pycom06g06970

rhamnose biosynthetic enzyme

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
11334406 .. 11336042
1637 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1116 bp
ATGGCATCCACACTTCCATTTAAAAAAAATCTAAATTATCGCACTCGCCCACTCCGTCTCTCGTGTTCCCTCTACTTGTCTTGCCTCTATACAACACCCGCACCCCTCACTCCATTTCTCACGCAATCTCCAGATCCAAATCTCAAACACTCCTCAGCTCCCTCTCTCTCTCTATCTCTCCCCTTTCTCTCTCCTCTCTCTGTGGCGGTGGCAGCGATGGGGTTCCCATCCAACGGTGCCGAGAAGCCGCTCAAGTTTCTGATCTACGGCCGCACGGGCTGGATTGGCGGCCTCCTCGGCAAGCTCTGCGAGGCCCAATCAATCGACTACGTCTACGGCTCCGGCCGCCTCGAGAACCGCAGCTCGCTCGAGGCCGACATCACCAATATTAAGCCCACCCATATCTTCAACGCCGCTGGCGTCACCGGCCGCCCCAACGTCGACTGGTGCGAATCCCATAAGGTCGAGACCATCCGGACCAACGTGGTCGGCACCTTGACCCTTGCTGACGTCTGTAGGGAGCGCGGCCTGATCCTCATTAACTATGCGACCGGGTGCATTTTCGAGTACGATGCGGGTCACCCGCTCGGGTCGGGCATTGGGTTCAAGGAGGAGGACACCCCCAACTTTATCGGATCTTTCTATTCCAAGACCAAGGCCATGGTGGAAGATCTGCTCAACGATTTTGAGAACGTCTGTACTTTGCGTGTTAGAATGCCAATTTCATCCGACTTATGCAACCCCCGTAACTTCATCACGAAGATCACTCGATATGATAAGGTAGTTGACATTCCCAACTCCATGACGATCTTGGACGAACTCCTCCCCATTTCCATCGAGATGGCAAAGAGGAATCTCACGGGAATCTACAACTTTACAAACCCCGGAGTGGTCAGCCACAACGAGATCTTGGAGATGTACAAGGAATACATTGACCCCAGCTTCTCTTACAAGAACTTTACTCTCGAGGAGCAGGCAAAGGTGATTGTTGCTCCTAGGAGCAACAATGAACTTGACGCCTCGAAATTGAAGAAAGAATTCCCTAAACTCCTGTCGATCAAGGAATCTCTCATTAAGAACGTCTTCAAGCCAAACCAGAAGACTGCTACAGCTTAA

Protein Analysis

372

Amino Acids

41.24

Weight (kDa)

8.49

Isoelectric Point (pI)

34.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RmlD_sub_bind PF04321 85 - 257 1.8e-13 RmlD substrate binding domain
Epimerase PF01370 87 - 250 6.9e-11 NAD dependent epimerase/dehydratase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014012)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63000
fragaria_vesca FvH4_5g01300 FvH4_6g38001
malus_domestica MD04G1069500.v1.1 MD06G1070600.v1.1
prunus_persica Prupe.5G088400_v2.0.a1
pyrus_communis pycom06g06970
rosa_chinensis RchiOBHm_Chr7g0199641
rosa_laevigata RLG00000003780
rosa_multiflora Rmu_sc0009191.1_g000005
rosa_roxburghii Rroxscaffold_3G00256530
rosa_rugosa Rorug07G0055500
rosa_samantha Rh7AG180500 Rh7BG183500 Rh7CG190200 Rh7DG183400
rosa_wichuraiana Rw7G015860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 513
AccB1I GGYRCC 2 cut(s) 236, 491
AccBSI CCGCTC 2 cut(s) 250, 586
AccI GTMKAC 2 cut(s) 333, 441
AccII CGCG 1 cut(s) 525
AccIII TCCGGA 1 cut(s) 474
AclWI GGATC 3 cut(s) 128, 526, 643
AcoI YGGCCR 3 cut(s) 268, 343, 427
AcsI RAATTY 1 cut(s) 1037
AcyI GRCGYC 3 cut(s) 420, 510, 1017
AfaI GTAC 3 cut(s) 569, 700, 920
AfiI CCNNNNNNNGG 2 cut(s) 233, 889
AgsI TTSAA 4 cut(s) 409, 607, 1030, 1087
AluBI AGCT 5 cut(s) 158, 304, 363, 942, 1112
AluI AGCT 5 cut(s) 158, 304, 363, 942, 1112
Alw26I GTCTC 2 cut(s) 62, 461
AlwI GGATC 3 cut(s) 128, 526, 643
Ama87I CYCGRG 4 cut(s) 350, 368, 587, 965
Aor13HI TCCGGA 1 cut(s) 474
AoxI GGCC 8 cut(s) 268, 289, 312, 343, 372, 427, 526, 657
ApeKI GCWGC 2 cut(s) 212, 360
ApoI RAATTY 1 cut(s) 1037
Asp700I GAANNNNTTC 2 cut(s) 1037, 1082
AspA2I CCTAGG 1 cut(s) 995
AspLEI GCGC 1 cut(s) 525
AspS9I GGNCC 2 cut(s) 313, 477
AsuC2I CCSGG 2 cut(s) 553, 885
AsuHPI GGTGA 4 cut(s) 373, 415, 572, 994
AvaI CYCGRG 4 cut(s) 350, 368, 587, 965
AvaII GGWCC 1 cut(s) 477
AvrII CCTAGG 1 cut(s) 995
BanI GGYRCC 2 cut(s) 236, 491
BauI CACGAG 1 cut(s) 61
BbsI GAAGAC 2 cut(s) 1075, 1106
BbvCI CCTCAGC 1 cut(s) 154
BbvI GCAGC 2 cut(s) 224, 372
BccI CCATC 5 cut(s) 211, 235, 479, 835, 842
BceAI ACGGC 2 cut(s) 283, 352
BcgI CGANNNNNNTGC 4 cut(s) 349, 383, 554, 588
BcnI CCSGG 2 cut(s) 553, 885
BcoDI GTCTC 2 cut(s) 62, 461
BfaI CTAG 1 cut(s) 996
BfmI CTRYAG 2 cut(s) 514, 1107
BglI GCCNNNNNGGC 2 cut(s) 276, 297
BglII AGATCT 2 cut(s) 670, 906
BisI GCNGC 9 cut(s) 213, 248, 271, 289, 346, 361, 414, 430, 526
BlnI CCTAGG 1 cut(s) 995
BlsI GCNGC 9 cut(s) 214, 249, 272, 290, 347, 362, 415, 431, 527
Bme1390I CCNGG 2 cut(s) 553, 885
Bme18I GGWCC 1 cut(s) 477
BmeT110I CYCGRG 4 cut(s) 350, 368, 587, 965
BmgT120I GGNCC 2 cut(s) 313, 477
BmiI GGNNCC 4 cut(s) 224, 238, 340, 493
BmrFI CCNGG 2 cut(s) 553, 885
BmsI GCATC 2 cut(s) 14, 562
BpiI GAAGAC 2 cut(s) 1075, 1106
BpmI CTGGAG 1 cut(s) 114
Bpu10I CCTNAGC 1 cut(s) 154
BpuEI CTTGAG 1 cut(s) 236
BpuMI CCSGG 2 cut(s) 553, 885
BsaBI GATNNNNATC 1 cut(s) 138
BsaHI GRCGYC 3 cut(s) 420, 510, 1017
BsaI GGTCTC 1 cut(s) 461
BsaJI CCNNGG 5 cut(s) 295, 654, 660, 883, 995
BsaWI WCCGGW 1 cut(s) 474
BsaXI ACNNNNNCTCC 2 cut(s) 112, 142
Bsc4I CCNNNNNNNGG 2 cut(s) 233, 889
Bse118I RCCGGY 1 cut(s) 425
Bse1I ACTGG 1 cut(s) 449
Bse8I GATNNNNATC 1 cut(s) 138
BseAI TCCGGA 1 cut(s) 474
BseDI CCNNGG 5 cut(s) 295, 654, 660, 883, 995
BseGI GGATG 4 cut(s) 5, 227, 471, 725
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 2 cut(s) 233, 889
BseMII CTCAG 1 cut(s) 168
BseNI ACTGG 1 cut(s) 449
BseRI GAGGAG 6 cut(s) 142, 183, 284, 626, 812, 983
BseX3I CGGCCG 3 cut(s) 268, 343, 427
BseXI GCAGC 2 cut(s) 224, 372
BseYI CCCAGC 1 cut(s) 938
Bsh1236I CGCG 1 cut(s) 525
Bsh1285I CGRYCG 4 cut(s) 271, 346, 430, 552
BshFI GGCC 8 cut(s) 270, 291, 314, 345, 374, 429, 528, 659
BshNI GGYRCC 2 cut(s) 236, 491
BsiEI CGRYCG 4 cut(s) 271, 346, 430, 552
BsiHKCI CYCGRG 4 cut(s) 350, 368, 587, 965
BsiSI CCGG 5 cut(s) 342, 426, 475, 552, 885
BslI CCNNNNNNNGG 2 cut(s) 233, 889
BsmAI GTCTC 2 cut(s) 62, 461
BsmBI CGTCTC 1 cut(s) 62
BsmI GAATGC 1 cut(s) 720
BsnI GGCC 8 cut(s) 270, 291, 314, 345, 374, 429, 528, 659
Bso31I GGTCTC 1 cut(s) 461
BsoBI CYCGRG 4 cut(s) 350, 368, 587, 965
Bsp13I TCCGGA 1 cut(s) 474
Bsp1407I TGTACA 1 cut(s) 918
Bsp143I GATC 9 cut(s) 133, 261, 531, 635, 670, 762, 807, 906, 1056
Bsp19I CCATGG 1 cut(s) 660
BspANI GGCC 8 cut(s) 270, 291, 314, 345, 374, 429, 528, 659
BspCNI CTCAG 1 cut(s) 167
BspEI TCCGGA 1 cut(s) 474
BspFNI CGCG 1 cut(s) 525
BspLI GGNNCC 4 cut(s) 224, 238, 340, 493
BspPI GGATC 3 cut(s) 128, 526, 643
BspT107I GGYRCC 2 cut(s) 236, 491
BspTNI GGTCTC 1 cut(s) 461
BsrBI CCGCTC 2 cut(s) 250, 586
BsrFI RCCGGY 1 cut(s) 425
BsrGI TGTACA 1 cut(s) 918
BsrI ACTGG 1 cut(s) 449
BssAI RCCGGY 1 cut(s) 425
BssECI CCNNGG 5 cut(s) 295, 654, 660, 883, 995
BssMI GATC 9 cut(s) 133, 261, 531, 635, 670, 762, 807, 906, 1056
BssNI GRCGYC 3 cut(s) 420, 510, 1017
BssSI CACGAG 1 cut(s) 61
BssT1I CCWWGG 3 cut(s) 654, 660, 995
Bst2BI CACGAG 1 cut(s) 61
Bst4CI ACNGT 1 cut(s) 236
BstACI GRCGYC 3 cut(s) 420, 510, 1017
BstAPI GCANNNNNTGC 1 cut(s) 306
BstAUI TGTACA 1 cut(s) 918
BstC8I GCNNGC 4 cut(s) 302, 365, 418, 975
BstDEI CTNAG 1 cut(s) 154
BstDSI CCRYGG 1 cut(s) 660
BstEII GGTNACC 1 cut(s) 578
BstF5I GGATG 4 cut(s) 5, 227, 471, 725
BstFNI CGCG 1 cut(s) 525
BstHHI GCGC 1 cut(s) 525
BstKTI GATC 9 cut(s) 136, 264, 534, 638, 673, 765, 810, 909, 1059
BstMAI GTCTC 2 cut(s) 62, 461
BstMBI GATC 9 cut(s) 133, 261, 531, 635, 670, 762, 807, 906, 1056
BstMCI CGRYCG 4 cut(s) 271, 346, 430, 552
BstMWI GCNNNNNNNGC 7 cut(s) 212, 276, 285, 297, 306, 345, 426
BstPI GGTNACC 1 cut(s) 578
BstSCI CCNGG 2 cut(s) 551, 883
BstSFI CTRYAG 2 cut(s) 514, 1107
BstUI CGCG 1 cut(s) 525
BstV1I GCAGC 2 cut(s) 224, 372
BstV2I GAAGAC 2 cut(s) 1075, 1106
BstX2I RGATCY 4 cut(s) 133, 635, 670, 906
BstXI CCANNNNNNTGG 2 cut(s) 661, 841
BstYI RGATCY 4 cut(s) 133, 635, 670, 906
BstZI CGGCCG 3 cut(s) 268, 343, 427
BsuRI GGCC 8 cut(s) 270, 291, 314, 345, 374, 429, 528, 659
BtgI CCRYGG 1 cut(s) 660
BtgZI GCGATG 1 cut(s) 230
BtsCI GGATG 4 cut(s) 5, 227, 471, 725
Cac8I GCNNGC 4 cut(s) 302, 365, 418, 975
CfoI GCGC 1 cut(s) 525
Cfr10I RCCGGY 1 cut(s) 425
Cfr13I GGNCC 2 cut(s) 313, 477
CseI GACGC 2 cut(s) 409, 1025
Csp6I GTAC 3 cut(s) 568, 699, 919
CviAII CATG 2 cut(s) 661, 802
CviQI GTAC 3 cut(s) 568, 699, 919
DdeI CTNAG 1 cut(s) 154
DpnI GATC 9 cut(s) 135, 263, 533, 637, 672, 764, 809, 908, 1058
DpnII GATC 9 cut(s) 133, 261, 531, 635, 670, 762, 807, 906, 1056
DraI TTTAAA 1 cut(s) 22
EaeI YGGCCR 3 cut(s) 268, 343, 427
EagI CGGCCG 3 cut(s) 268, 343, 427
EclXI CGGCCG 3 cut(s) 268, 343, 427
Eco130I CCWWGG 3 cut(s) 654, 660, 995
Eco31I GGTCTC 1 cut(s) 461
Eco47I GGWCC 1 cut(s) 477
Eco52I CGGCCG 3 cut(s) 268, 343, 427
Eco88I CYCGRG 4 cut(s) 350, 368, 587, 965
Eco91I GGTNACC 1 cut(s) 578
EcoO65I GGTNACC 1 cut(s) 578
EcoRI GAATTC 1 cut(s) 1037
EcoT14I CCWWGG 3 cut(s) 654, 660, 995
ErhI CCWWGG 3 cut(s) 654, 660, 995
Esp3I CGTCTC 1 cut(s) 62
FaeI CATG 2 cut(s) 664, 805
FaiI YATR 8 cut(s) 90, 402, 459, 546, 662, 736, 774, 803
FalI AAGNNNNNCTT 2 cut(s) 1067, 1099
FatI CATG 2 cut(s) 660, 801
FauI CCCGC 3 cut(s) 106, 568, 591
FblI GTMKAC 2 cut(s) 333, 441
Fnu4HI GCNGC 9 cut(s) 213, 248, 271, 289, 346, 361, 414, 430, 526
FokI GGATG 3 cut(s) 214, 458, 712
Fsp4HI GCNGC 9 cut(s) 213, 248, 271, 289, 346, 361, 414, 430, 526
FspBI CTAG 1 cut(s) 996
GlaI GCGC 1 cut(s) 524
GluI GCNGC 9 cut(s) 213, 248, 271, 289, 346, 361, 414, 430, 526
GsaI CCCAGC 1 cut(s) 942
GsuI CTGGAG 1 cut(s) 114
HaeIII GGCC 8 cut(s) 270, 291, 314, 345, 374, 429, 528, 659
HapII CCGG 5 cut(s) 342, 426, 475, 552, 885
HgaI GACGC 2 cut(s) 409, 1025
HhaI GCGC 1 cut(s) 525
Hin1I GRCGYC 3 cut(s) 420, 510, 1017
Hin1II CATG 2 cut(s) 664, 805
Hin6I GCGC 1 cut(s) 523
HinP1I GCGC 1 cut(s) 523
HincII GTYRAC 2 cut(s) 442, 787
HindII GTYRAC 2 cut(s) 442, 787
HinfI GANTC 4 cut(s) 452, 853, 864, 1064
HpaII CCGG 5 cut(s) 342, 426, 475, 552, 885
HphI GGTGA 4 cut(s) 373, 415, 572, 994
Hpy166II GTNNAC 3 cut(s) 334, 442, 787
Hpy188I TCNGA 3 cut(s) 261, 635, 730
Hpy188III TCNNGA 7 cut(s) 131, 352, 466, 475, 757, 838, 965
Hpy8I GTNNAC 3 cut(s) 334, 442, 787
Hpy99I CGWCG 1 cut(s) 443
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4IV ACGT 6 cut(s) 330, 438, 483, 510, 693, 1080
HpyCH4V TGCA 2 cut(s) 558, 738
HpyF10VI GCNNNNNNNGC 7 cut(s) 212, 276, 285, 297, 306, 345, 426
HpyF3I CTNAG 1 cut(s) 154
HpySE526I ACGT 6 cut(s) 330, 438, 483, 510, 693, 1080
Hsp92I GRCGYC 3 cut(s) 420, 510, 1017
Hsp92II CATG 2 cut(s) 664, 805
HspAI GCGC 1 cut(s) 523
Kpn2I TCCGGA 1 cut(s) 474
Kzo9I GATC 9 cut(s) 133, 261, 531, 635, 670, 762, 807, 906, 1056
LmnI GCTCC 6 cut(s) 163, 344, 520, 970, 997, 999
Lsp1109I GCAGC 2 cut(s) 224, 372
LweI GCATC 2 cut(s) 14, 562
MaeI CTAG 1 cut(s) 996
MaeII ACGT 6 cut(s) 330, 438, 483, 510, 693, 1080
MaeIII GTNAC 3 cut(s) 421, 578, 746
MalI GATC 9 cut(s) 135, 263, 533, 637, 672, 764, 809, 908, 1058
MbiI CCGCTC 2 cut(s) 250, 586
MboI GATC 9 cut(s) 133, 261, 531, 635, 670, 762, 807, 906, 1056
MboII GAAGA 6 cut(s) 397, 680, 772, 1042, 1075, 1111
MflI RGATCY 4 cut(s) 133, 635, 670, 906
MluCI AATT 4 cut(s) 34, 720, 1025, 1037
MmeI TCCRAC 2 cut(s) 255, 753
MroI TCCGGA 1 cut(s) 474
MroXI GAANNNNTTC 2 cut(s) 1037, 1082
MseI TTAA 5 cut(s) 21, 390, 540, 1074, 1114
MslI CAYNNNNRTG 1 cut(s) 839
MspA1I CMGCKG 1 cut(s) 416
MspI CCGG 5 cut(s) 342, 426, 475, 552, 885
MspR9I CCNGG 2 cut(s) 553, 885
Mva1269I GAATGC 1 cut(s) 720
MvnI CGCG 1 cut(s) 525
MwoI GCNNNNNNNGC 7 cut(s) 212, 276, 285, 297, 306, 345, 426
NciI CCSGG 2 cut(s) 553, 885
NcoI CCATGG 1 cut(s) 660
NdeII GATC 9 cut(s) 133, 261, 531, 635, 670, 762, 807, 906, 1056
NlaIII CATG 2 cut(s) 664, 805
NlaIV GGNNCC 4 cut(s) 224, 238, 340, 493
NmeAIII GCCGAG 2 cut(s) 265, 276
NmuCI GTSAC 2 cut(s) 421, 578
PaeR7I CTCGAG 3 cut(s) 350, 368, 965
PcsI WCGNNNNNNNCGW 3 cut(s) 52, 417, 447
PctI GAATGC 1 cut(s) 720
PdmI GAANNNNTTC 2 cut(s) 1037, 1082
PfeI GAWTC 4 cut(s) 452, 853, 864, 1064
PflFI GACNNNGTC 1 cut(s) 329
PkrI GCNGC 9 cut(s) 214, 249, 272, 290, 347, 362, 415, 431, 527
PspEI GGTNACC 1 cut(s) 578
PspFI CCCAGC 1 cut(s) 938
PspN4I GGNNCC 4 cut(s) 224, 238, 340, 493
PspPI GGNCC 2 cut(s) 313, 477
PspXI VCTCGAGB 1 cut(s) 368
PsuI RGATCY 4 cut(s) 133, 635, 670, 906
PsyI GACNNNGTC 1 cut(s) 329
RsaI GTAC 3 cut(s) 569, 700, 920
RsaNI GTAC 3 cut(s) 568, 699, 919
RseI CAYNNNNRTG 1 cut(s) 839
SalI GTCGAC 1 cut(s) 440
SaqAI TTAA 5 cut(s) 21, 390, 540, 1074, 1114
SatI GCNGC 9 cut(s) 213, 248, 271, 289, 346, 361, 414, 430, 526
Sau3AI GATC 9 cut(s) 133, 261, 531, 635, 670, 762, 807, 906, 1056
Sau96I GGNCC 2 cut(s) 313, 477
ScrFI CCNGG 2 cut(s) 553, 885
SfaNI GCATC 2 cut(s) 14, 562
SfcI CTRYAG 2 cut(s) 514, 1107
Sfr274I CTCGAG 3 cut(s) 350, 368, 965
SinI GGWCC 1 cut(s) 477
SlaI CTCGAG 3 cut(s) 350, 368, 965
SmiMI CAYNNNNRTG 1 cut(s) 839
SmlI CTYRAG 4 cut(s) 251, 350, 368, 965
SmoI CTYRAG 4 cut(s) 251, 350, 368, 965
Sse9I AATT 4 cut(s) 34, 720, 1025, 1037
SspI AATATT 1 cut(s) 388
SspMI CTAG 1 cut(s) 996
StyD4I CCNGG 2 cut(s) 551, 883
StyI CCWWGG 3 cut(s) 654, 660, 995
TaaI ACNGT 1 cut(s) 236
TaiI ACGT 6 cut(s) 333, 441, 486, 513, 696, 1083
TasI AATT 4 cut(s) 34, 720, 1025, 1037
TatI WGTACW 2 cut(s) 698, 918
TauI GCSGC 7 cut(s) 250, 273, 291, 348, 416, 432, 528
TfiI GAWTC 4 cut(s) 452, 853, 864, 1064
Tru1I TTAA 5 cut(s) 21, 390, 540, 1074, 1114
Tru9I TTAA 5 cut(s) 21, 390, 540, 1074, 1114
TseFI GTSAC 2 cut(s) 421, 578
TseI GCWGC 2 cut(s) 212, 360
Tsp45I GTSAC 2 cut(s) 421, 578
TspDTI ATGAA 3 cut(s) 714, 742, 1023
TspGWI ACGGA 1 cut(s) 44
Tth111I GACNNNGTC 1 cut(s) 329
VpaK11BI GGWCC 1 cut(s) 477
XapI RAATTY 1 cut(s) 1037
XcmI CCANNNNNNNNNTGG 2 cut(s) 661, 808
XhoI CTCGAG 3 cut(s) 350, 368, 965
XmaJI CCTAGG 1 cut(s) 995
XmiI GTMKAC 2 cut(s) 333, 441
XmnI GAANNNNTTC 2 cut(s) 1037, 1082
XspI CTAG 1 cut(s) 996
ZraI GACGTC 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.