATC 6 cut(s) 80, 116, 195, 775, 871, 1039
Sau96I GGNCC 1 cut(s) 1067
ScaI AGTACT 1 cut(s) 965
ScrFI CCNGG 3 cut(s) 53, 435, 780
SduI GDGCHC 1 cut(s) 263
SfaNI GCATC 2 cut(s) 448, 1064
SfcI CTRYAG 4 cut(s) 187, 657, 663, 1071
SinI GGWCC 1 cut(s) 1067
SmiMI CAYNNNNRTG 2 cut(s) 735, 822
SmlI CTYRAG 1 cut(s) 651
SmoI CTYRAG 1 cut(s) 651
SpeI ACTAGT 1 cut(s) 427
Sse9I AATT 5 cut(s) 94, 167, 486, 561, 1043
SsiI CCGC 3 cut(s) 23, 911, 1095
SspMI CTAG 2 cut(s) 183, 428
SstI GAGCTC 1 cut(s) 263
StyD4I CCNGG 3 cut(s) 51, 433, 778
StyI CCWWGG 1 cut(s) 789
TaaI ACNGT 3 cut(s) 37, 211, 256
TaiI ACGT 1 cut(s) 369
TaqI TCGA 4 cut(s) 147, 219, 228, 1126
TasI AATT 5 cut(s) 94, 167, 486, 561, 1043
TatI WGTACW 3 cut(s) 519, 639, 963
TfiI GAWTC 3 cut(s) 335, 605, 938
Tru1I TTAA 2 cut(s) 531, 1046
Tru9I TTAA 2 cut(s) 531, 1046
TscAI CASTG 1 cut(s) 169
TseFI GTSAC 3 cut(s) 737, 793, 943
Tsp45I GTSAC 3 cut(s) 737, 793, 943
TspDTI ATGAA 3 cut(s) 369, 961, 1032
TspGWI ACGGA 1 cut(s) 931
TspRI CASTG 1 cut(s) 169
VpaK11BI GGWCC 1 cut(s) 1067
XapI RAATTY 1 cut(s) 561
XcmI CCANNNNNNNNNTGG 1 cut(s) 698
XmiI GTMKAC 1 cut(s) 446
XspI CTAG 2 cut(s) 183, 428
ZrmI AGTACT 1 cut(s) 965
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.