pycom06g14900

Belongs to the eIF-2B alpha beta delta subunits family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Reverse (-)
19516460 .. 19516768
309 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g14900.1

Sequence Viewer

Length: 309 bp
ATGATCCCCTTGCTATGTCACTCCTCCGATACCAGCCGTCCGGTTCTTTTTTATGCGGTTCCCACCTCACCGGCCTGCCGAGAGTCTGTGCTCGTCGAGAGTTACAACAACTCCTCTGAGCTCTTCCCCACCTCACCTCCTACTACGTCGTCATCGTATGGAATTATGATGGGGAATGGTGAGTTCCTGAATGATGTCCTCATGATGGGTCAAACATTCAAAAGAGTAAGAGCATTTGGGGGTTTGACAACTCCTTCTTCATTTCCTAGTGGAGGGTTTGAATCTGACGGCTACCGTGAAGGCAAGTAG

Protein Analysis

103

Amino Acids

11.03

Weight (kDa)

5.19

Isoelectric Point (pI)

62.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020435)

Species Orthologous Gene IDs
pyrus_communis pycom06g14900
rosa_laevigata RLG00000008336
rosa_samantha Rh3BG307300 Rh4DG070300 Rh5BG035600 Rh7BG342800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 56
AfiI CCNNNNNNNGG 2 cut(s) 205, 272
AgsI TTSAA 2 cut(s) 220, 281
AluBI AGCT 1 cut(s) 121
AluI AGCT 1 cut(s) 121
Alw21I GWGCWC 2 cut(s) 93, 123
AoxI GGCC 1 cut(s) 72
AsuHPI GGTGA 3 cut(s) 60, 126, 191
BanII GRGCYC 1 cut(s) 123
Bbv12I GWGCWC 2 cut(s) 93, 123
BccI CCATC 2 cut(s) 163, 199
BceAI ACGGC 2 cut(s) 21, 304
BfaI CTAG 1 cut(s) 267
BmiI GGNNCC 1 cut(s) 60
BsaWI WCCGGW 1 cut(s) 40
BsaXI ACNNNNNCTCC 4 cut(s) 95, 121, 125, 151
Bsc4I CCNNNNNNNGG 2 cut(s) 205, 272
Bse118I RCCGGY 1 cut(s) 70
BseLI CCNNNNNNNGG 2 cut(s) 205, 272
BseMII CTCAG 1 cut(s) 108
BseRI GAGGAG 2 cut(s) 13, 103
BshFI GGCC 1 cut(s) 74
BsiHKAI GWGCWC 2 cut(s) 93, 123
BsiSI CCGG 2 cut(s) 41, 71
BslI CCNNNNNNNGG 2 cut(s) 205, 272
BsnI GGCC 1 cut(s) 74
Bsp1286I GDGCHC 2 cut(s) 93, 123
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 1 cut(s) 56
BspANI GGCC 1 cut(s) 74
BspCNI CTCAG 1 cut(s) 109
BspHI TCATGA 1 cut(s) 201
BspLI GGNNCC 1 cut(s) 60
BspQI GCTCTTC 1 cut(s) 128
BsrFI RCCGGY 1 cut(s) 70
BssAI RCCGGY 1 cut(s) 70
BssMI GATC 1 cut(s) 3
Bst4CI ACNGT 1 cut(s) 296
Bst6I CTCTTC 1 cut(s) 128
BstC8I GCNNGC 1 cut(s) 76
BstDEI CTNAG 1 cut(s) 117
BstENI CCTNNNNNAGG 1 cut(s) 270
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BsuRI GGCC 1 cut(s) 74
Cac8I GCNNGC 1 cut(s) 76
CciI TCATGA 1 cut(s) 201
Cfr10I RCCGGY 1 cut(s) 70
CviAII CATG 1 cut(s) 202
CviJI RGCY 4 cut(s) 36, 74, 121, 291
CviKI_1 RGCY 4 cut(s) 36, 74, 121, 291
DdeI CTNAG 1 cut(s) 117
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
Ecl136II GAGCTC 1 cut(s) 121
Eco24I GRGCYC 1 cut(s) 123
Eco53kI GAGCTC 1 cut(s) 121
EcoICRI GAGCTC 1 cut(s) 121
EcoNI CCTNNNNNAGG 1 cut(s) 270
EcoT38I GRGCYC 1 cut(s) 123
FaeI CATG 1 cut(s) 205
FaiI YATR 5 cut(s) 16, 54, 159, 167, 203
FatI CATG 1 cut(s) 201
FriOI GRGCYC 1 cut(s) 123
FspBI CTAG 1 cut(s) 267
HaeIII GGCC 1 cut(s) 74
HapII CCGG 2 cut(s) 41, 71
Hin1II CATG 1 cut(s) 205
HinfI GANTC 2 cut(s) 83, 281
HpaII CCGG 2 cut(s) 41, 71
HphI GGTGA 3 cut(s) 60, 126, 191
Hpy188I TCNGA 3 cut(s) 28, 118, 286
Hpy188III TCNNGA 3 cut(s) 97, 187, 202
Hpy99I CGWCG 2 cut(s) 98, 151
HpyAV CCTTC 2 cut(s) 264, 293
HpyCH4III ACNGT 1 cut(s) 296
HpyCH4IV ACGT 1 cut(s) 146
HpyF3I CTNAG 1 cut(s) 117
HpySE526I ACGT 1 cut(s) 146
Hsp92II CATG 1 cut(s) 205
Kzo9I GATC 1 cut(s) 3
LguI GCTCTTC 1 cut(s) 128
LpnPI CCDG 5 cut(s) 46, 54, 84, 88, 200
MaeI CTAG 1 cut(s) 267
MaeII ACGT 1 cut(s) 146
MaeIII GTNAC 2 cut(s) 17, 101
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 2 cut(s) 115, 249
MhlI GDGCHC 2 cut(s) 93, 123
MluCI AATT 1 cut(s) 162
MlyI GAGTC 1 cut(s) 92
MnlI CCTC 7 cut(s) 34, 76, 124, 142, 147, 209, 266
MspI CCGG 2 cut(s) 41, 71
NdeII GATC 1 cut(s) 3
NlaIII CATG 1 cut(s) 205
NlaIV GGNNCC 1 cut(s) 60
NmeAIII GCCGAG 1 cut(s) 104
NmuCI GTSAC 1 cut(s) 17
PagI TCATGA 1 cut(s) 201
PciSI GCTCTTC 1 cut(s) 128
PcsI WCGNNNNNNNCGW 1 cut(s) 152
PfeI GAWTC 1 cut(s) 281
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
Psp124BI GAGCTC 1 cut(s) 123
PspN4I GGNNCC 1 cut(s) 60
SacI GAGCTC 1 cut(s) 123
SapI GCTCTTC 1 cut(s) 128
Sau3AI GATC 1 cut(s) 3
SchI GAGTC 1 cut(s) 92
SduI GDGCHC 2 cut(s) 93, 123
SetI ASST 5 cut(s) 68, 123, 134, 139, 149
Sse9I AATT 1 cut(s) 162
SsiI CCGC 1 cut(s) 56
SspMI CTAG 1 cut(s) 267
SstI GAGCTC 1 cut(s) 123
TaaI ACNGT 1 cut(s) 296
TaiI ACGT 1 cut(s) 149
TaqI TCGA 1 cut(s) 96
TasI AATT 1 cut(s) 162
TfiI GAWTC 1 cut(s) 281
TseFI GTSAC 1 cut(s) 17
Tsp45I GTSAC 1 cut(s) 17
TspDTI ATGAA 1 cut(s) 249
XagI CCTNNNNNAGG 1 cut(s) 270
XspI CTAG 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.