Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0020435

Physical Location & Seq

Genomic Coordinates Forward (+)

29094473 .. 29097655

Gene Structure 3183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008336

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGATCCAAACTAACCATGGTGCAAATTCTGCATCATCTGTGATAAATAATGGTTGCTTGCACCGGTATGATCAGACAATCCAGCTGGATGAGCAGTCCACTGAGAAACAATCCCCAGTTACTGGCACCTTCTTCGTCAGCGACCCGAAGGTCCGCCAAGTCGGGTTCTTCGCCGCCCCGGAGCCCATCGCCTCCTCCCCTCCGGTCTCTGACATTTCCCCCTCTGGCAACTCTCTCTTTCCCGTCATGATCCCCCCGCCACATCACTCCACCGATGCCGCCCTCCCATTCTCTTCTCCCCCTGCCTCCCCCGGCCGCCGCGACTCCCTCACCTCCTCCGACCTCTTCACCTGCAAATCTGCAAATCTCACACTAAAAACTAACACCACAACACCTATCCATTTCTTTTTTCTATACAATCACCGCCACTCACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001541 GO:0002253 GO:0002376 GO:0002429 GO:0002682 GO:0002684 GO:0002757 GO:0002764 GO:0002768 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007272 GO:0007275 GO:0007399 GO:0007417 GO:0007548 GO:0008150 GO:0008152 GO:0008366 GO:0008406 GO:0008585 GO:0009058 GO:0009059 GO:0009987 GO:0010001 GO:0010467 GO:0014003 GO:0019538 GO:0021782 GO:0022008 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0042063 GO:0042552 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045137 GO:0046545 GO:0046660 GO:0048468 GO:0048513 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048709 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050851 GO:0050852 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

146

Amino Acids

15.69

Weight (kDa)

6.63

Isoelectric Point (pI)

65.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020435)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g14900
rosa_laevigata	RLG00000008336
rosa_samantha	Rh3BG307300 Rh4DG070300 Rh5BG035600 Rh7BG342800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	359
AasI	GACNNNNNNGTC	1 cut(s)	149
Acc36I	ACCTGC	1 cut(s)	359
AccB1I	GGYRCC	1 cut(s)	125
AccB7I	CCANNNNNTGG	1 cut(s)	122
AccII	CGCG	1 cut(s)	321
AciI	CCGC	7 cut(s)	154, 174, 257, 279, 316, 319, 424
AclWI	GGATC	1 cut(s)	244
AcoI	YGGCCR	1 cut(s)	313
AcsI	RAATTY	1 cut(s)	25
AfiI	CCNNNNNNNGG	1 cut(s)	122
AgeI	ACCGGT	1 cut(s)	63
AluBI	AGCT	1 cut(s)	85
AluI	AGCT	1 cut(s)	85
Alw26I	GTCTC	1 cut(s)	211
AlwI	GGATC	1 cut(s)	244
AlwNI	CAGNNNCTG	1 cut(s)	122
AoxI	GGCC	1 cut(s)	313
ApoI	RAATTY	1 cut(s)	25
AsiGI	ACCGGT	1 cut(s)	63
AspS9I	GGNCC	1 cut(s)	151
AsuC2I	CCSGG	2 cut(s)	179, 312
AsuHPI	GGTGA	4 cut(s)	322, 340, 413, 423
AvaII	GGWCC	1 cut(s)	151
BanI	GGYRCC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	186
BccI	CCATC	1 cut(s)	194
BcgI	CGANNNNNNTGC	2 cut(s)	115, 149
BclI	TGATCA	1 cut(s)	70
BcnI	CCSGG	2 cut(s)	179, 312
BcoDI	GTCTC	1 cut(s)	211
BfuAI	ACCTGC	1 cut(s)	359
BisI	GCNGC	4 cut(s)	174, 279, 316, 319
BlsI	GCNGC	4 cut(s)	175, 280, 317, 320
Bme1390I	CCNGG	2 cut(s)	179, 312
Bme18I	GGWCC	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	151
BmiI	GGNNCC	2 cut(s)	127, 183
BmrFI	CCNGG	2 cut(s)	179, 312
BmrI	ACTGGG	1 cut(s)	110
BmsI	GCATC	2 cut(s)	41, 265
BmuI	ACTGGG	1 cut(s)	110
BpuMI	CCSGG	2 cut(s)	179, 312
BsaI	GGTCTC	1 cut(s)	211
BsaJI	CCNNGG	3 cut(s)	16, 177, 310
BsaWI	WCCGGW	2 cut(s)	63, 202
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
Bse118I	RCCGGY	1 cut(s)	63
Bse1I	ACTGG	2 cut(s)	116, 127
BseDI	CCNNGG	3 cut(s)	16, 177, 310
BseGI	GGATG	1 cut(s)	94
BseLI	CCNNNNNNNGG	1 cut(s)	122
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	2 cut(s)	116, 127
BseRI	GAGGAG	2 cut(s)	184, 325
BseX3I	CGGCCG	1 cut(s)	313
Bsh1236I	CGCG	1 cut(s)	321
Bsh1285I	CGRYCG	1 cut(s)	316
BshFI	GGCC	1 cut(s)	315
BshNI	GGYRCC	1 cut(s)	125
BshTI	ACCGGT	1 cut(s)	63
BsiEI	CGRYCG	1 cut(s)	316
BsiSI	CCGG	4 cut(s)	64, 179, 203, 312
BslI	CCNNNNNNNGG	1 cut(s)	122
BsmAI	GTCTC	1 cut(s)	211
BsnI	GGCC	1 cut(s)	315
Bso31I	GGTCTC	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp143I	GATC	3 cut(s)	3, 70, 249
Bsp19I	CCATGG	1 cut(s)	16
BspACI	CCGC	7 cut(s)	154, 174, 257, 279, 316, 319, 424
BspANI	GGCC	1 cut(s)	315
BspCNI	CTCAG	1 cut(s)	94
BspFNI	CGCG	1 cut(s)	321
BspHI	TCATGA	1 cut(s)	246
BspLI	GGNNCC	2 cut(s)	127, 183
BspMI	ACCTGC	1 cut(s)	359
BspPI	GGATC	1 cut(s)	244
BspT107I	GGYRCC	1 cut(s)	125
BspTNI	GGTCTC	1 cut(s)	211
BsrFI	RCCGGY	1 cut(s)	63
BsrI	ACTGG	2 cut(s)	116, 127
BssAI	RCCGGY	1 cut(s)	63
BssECI	CCNNGG	3 cut(s)	16, 177, 310
BssMI	GATC	3 cut(s)	3, 70, 249
BssT1I	CCWWGG	1 cut(s)	16
Bst6I	CTCTTC	2 cut(s)	298, 350
BstAPI	GCANNNNNTGC	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	59
BstDEI	CTNAG	1 cut(s)	102
BstDSI	CCRYGG	1 cut(s)	16
BstF5I	GGATG	1 cut(s)	94
BstFNI	CGCG	1 cut(s)	321
BstKTI	GATC	3 cut(s)	6, 73, 252
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	3 cut(s)	3, 70, 249
BstMCI	CGRYCG	1 cut(s)	316
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 91
BstSCI	CCNGG	2 cut(s)	177, 310
BstUI	CGCG	1 cut(s)	321
BstZI	CGGCCG	1 cut(s)	313
BsuRI	GGCC	1 cut(s)	315
BtgI	CCRYGG	1 cut(s)	16
BtgZI	GCGATG	1 cut(s)	172
BtsCI	GGATG	1 cut(s)	94
BtsIMutI	CAGTG	1 cut(s)	99
BveI	ACCTGC	1 cut(s)	359
Cac8I	GCNNGC	1 cut(s)	59
CaiI	CAGNNNCTG	1 cut(s)	122
CciI	TCATGA	1 cut(s)	246
Cfr10I	RCCGGY	1 cut(s)	63
Cfr13I	GGNCC	1 cut(s)	151
CspAI	ACCGGT	1 cut(s)	63
CviAII	CATG	2 cut(s)	17, 247
CviJI	RGCY	3 cut(s)	85, 184, 315
CviKI_1	RGCY	3 cut(s)	85, 184, 315
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	3 cut(s)	5, 72, 251
DpnII	GATC	3 cut(s)	3, 70, 249
DrdI	GACNNNNNNGTC	1 cut(s)	149
DseDI	GACNNNNNNGTC	1 cut(s)	149
EaeI	YGGCCR	1 cut(s)	313
EagI	CGGCCG	1 cut(s)	313
Eam1104I	CTCTTC	2 cut(s)	298, 350
EarI	CTCTTC	2 cut(s)	298, 350
EciI	GGCGGA	1 cut(s)	143
EclXI	CGGCCG	1 cut(s)	313
Eco130I	CCWWGG	1 cut(s)	16
Eco24I	GRGCYC	1 cut(s)	186
Eco31I	GGTCTC	1 cut(s)	211
Eco47I	GGWCC	1 cut(s)	151
Eco52I	CGGCCG	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	16
EcoT38I	GRGCYC	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	2 cut(s)	20, 250
FaiI	YATR	4 cut(s)	18, 69, 248, 415
FatI	CATG	2 cut(s)	16, 246
FauI	CCCGC	1 cut(s)	264
FbaI	TGATCA	1 cut(s)	70
Fnu4HI	GCNGC	4 cut(s)	174, 279, 316, 319
FokI	GGATG	1 cut(s)	101
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	4 cut(s)	174, 279, 316, 319
GluI	GCNGC	4 cut(s)	174, 279, 316, 319
HaeIII	GGCC	1 cut(s)	315
HapII	CCGG	4 cut(s)	64, 179, 203, 312
Hin1II	CATG	2 cut(s)	20, 250
HinfI	GANTC	1 cut(s)	323
HpaII	CCGG	4 cut(s)	64, 179, 203, 312
HphI	GGTGA	4 cut(s)	322, 340, 413, 423
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	3 cut(s)	75, 211, 340
Hpy188III	TCNNGA	1 cut(s)	247
Hpy8I	GTNNAC	1 cut(s)	99
HpyAV	CCTTC	2 cut(s)	139, 142
HpyCH4V	TGCA	5 cut(s)	23, 32, 61, 354, 362
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 91
HpyF3I	CTNAG	1 cut(s)	102
Hsp92II	CATG	2 cut(s)	20, 250
Ksp22I	TGATCA	1 cut(s)	70
Kzo9I	GATC	3 cut(s)	3, 70, 249
LmnI	GCTCC	1 cut(s)	181
LweI	GCATC	2 cut(s)	41, 265
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	3 cut(s)	5, 72, 251
MboI	GATC	3 cut(s)	3, 70, 249
MboII	GAAGA	4 cut(s)	124, 160, 285, 337
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	1 cut(s)	25
MlyI	GAGTC	1 cut(s)	317
MmeI	TCCRAC	1 cut(s)	363
MslI	CAYNNNNRTG	1 cut(s)	66
MspA1I	CMGCKG	1 cut(s)	85
MspI	CCGG	4 cut(s)	64, 179, 203, 312
MspR9I	CCNGG	2 cut(s)	179, 312
MvnI	CGCG	1 cut(s)	321
MwoI	GCNNNNNNNGC	2 cut(s)	29, 91
NciI	CCSGG	2 cut(s)	179, 312
NcoI	CCATGG	1 cut(s)	16
NdeII	GATC	3 cut(s)	3, 70, 249
NlaIII	CATG	2 cut(s)	20, 250
NlaIV	GGNNCC	2 cut(s)	127, 183
PagI	TCATGA	1 cut(s)	246
PaqCI	CACCTGC	1 cut(s)	359
PflMI	CCANNNNNTGG	1 cut(s)	122
PinAI	ACCGGT	1 cut(s)	63
PkrI	GCNGC	4 cut(s)	175, 280, 317, 320
PleI	GAGTC	1 cut(s)	317
PpsI	GAGTC	1 cut(s)	317
PspN4I	GGNNCC	2 cut(s)	127, 183
PspPI	GGNCC	1 cut(s)	151
PstNI	CAGNNNCTG	1 cut(s)	122
PvuII	CAGCTG	1 cut(s)	85
RseI	CAYNNNNRTG	1 cut(s)	66
SatI	GCNGC	4 cut(s)	174, 279, 316, 319
Sau3AI	GATC	3 cut(s)	3, 70, 249
Sau96I	GGNCC	1 cut(s)	151
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	2 cut(s)	179, 312
SduI	GDGCHC	1 cut(s)	186
SetI	ASST	7 cut(s)	87, 131, 153, 335, 345, 353, 397
SfaNI	GCATC	2 cut(s)	41, 265
SinI	GGWCC	1 cut(s)	151
SmiMI	CAYNNNNRTG	1 cut(s)	66
Sse9I	AATT	1 cut(s)	25
SsiI	CCGC	7 cut(s)	154, 174, 257, 279, 316, 319, 424
StyD4I	CCNGG	2 cut(s)	177, 310
StyI	CCWWGG	1 cut(s)	16
TasI	AATT	1 cut(s)	25
TauI	GCSGC	4 cut(s)	176, 281, 318, 321
TscAI	CASTG	1 cut(s)	106
TspRI	CASTG	1 cut(s)	106
Van91I	CCANNNNNTGG	1 cut(s)	122
VpaK11BI	GGWCC	1 cut(s)	151
XapI	RAATTY	1 cut(s)	25
XcmI	CCANNNNNNNNNTGG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.