Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0016326

Physical Location & Seq

Genomic Coordinates Forward (+)

12375945 .. 12376313

Gene Structure 369 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGAGGCAACCAGGAAGGTATTCGAGATTGATGATGTGTGGAGGCATAACGGGGAGATCGGGCCCCCACTCGTTGCCCTTGGCGAGGATCAAGAAGATCATGAAGAATTCTGGGGAGGACGTGAAGATGATATCAGGAGAGGCTCCAATTGTGTTCTCAAAGGCGTGTGAATTGTTCATAGAGGAGCTCACCAGGAGGTCTTGGATGACTACCCAACAAGGGAAGAGAAGGACACTGCACAAAGAGGACATCGAATCCGCTGTCGTAGGCACCGATATCTTTGATTTTCTTGTGAGTTTGGTTTCGGATTCTTGCAATTCGGAGGATATCATCACGCCAGTGGGAATTGAAACATTAGACGAGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0003712 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010099 GO:0010228 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0048518 GO:0048571 GO:0048573 GO:0048574 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0140110 GO:1900140 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000306 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

123

Amino Acids

13.58

Weight (kDa)

6.11

Isoelectric Point (pI)

68.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	23 - 88	2.1e-15	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	24 - 88	1.2e-19	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016326)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g01980
malus_domestica	MD06G1078500.v1.1
prunus_persica	Prupe.5G096000_v2.0.a1
pyrus_communis	pycom06g07580 pycom06g07590
rosa_chinensis	RchiOBHm_Chr7g0198391
rosa_laevigata	RLG00000003871
rosa_multiflora	Rmu_sc0001250.1_g000014
rosa_roxburghii	Rroxscaffold_3G00257730
rosa_rugosa	Rorug07G0047700
rosa_samantha	Rh7AG171400 Rh7BG174100 Rh7CG180200 Rh7DG173300
rosa_wichuraiana	Rw7G014960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	269
AciI	CCGC	1 cut(s)	258
AclWI	GGATC	1 cut(s)	95
AcsI	RAATTY	1 cut(s)	106
AfiI	CCNNNNNNNGG	2 cut(s)	84, 219
AgsI	TTSAA	1 cut(s)	350
AjiI	CACGTC	1 cut(s)	121
AjnI	CCWGG	2 cut(s)	10, 191
AleI	CACNNNNGTG	1 cut(s)	338
AluBI	AGCT	1 cut(s)	187
AluI	AGCT	1 cut(s)	187
Alw21I	GWGCWC	1 cut(s)	189
AlwI	GGATC	1 cut(s)	95
AoxI	GGCC	1 cut(s)	61
ApaI	GGGCCC	1 cut(s)	65
ApoI	RAATTY	1 cut(s)	106
ArsI	GACNNNNNNTTYG	2 cut(s)	246, 278
Asp700I	GAANNNNTTC	1 cut(s)	19
AspS9I	GGNCC	2 cut(s)	61, 62
AsuHPI	GGTGA	1 cut(s)	181
BaeGI	GKGCMC	1 cut(s)	65
BanI	GGYRCC	1 cut(s)	269
BanII	GRGCYC	2 cut(s)	65, 189
Bbv12I	GWGCWC	1 cut(s)	189
BciT130I	CCWGG	2 cut(s)	12, 193
Bme1390I	CCNGG	2 cut(s)	12, 193
BmgBI	CACGTC	1 cut(s)	121
BmgT120I	GGNCC	2 cut(s)	61, 62
BmiI	GGNNCC	4 cut(s)	63, 64, 144, 271
BmrFI	CCNGG	2 cut(s)	12, 193
BsaJI	CCNNGG	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 219
Bse1I	ACTGG	1 cut(s)	338
BseBI	CCWGG	2 cut(s)	12, 193
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	1 cut(s)	210
BseLI	CCNNNNNNNGG	2 cut(s)	84, 219
BseNI	ACTGG	1 cut(s)	338
BseRI	GAGGAG	1 cut(s)	197
BseSI	GKGCMC	1 cut(s)	65
BsgI	GTGCAG	1 cut(s)	221
BshFI	GGCC	1 cut(s)	63
BshNI	GGYRCC	1 cut(s)	269
BsiHKAI	GWGCWC	1 cut(s)	189
BslI	CCNNNNNNNGG	2 cut(s)	84, 219
BsnI	GGCC	1 cut(s)	63
Bsp120I	GGGCCC	1 cut(s)	61
Bsp1286I	GDGCHC	2 cut(s)	65, 189
Bsp143I	GATC	3 cut(s)	56, 87, 96
BspACI	CCGC	1 cut(s)	258
BspANI	GGCC	1 cut(s)	63
BspHI	TCATGA	1 cut(s)	99
BspLI	GGNNCC	4 cut(s)	63, 64, 144, 271
BspPI	GGATC	1 cut(s)	95
BspT107I	GGYRCC	1 cut(s)	269
BsrI	ACTGG	1 cut(s)	338
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	3 cut(s)	56, 87, 96
BssT1I	CCWWGG	1 cut(s)	78
Bst2UI	CCWGG	2 cut(s)	12, 193
Bst6I	CTCTTC	1 cut(s)	218
BstENI	CCTNNNNNAGG	1 cut(s)	82
BstF5I	GGATG	1 cut(s)	210
BstKTI	GATC	3 cut(s)	59, 90, 99
BstMBI	GATC	3 cut(s)	56, 87, 96
BstNI	CCWGG	2 cut(s)	12, 193
BstSCI	CCNGG	2 cut(s)	10, 191
BstSLI	GKGCMC	1 cut(s)	65
BsuRI	GGCC	1 cut(s)	63
BtrI	CACGTC	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	210
BtsI	GCAGTG	1 cut(s)	233
BtsIMutI	CAGTG	2 cut(s)	233, 345
CciI	TCATGA	1 cut(s)	99
Cfr13I	GGNCC	2 cut(s)	61, 62
CviAII	CATG	1 cut(s)	100
CviJI	RGCY	3 cut(s)	63, 143, 187
CviKI_1	RGCY	3 cut(s)	63, 143, 187
DpnI	GATC	3 cut(s)	58, 89, 98
DpnII	GATC	3 cut(s)	56, 87, 96
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
Ecl136II	GAGCTC	1 cut(s)	187
Eco130I	CCWWGG	1 cut(s)	78
Eco24I	GRGCYC	2 cut(s)	65, 189
Eco32I	GATATC	3 cut(s)	132, 277, 328
Eco53kI	GAGCTC	1 cut(s)	187
EcoICRI	GAGCTC	1 cut(s)	187
EcoNI	CCTNNNNNAGG	1 cut(s)	82
EcoO109I	RGGNCCY	1 cut(s)	62
EcoRI	GAATTC	1 cut(s)	106
EcoRII	CCWGG	2 cut(s)	10, 191
EcoRV	GATATC	3 cut(s)	132, 277, 328
EcoT14I	CCWWGG	1 cut(s)	78
EcoT38I	GRGCYC	2 cut(s)	65, 189
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	1 cut(s)	103
FaiI	YATR	4 cut(s)	47, 101, 179, 367
FatI	CATG	1 cut(s)	99
FokI	GGATG	1 cut(s)	217
FriOI	GRGCYC	2 cut(s)	65, 189
HaeIII	GGCC	1 cut(s)	63
Hin1II	CATG	1 cut(s)	103
HinfI	GANTC	3 cut(s)	254, 308, 362
HphI	GGTGA	1 cut(s)	181
Hpy188I	TCNGA	2 cut(s)	307, 322
Hpy188III	TCNNGA	4 cut(s)	24, 91, 100, 135
HpyAV	CCTTC	2 cut(s)	9, 222
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	2 cut(s)	238, 315
HpySE526I	ACGT	1 cut(s)	120
Hsp92II	CATG	1 cut(s)	103
Kzo9I	GATC	3 cut(s)	56, 87, 96
LmnI	GCTCC	2 cut(s)	148, 184
LpnPI	CCDG	6 cut(s)	24, 96, 120, 178, 205, 351
MaeII	ACGT	1 cut(s)	120
MalI	GATC	3 cut(s)	58, 89, 98
MboI	GATC	3 cut(s)	56, 87, 96
MboII	GAAGA	4 cut(s)	106, 115, 136, 235
MfeI	CAATTG	1 cut(s)	147
MhlI	GDGCHC	2 cut(s)	65, 189
MluCI	AATT	5 cut(s)	106, 147, 170, 316, 345
MnlI	CCTC	8 cut(s)	35, 78, 109, 133, 175, 189, 238, 316
MroXI	GAANNNNTTC	1 cut(s)	19
MslI	CAYNNNNRTG	1 cut(s)	338
MspA1I	CMGCKG	1 cut(s)	260
MspR9I	CCNGG	2 cut(s)	12, 193
MunI	CAATTG	1 cut(s)	147
MvaI	CCWGG	2 cut(s)	12, 193
NdeII	GATC	3 cut(s)	56, 87, 96
NlaIII	CATG	1 cut(s)	103
NlaIV	GGNNCC	4 cut(s)	63, 64, 144, 271
OliI	CACNNNNGTG	1 cut(s)	338
PagI	TCATGA	1 cut(s)	99
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PdmI	GAANNNNTTC	1 cut(s)	19
PfeI	GAWTC	2 cut(s)	254, 308
Psp124BI	GAGCTC	1 cut(s)	189
Psp6I	CCWGG	2 cut(s)	10, 191
PspGI	CCWGG	2 cut(s)	10, 191
PspN4I	GGNNCC	4 cut(s)	63, 64, 144, 271
PspOMI	GGGCCC	1 cut(s)	61
PspPI	GGNCC	2 cut(s)	61, 62
RseI	CAYNNNNRTG	1 cut(s)	338
SacI	GAGCTC	1 cut(s)	189
Sau3AI	GATC	3 cut(s)	56, 87, 96
Sau96I	GGNCC	2 cut(s)	61, 62
ScrFI	CCNGG	2 cut(s)	12, 193
SduI	GDGCHC	2 cut(s)	65, 189
SetI	ASST	4 cut(s)	20, 123, 189, 200
SmiMI	CAYNNNNRTG	1 cut(s)	338
Sse9I	AATT	5 cut(s)	106, 147, 170, 316, 345
SsiI	CCGC	1 cut(s)	258
SstI	GAGCTC	1 cut(s)	189
StyD4I	CCNGG	2 cut(s)	10, 191
StyI	CCWWGG	1 cut(s)	78
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	2 cut(s)	23, 252
TasI	AATT	5 cut(s)	106, 147, 170, 316, 345
TfiI	GAWTC	2 cut(s)	254, 308
TscAI	CASTG	2 cut(s)	240, 345
TspDTI	ATGAA	2 cut(s)	116, 166
TspRI	CASTG	2 cut(s)	240, 345
XagI	CCTNNNNNAGG	1 cut(s)	82
XapI	RAATTY	1 cut(s)	106
XmnI	GAANNNNTTC	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.