Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0015243

Physical Location & Seq

Genomic Coordinates Forward (+)

19190861 .. 19191691

Gene Structure 831 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGAGGAACCCACATTTGAGCCTGATCTAATTCACGCGATTTTCAAGATCGTCTGGTCCAGAAGAGCTATCGAGCGTCAAATGATCGAAGGCACCGATGCGTTGGATGGCGAGACCGGAGCTGGAACATCAAAGAAGAATCGCCCCACATCAGCCAATGGAAATGCCTTAAAATTGAGCTGTGAACTTCTCCGGAATTTTACCACAGAGGCTGTGCAGCGTGCTGCTACAATTGCTGAAGCGGAGGGCGTGAGTAAAATTGAACCAACTCACTTGGAGCGGGTTCTCCCACAGTTGCTTTTGGATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031297 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043240 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045005 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071821 GO:0071840 GO:0090304 GO:0097159 GO:0098813 GO:0140013 GO:1901360 GO:1901363 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

CENP-X

Protein Analysis

104

Amino Acids

11.41

Weight (kDa)

5.16

Isoelectric Point (pI)

42.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CENP-X	PF09415	46 - 103	2e-14	CENP-S associating Centromere protein X

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78790 AT1G78790 AT1G78790 AT1G78790
fragaria_vesca	FvH4_5g06690
prunus_persica	Prupe.5G161600_v2.0.a1
pyrus_communis	pycom06g14440
rosa_chinensis	RchiOBHm_Chr7g0191941
rosa_laevigata	RLG00000004416
rosa_multiflora	Rmu_ssc0000421.1_g000017
rosa_rugosa	Rorug06G0511800
rosa_samantha	Rh7AG122100 Rh7BG123700 Rh7CG126300 Rh7DG125300
rosa_wichuraiana	Rw7G010390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	92
AccBSI	CCGCTC	1 cut(s)	280
AccII	CGCG	1 cut(s)	38
AccIII	TCCGGA	1 cut(s)	192
AciI	CCGC	2 cut(s)	242, 280
AcsI	RAATTY	1 cut(s)	196
AcuI	CTGAAG	1 cut(s)	258
AgsI	TTSAA	2 cut(s)	46, 263
AluBI	AGCT	3 cut(s)	68, 122, 180
AluI	AGCT	3 cut(s)	68, 122, 180
Alw26I	GTCTC	1 cut(s)	107
AlwNI	CAGNNNCTG	1 cut(s)	212
Aor13HI	TCCGGA	1 cut(s)	192
ApeKI	GCWGC	2 cut(s)	217, 224
ApoI	RAATTY	1 cut(s)	196
AspS9I	GGNCC	1 cut(s)	57
AvaII	GGWCC	1 cut(s)	57
BanI	GGYRCC	1 cut(s)	92
BbvI	GCAGC	2 cut(s)	211, 229
BccI	CCATC	1 cut(s)	101
BcoDI	GTCTC	1 cut(s)	107
BisI	GCNGC	2 cut(s)	218, 225
BlsI	GCNGC	2 cut(s)	219, 226
Bme18I	GGWCC	1 cut(s)	57
BmgT120I	GGNCC	1 cut(s)	57
BmiI	GGNNCC	2 cut(s)	9, 94
BmsI	GCATC	1 cut(s)	88
BsaI	GGTCTC	1 cut(s)	107
BsaWI	WCCGGW	2 cut(s)	116, 192
BseAI	TCCGGA	1 cut(s)	192
BseGI	GGATG	1 cut(s)	112
BseXI	GCAGC	2 cut(s)	211, 229
BsgI	GTGCAG	1 cut(s)	236
Bsh1236I	CGCG	1 cut(s)	38
BshNI	GGYRCC	1 cut(s)	92
BsiSI	CCGG	2 cut(s)	117, 193
BsmAI	GTCTC	1 cut(s)	107
Bso31I	GGTCTC	1 cut(s)	107
Bsp13I	TCCGGA	1 cut(s)	192
Bsp143I	GATC	3 cut(s)	25, 48, 84
BspACI	CCGC	2 cut(s)	242, 280
BspEI	TCCGGA	1 cut(s)	192
BspFNI	CGCG	1 cut(s)	38
BspLI	GGNNCC	2 cut(s)	9, 94
BspQI	GCTCTTC	1 cut(s)	58
BspT107I	GGYRCC	1 cut(s)	92
BspTNI	GGTCTC	1 cut(s)	107
BsrBI	CCGCTC	1 cut(s)	280
BssMI	GATC	3 cut(s)	25, 48, 84
Bst4CI	ACNGT	1 cut(s)	294
Bst6I	CTCTTC	1 cut(s)	58
BstC8I	GCNNGC	1 cut(s)	222
BstF5I	GGATG	1 cut(s)	112
BstFNI	CGCG	1 cut(s)	38
BstKTI	GATC	3 cut(s)	28, 51, 87
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	3 cut(s)	25, 48, 84
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	2 cut(s)	211, 229
BtsCI	GGATG	1 cut(s)	112
Cac8I	GCNNGC	1 cut(s)	222
CaiI	CAGNNNCTG	1 cut(s)	212
Cfr13I	GGNCC	1 cut(s)	57
CseI	GACGC	1 cut(s)	65
CviJI	RGCY	6 cut(s)	22, 68, 122, 155, 180, 212
CviKI_1	RGCY	6 cut(s)	22, 68, 122, 155, 180, 212
DpnI	GATC	3 cut(s)	27, 50, 86
DpnII	GATC	3 cut(s)	25, 48, 84
Eam1104I	CTCTTC	1 cut(s)	58
EarI	CTCTTC	1 cut(s)	58
Eco31I	GGTCTC	1 cut(s)	107
Eco47I	GGWCC	1 cut(s)	57
Eco57I	CTGAAG	1 cut(s)	258
FauI	CCCGC	1 cut(s)	273
Fnu4HI	GCNGC	2 cut(s)	218, 225
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	2 cut(s)	218, 225
GluI	GCNGC	2 cut(s)	218, 225
HapII	CCGG	2 cut(s)	117, 193
HgaI	GACGC	1 cut(s)	65
HinfI	GANTC	1 cut(s)	139
HpaII	CCGG	2 cut(s)	117, 193
Hpy166II	GTNNAC	1 cut(s)	185
Hpy188III	TCNNGA	3 cut(s)	46, 60, 193
Hpy8I	GTNNAC	1 cut(s)	185
HpyAV	CCTTC	1 cut(s)	83
HpyCH4III	ACNGT	1 cut(s)	294
HpyCH4V	TGCA	1 cut(s)	217
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
Kpn2I	TCCGGA	1 cut(s)	192
Kzo9I	GATC	3 cut(s)	25, 48, 84
LguI	GCTCTTC	1 cut(s)	58
LmnI	GCTCC	2 cut(s)	119, 277
LpnPI	CCDG	6 cut(s)	36, 40, 73, 108, 130, 206
Lsp1109I	GCAGC	2 cut(s)	211, 229
LweI	GCATC	1 cut(s)	88
MalI	GATC	3 cut(s)	27, 50, 86
MbiI	CCGCTC	1 cut(s)	280
MboI	GATC	3 cut(s)	25, 48, 84
MboII	GAAGA	2 cut(s)	75, 148
MfeI	CAATTG	1 cut(s)	231
MluCI	AATT	5 cut(s)	30, 173, 196, 231, 258
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	2 cut(s)	202, 238
MroI	TCCGGA	1 cut(s)	192
MseI	TTAA	1 cut(s)	170
MspI	CCGG	2 cut(s)	117, 193
MunI	CAATTG	1 cut(s)	231
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	1 cut(s)	233
NdeII	GATC	3 cut(s)	25, 48, 84
NlaIV	GGNNCC	2 cut(s)	9, 94
PciSI	GCTCTTC	1 cut(s)	58
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PfeI	GAWTC	1 cut(s)	139
PkrI	GCNGC	2 cut(s)	219, 226
PspN4I	GGNNCC	2 cut(s)	9, 94
PspPI	GGNCC	1 cut(s)	57
PstNI	CAGNNNCTG	1 cut(s)	212
SapI	GCTCTTC	1 cut(s)	58
SaqAI	TTAA	1 cut(s)	170
SatI	GCNGC	2 cut(s)	218, 225
Sau3AI	GATC	3 cut(s)	25, 48, 84
Sau96I	GGNCC	1 cut(s)	57
SetI	ASST	3 cut(s)	70, 124, 182
SfaNI	GCATC	1 cut(s)	88
SinI	GGWCC	1 cut(s)	57
Sse9I	AATT	5 cut(s)	30, 173, 196, 231, 258
SsiI	CCGC	2 cut(s)	242, 280
TaaI	ACNGT	1 cut(s)	294
TaqI	TCGA	2 cut(s)	72, 87
TasI	AATT	5 cut(s)	30, 173, 196, 231, 258
TfiI	GAWTC	1 cut(s)	139
Tru1I	TTAA	1 cut(s)	170
Tru9I	TTAA	1 cut(s)	170
TseI	GCWGC	2 cut(s)	217, 224
VpaK11BI	GGWCC	1 cut(s)	57
XapI	RAATTY	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.