Rh5BG035600

Belongs to the eIF-2B alpha beta delta subunits family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
2465658 .. 2465816
159 bp
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UTR
Exon/CDS
Intron
Rh5BG035600.1

Sequence Viewer

Length: 159 bp
ATGATCCCCCCGCCACGTCACTCCTCCGACGCCGCCCGTCCCGTTCTCTTCTCTCCCGTTCCCCCCACCTCCTCCGGCCGCCGCGACTCCCTCGCCTCCTCTGACCTCTTCCCCGCCTCCTCCCCCACAGCCTCCACTTCCTACGCCGACGCCGATTAA

Protein Analysis

52

Amino Acids

5.37

Weight (kDa)

5.49

Isoelectric Point (pI)

92.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0020435)

Species Orthologous Gene IDs
pyrus_communis pycom06g14900
rosa_laevigata RLG00000008336
rosa_samantha Rh3BG307300 Rh4DG070300 Rh5BG035600 Rh7BG342800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 84
AciI CCGC 5 cut(s) 11, 33, 79, 82, 114
AcoI YGGCCR 1 cut(s) 76
AcyI GRCGYC 2 cut(s) 30, 150
AjiI CACGTC 1 cut(s) 17
AoxI GGCC 1 cut(s) 76
BisI GCNGC 3 cut(s) 33, 79, 82
BlsI GCNGC 3 cut(s) 34, 80, 83
BmgBI CACGTC 1 cut(s) 17
BsaHI GRCGYC 2 cut(s) 30, 150
BseRI GAGGAG 4 cut(s) 13, 61, 88, 109
BseX3I CGGCCG 1 cut(s) 76
Bsh1236I CGCG 1 cut(s) 84
Bsh1285I CGRYCG 1 cut(s) 79
BshFI GGCC 1 cut(s) 78
BsiEI CGRYCG 1 cut(s) 79
BsiSI CCGG 1 cut(s) 75
BslFI GGGAC 1 cut(s) 24
BsmFI GGGAC 1 cut(s) 24
BsnI GGCC 1 cut(s) 78
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 5 cut(s) 11, 33, 79, 82, 114
BspANI GGCC 1 cut(s) 78
BspFNI CGCG 1 cut(s) 84
BssMI GATC 1 cut(s) 3
BssNI GRCGYC 2 cut(s) 30, 150
Bst6I CTCTTC 2 cut(s) 53, 113
BstACI GRCGYC 2 cut(s) 30, 150
BstFNI CGCG 1 cut(s) 84
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMCI CGRYCG 1 cut(s) 79
BstUI CGCG 1 cut(s) 84
BstZI CGGCCG 1 cut(s) 76
BsuRI GGCC 1 cut(s) 78
BtrI CACGTC 1 cut(s) 17
CseI GACGC 1 cut(s) 38
CviJI RGCY 2 cut(s) 78, 131
CviKI_1 RGCY 2 cut(s) 78, 131
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
EaeI YGGCCR 1 cut(s) 76
EagI CGGCCG 1 cut(s) 76
Eam1104I CTCTTC 2 cut(s) 53, 113
EarI CTCTTC 2 cut(s) 53, 113
EclXI CGGCCG 1 cut(s) 76
Eco52I CGGCCG 1 cut(s) 76
FaqI GGGAC 1 cut(s) 24
FauI CCCGC 2 cut(s) 18, 121
Fnu4HI GCNGC 3 cut(s) 33, 79, 82
Fsp4HI GCNGC 3 cut(s) 33, 79, 82
GluI GCNGC 3 cut(s) 33, 79, 82
HaeIII GGCC 1 cut(s) 78
HapII CCGG 1 cut(s) 75
HgaI GACGC 1 cut(s) 38
Hin1I GRCGYC 2 cut(s) 30, 150
HinfI GANTC 1 cut(s) 86
HpaII CCGG 1 cut(s) 75
Hpy188I TCNGA 2 cut(s) 28, 103
Hpy99I CGWCG 2 cut(s) 32, 152
HpyCH4IV ACGT 1 cut(s) 16
HpySE526I ACGT 1 cut(s) 16
Hsp92I GRCGYC 2 cut(s) 30, 150
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 1 cut(s) 88
MaeII ACGT 1 cut(s) 16
MaeIII GTNAC 1 cut(s) 17
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 2 cut(s) 40, 100
MlyI GAGTC 1 cut(s) 80
MmeI TCCRAC 1 cut(s) 51
MseI TTAA 1 cut(s) 157
MspI CCGG 1 cut(s) 75
MvnI CGCG 1 cut(s) 84
NdeII GATC 1 cut(s) 3
NmuCI GTSAC 1 cut(s) 17
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PkrI GCNGC 3 cut(s) 34, 80, 83
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
SaqAI TTAA 1 cut(s) 157
SatI GCNGC 3 cut(s) 33, 79, 82
Sau3AI GATC 1 cut(s) 3
SchI GAGTC 1 cut(s) 80
SetI ASST 3 cut(s) 19, 71, 108
SgeI CNNG 9 cut(s) 22, 27, 48, 53, 68, 87, 95, 104, 125
SsiI CCGC 5 cut(s) 11, 33, 79, 82, 114
TaiI ACGT 1 cut(s) 19
TauI GCSGC 3 cut(s) 35, 81, 84
Tru1I TTAA 1 cut(s) 157
Tru9I TTAA 1 cut(s) 157
TseFI GTSAC 1 cut(s) 17
Tsp45I GTSAC 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.