pycom06g09920

Peptidase inhibitor I9

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0016279
Physical Location & Seq
Reverse (-)
15229413 .. 15229902
490 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g09920.1

Sequence Viewer

Length: 288 bp
ATGGAAGGTACAAAAAGCGAGTCATACTTTGTTTTCATGAACTATGATCCTCAGTACGAACGCCTTCGAGCTGATCGAACAAAGAGAGGAGCAAATGAGCTAGATTTGTACCTAAGCCGGAAGCATGACCAGTTGTTGGCAAGAACCCTTGAGCCAGGAAGCTATAAGAAGACATTGTCTCTCGTCATTGTTGATGGGTTTTCTGTGGAAATTACTGAGGACCAGGCCAGTGTGCTTAGATCTGCAAAAGAAGTGAGACTAGTGGAGAAAAATCAAGAGCTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9

Protein Analysis

96

Amino Acids

10.99

Weight (kDa)

5.84

Isoelectric Point (pI)

33.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016279)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g01740 FvH4_5g04420 FvH4_5g04420 FvH4_5g04420
malus_domestica MD06G1104700.v1.1 MD14G1123400.v1.1
prunus_persica Prupe.5G117300_v2.0.a1
pyrus_communis pycom06g09920
rosa_chinensis RchiOBHm_Chr7g0195121
rosa_multiflora Rmu_sc0002381.1_g000027
rosa_rugosa Rorug07G0020900
rosa_samantha Rh7AG148300 Rh7BG149100 Rh7CG152500
rosa_wichuraiana Rw7G012660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 136
AclWI GGATC 1 cut(s) 41
AfaI GTAC 3 cut(s) 10, 56, 110
AfiI CCNNNNNNNGG 1 cut(s) 136
AhlI ACTAGT 1 cut(s) 259
AjnI CCWGG 2 cut(s) 154, 222
AluBI AGCT 4 cut(s) 71, 100, 162, 280
AluI AGCT 4 cut(s) 71, 100, 162, 280
Alw26I GTCTC 2 cut(s) 183, 250
AlwI GGATC 1 cut(s) 41
AoxI GGCC 1 cut(s) 225
ArsI GACNNNNNNTTYG 1 cut(s) 37
Asp700I GAANNNNTTC 1 cut(s) 63
AspS9I GGNCC 1 cut(s) 220
AvaII GGWCC 1 cut(s) 220
BbsI GAAGAC 1 cut(s) 176
BccI CCATC 1 cut(s) 188
BciT130I CCWGG 2 cut(s) 156, 224
BcoDI GTCTC 2 cut(s) 183, 250
BcuI ACTAGT 1 cut(s) 259
BfaI CTAG 2 cut(s) 101, 260
BglII AGATCT 1 cut(s) 239
Bme1390I CCNGG 2 cut(s) 156, 224
Bme18I GGWCC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 220
BmrFI CCNGG 2 cut(s) 156, 224
BpiI GAAGAC 1 cut(s) 176
Bpu10I CCTNAGC 1 cut(s) 113
BpuEI CTTGAG 1 cut(s) 170
Bsc4I CCNNNNNNNGG 1 cut(s) 136
Bse1I ACTGG 2 cut(s) 130, 228
BseBI CCWGG 2 cut(s) 156, 224
BseLI CCNNNNNNNGG 1 cut(s) 136
BseMII CTCAG 2 cut(s) 65, 207
BseNI ACTGG 2 cut(s) 130, 228
BseRI GAGGAG 1 cut(s) 102
BshFI GGCC 1 cut(s) 227
BsiSI CCGG 1 cut(s) 118
BslI CCNNNNNNNGG 1 cut(s) 136
BsmAI GTCTC 2 cut(s) 183, 250
BsnI GGCC 1 cut(s) 227
Bsp143I GATC 3 cut(s) 46, 73, 239
BspANI GGCC 1 cut(s) 227
BspCNI CTCAG 2 cut(s) 64, 208
BspHI TCATGA 1 cut(s) 36
BspPI GGATC 1 cut(s) 41
BsrI ACTGG 2 cut(s) 130, 228
BssMI GATC 3 cut(s) 46, 73, 239
Bst2UI CCWGG 2 cut(s) 156, 224
BstC8I GCNNGC 1 cut(s) 282
BstDEI CTNAG 4 cut(s) 51, 113, 216, 236
BstKTI GATC 3 cut(s) 49, 76, 242
BstMAI GTCTC 2 cut(s) 183, 250
BstMBI GATC 3 cut(s) 46, 73, 239
BstNI CCWGG 2 cut(s) 156, 224
BstSCI CCNGG 2 cut(s) 154, 222
BstV2I GAAGAC 1 cut(s) 176
BstX2I RGATCY 1 cut(s) 239
BstYI RGATCY 1 cut(s) 239
BsuRI GGCC 1 cut(s) 227
BtsIMutI CAGTG 1 cut(s) 235
Cac8I GCNNGC 1 cut(s) 282
CciI TCATGA 1 cut(s) 36
Cfr13I GGNCC 1 cut(s) 220
Csp6I GTAC 3 cut(s) 9, 55, 109
CviAII CATG 2 cut(s) 37, 125
CviJI RGCY 7 cut(s) 71, 100, 117, 154, 162, 227, 280
CviKI_1 RGCY 7 cut(s) 71, 100, 117, 154, 162, 227, 280
CviQI GTAC 3 cut(s) 9, 55, 109
DdeI CTNAG 4 cut(s) 51, 113, 216, 236
DpnI GATC 3 cut(s) 48, 75, 241
DpnII GATC 3 cut(s) 46, 73, 239
Eco47I GGWCC 1 cut(s) 220
EcoRII CCWGG 2 cut(s) 154, 222
FaeI CATG 2 cut(s) 40, 128
FaiI YATR 5 cut(s) 25, 38, 45, 126, 165
FatI CATG 2 cut(s) 36, 124
FspBI CTAG 2 cut(s) 101, 260
HaeIII GGCC 1 cut(s) 227
HapII CCGG 1 cut(s) 118
Hin1II CATG 2 cut(s) 40, 128
HinfI GANTC 1 cut(s) 20
HpaII CCGG 1 cut(s) 118
Hpy188III TCNNGA 2 cut(s) 37, 275
HpyAV CCTTC 1 cut(s) 74
HpyCH4V TGCA 1 cut(s) 245
HpyF3I CTNAG 4 cut(s) 51, 113, 216, 236
Hsp92II CATG 2 cut(s) 40, 128
Kzo9I GATC 3 cut(s) 46, 73, 239
LmnI GCTCC 1 cut(s) 89
LpnPI CCDG 7 cut(s) 131, 141, 143, 168, 209, 236, 241
MaeI CTAG 2 cut(s) 101, 260
MalI GATC 3 cut(s) 48, 75, 241
MboI GATC 3 cut(s) 46, 73, 239
MboII GAAGA 1 cut(s) 181
MflI RGATCY 1 cut(s) 239
MluCI AATT 1 cut(s) 210
MlyI GAGTC 1 cut(s) 29
MnlI CCTC 3 cut(s) 60, 80, 211
MroXI GAANNNNTTC 1 cut(s) 63
MseI TTAA 1 cut(s) 286
MspI CCGG 1 cut(s) 118
MspR9I CCNGG 2 cut(s) 156, 224
MvaI CCWGG 2 cut(s) 156, 224
NdeII GATC 3 cut(s) 46, 73, 239
NlaIII CATG 2 cut(s) 40, 128
PagI TCATGA 1 cut(s) 36
PcsI WCGNNNNNNNCGW 1 cut(s) 73
PdmI GAANNNNTTC 1 cut(s) 63
PflFI GACNNNGTC 1 cut(s) 175
PflMI CCANNNNNTGG 1 cut(s) 136
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
Psp6I CCWGG 2 cut(s) 154, 222
PspGI CCWGG 2 cut(s) 154, 222
PspPI GGNCC 1 cut(s) 220
PsuI RGATCY 1 cut(s) 239
PsyI GACNNNGTC 1 cut(s) 175
RsaI GTAC 3 cut(s) 10, 56, 110
RsaNI GTAC 3 cut(s) 9, 55, 109
SaqAI TTAA 1 cut(s) 286
Sau3AI GATC 3 cut(s) 46, 73, 239
Sau96I GGNCC 1 cut(s) 220
SchI GAGTC 1 cut(s) 29
ScrFI CCNGG 2 cut(s) 156, 224
SetI ASST 6 cut(s) 10, 73, 102, 114, 164, 282
SinI GGWCC 1 cut(s) 220
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
SpeI ACTAGT 1 cut(s) 259
Sse9I AATT 1 cut(s) 210
SspMI CTAG 2 cut(s) 101, 260
StyD4I CCNGG 2 cut(s) 154, 222
TaqI TCGA 2 cut(s) 67, 76
TasI AATT 1 cut(s) 210
Tru1I TTAA 1 cut(s) 286
Tru9I TTAA 1 cut(s) 286
TscAI CASTG 1 cut(s) 235
TspDTI ATGAA 2 cut(s) 25, 53
TspRI CASTG 1 cut(s) 235
Tth111I GACNNNGTC 1 cut(s) 175
Van91I CCANNNNNTGG 1 cut(s) 136
VpaK11BI GGWCC 1 cut(s) 220
XmnI GAANNNNTTC 1 cut(s) 63
XspI CTAG 2 cut(s) 101, 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.