Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0020435

Physical Location & Seq

Genomic Coordinates Forward (+)

31027493 .. 31042235

Gene Structure 14743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG307300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGTCTGTCAGCTTCTTCGTCAGCGACCCGAAGGTCCGCCAAGTCGGGTTCTTCGCCGCCCCGGAGCCCATCGCTTCCTCCCCTCCAGTCTCCGACATTTCCCCCTCCGGCAACTCTCTCTCCCCCGTCATGATCCCCCCGCCACGTCACTCCTCCGACGCCGCCCGTCCCGTTCTCTTCTCTCCCGTTCCCCCCGCCTCCTCCAGCCGCCGCGACTCCCTCGCCTCCTCTGACCTCTTCCCCGCCTCCTCCCCCACAGCCTCCACTTCCTACGCCGACGCCGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001541 GO:0002253 GO:0002376 GO:0002429 GO:0002682 GO:0002684 GO:0002757 GO:0002764 GO:0002768 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007272 GO:0007275 GO:0007399 GO:0007417 GO:0007548 GO:0008150 GO:0008152 GO:0008366 GO:0008406 GO:0008585 GO:0009058 GO:0009059 GO:0009987 GO:0010001 GO:0010467 GO:0014003 GO:0019538 GO:0021782 GO:0022008 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0042063 GO:0042552 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045137 GO:0046545 GO:0046660 GO:0048468 GO:0048513 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048709 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050851 GO:0050852 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

95

Amino Acids

9.79

Weight (kDa)

5.03

Isoelectric Point (pI)

94.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020435)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g14900
rosa_laevigata	RLG00000008336
rosa_samantha	Rh3BG307300 Rh4DG070300 Rh5BG035600 Rh7BG342800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	32
AccII	CGCG	1 cut(s)	213
AciI	CCGC	8 cut(s)	37, 57, 140, 162, 195, 208, 211, 243
AclWI	GGATC	1 cut(s)	127
AcyI	GRCGYC	2 cut(s)	159, 279
AjiI	CACGTC	1 cut(s)	146
AluBI	AGCT	1 cut(s)	12
AluI	AGCT	1 cut(s)	12
Alw26I	GTCTC	1 cut(s)	94
AlwI	GGATC	1 cut(s)	127
AspS9I	GGNCC	1 cut(s)	34
AsuC2I	CCSGG	1 cut(s)	62
AvaII	GGWCC	1 cut(s)	34
BanII	GRGCYC	1 cut(s)	69
BccI	CCATC	1 cut(s)	77
BcnI	CCSGG	1 cut(s)	62
BcoDI	GTCTC	1 cut(s)	94
BisI	GCNGC	4 cut(s)	57, 162, 208, 211
BlsI	GCNGC	4 cut(s)	58, 163, 209, 212
Bme1390I	CCNGG	1 cut(s)	62
Bme18I	GGWCC	1 cut(s)	34
BmgBI	CACGTC	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	1 cut(s)	62
BpmI	CTGGAG	2 cut(s)	69, 187
BpuMI	CCSGG	1 cut(s)	62
BsaHI	GRCGYC	2 cut(s)	159, 279
BsaJI	CCNNGG	1 cut(s)	60
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bse1I	ACTGG	1 cut(s)	86
BseDI	CCNNGG	1 cut(s)	60
BseNI	ACTGG	1 cut(s)	86
BseRI	GAGGAG	4 cut(s)	142, 190, 217, 238
Bsh1236I	CGCG	1 cut(s)	213
BsiSI	CCGG	2 cut(s)	62, 108
BslFI	GGGAC	1 cut(s)	153
BsmAI	GTCTC	1 cut(s)	94
BsmFI	GGGAC	1 cut(s)	153
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	1 cut(s)	132
BspACI	CCGC	8 cut(s)	37, 57, 140, 162, 195, 208, 211, 243
BspFNI	CGCG	1 cut(s)	213
BspHI	TCATGA	1 cut(s)	129
BspLI	GGNNCC	1 cut(s)	66
BspPI	GGATC	1 cut(s)	127
BsrI	ACTGG	1 cut(s)	86
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	1 cut(s)	132
BssNI	GRCGYC	2 cut(s)	159, 279
Bst6I	CTCTTC	2 cut(s)	182, 242
BstACI	GRCGYC	2 cut(s)	159, 279
BstFNI	CGCG	1 cut(s)	213
BstKTI	GATC	1 cut(s)	135
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	132
BstSCI	CCNGG	1 cut(s)	60
BstUI	CGCG	1 cut(s)	213
BtgZI	GCGATG	1 cut(s)	55
BtrI	CACGTC	1 cut(s)	146
CciI	TCATGA	1 cut(s)	129
Cfr13I	GGNCC	1 cut(s)	34
CseI	GACGC	1 cut(s)	167
CviAII	CATG	1 cut(s)	130
CviJI	RGCY	4 cut(s)	12, 67, 207, 260
CviKI_1	RGCY	4 cut(s)	12, 67, 207, 260
DpnI	GATC	1 cut(s)	134
DpnII	GATC	1 cut(s)	132
DrdI	GACNNNNNNGTC	1 cut(s)	32
DseDI	GACNNNNNNGTC	1 cut(s)	32
Eam1104I	CTCTTC	2 cut(s)	182, 242
EarI	CTCTTC	2 cut(s)	182, 242
EciI	GGCGGA	1 cut(s)	26
Eco24I	GRGCYC	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	34
EcoT38I	GRGCYC	1 cut(s)	69
FaeI	CATG	1 cut(s)	133
FaiI	YATR	1 cut(s)	131
FaqI	GGGAC	1 cut(s)	153
FatI	CATG	1 cut(s)	129
FauI	CCCGC	3 cut(s)	147, 202, 250
Fnu4HI	GCNGC	4 cut(s)	57, 162, 208, 211
FriOI	GRGCYC	1 cut(s)	69
Fsp4HI	GCNGC	4 cut(s)	57, 162, 208, 211
GluI	GCNGC	4 cut(s)	57, 162, 208, 211
GsuI	CTGGAG	2 cut(s)	69, 187
HapII	CCGG	2 cut(s)	62, 108
HgaI	GACGC	1 cut(s)	167
Hin1I	GRCGYC	2 cut(s)	159, 279
Hin1II	CATG	1 cut(s)	133
HinfI	GANTC	1 cut(s)	215
HpaII	CCGG	2 cut(s)	62, 108
Hpy188I	TCNGA	3 cut(s)	94, 157, 232
Hpy188III	TCNNGA	1 cut(s)	130
Hpy99I	CGWCG	2 cut(s)	161, 281
HpyAV	CCTTC	1 cut(s)	25
HpyCH4IV	ACGT	1 cut(s)	145
HpySE526I	ACGT	1 cut(s)	145
Hsp92I	GRCGYC	2 cut(s)	159, 279
Hsp92II	CATG	1 cut(s)	133
Kzo9I	GATC	1 cut(s)	132
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	4 cut(s)	75, 99, 121, 217
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	1 cut(s)	146
MalI	GATC	1 cut(s)	134
MboI	GATC	1 cut(s)	132
MboII	GAAGA	4 cut(s)	7, 43, 169, 229
MhlI	GDGCHC	1 cut(s)	69
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	2 cut(s)	117, 180
MspI	CCGG	2 cut(s)	62, 108
MspR9I	CCNGG	1 cut(s)	62
MvnI	CGCG	1 cut(s)	213
NciI	CCSGG	1 cut(s)	62
NdeII	GATC	1 cut(s)	132
NlaIII	CATG	1 cut(s)	133
NlaIV	GGNNCC	1 cut(s)	66
NmuCI	GTSAC	1 cut(s)	146
PagI	TCATGA	1 cut(s)	129
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PkrI	GCNGC	4 cut(s)	58, 163, 209, 212
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
PspN4I	GGNNCC	1 cut(s)	66
PspPI	GGNCC	1 cut(s)	34
SatI	GCNGC	4 cut(s)	57, 162, 208, 211
Sau3AI	GATC	1 cut(s)	132
Sau96I	GGNCC	1 cut(s)	34
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	62
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	4 cut(s)	14, 36, 148, 237
SinI	GGWCC	1 cut(s)	34
SsiI	CCGC	8 cut(s)	37, 57, 140, 162, 195, 208, 211, 243
StyD4I	CCNGG	1 cut(s)	60
TaiI	ACGT	1 cut(s)	148
TauI	GCSGC	4 cut(s)	59, 164, 210, 213
TseFI	GTSAC	1 cut(s)	146
Tsp45I	GTSAC	1 cut(s)	146
VpaK11BI	GGWCC	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.