pycom06g20850

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0021121
Physical Location & Seq
Forward (+)
23752721 .. 23753212
492 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g20850.2

Sequence Viewer

Length: 312 bp
ATGGGTTCTCACAACAGCCGGACCCCGACCCACCACACGAATCCCACCTCCGATTCCGACCCGGAAATCGGCGGAGCCCTACCCCTCTCCGAATTCTCCTTTGCCGACCTCAAAGCCGCCACCAACAACTTCAGCTCTGACTACATAGTTTCGGAGAGCGTCGAGAAGGCCCCTAATCTTGTTTACAAGGGCCGGCTGCAGAACCGCCGTTGGATCGCCGTCAAGAAGTTCACCAAGATGGCGTGGATTGATCCCAAGCAGTTTGCGCTTGGGGCGTGGGGAAGCTGCGGCATCGGCGGCTTGCGAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

104

Amino Acids

11.29

Weight (kDa)

9.25

Isoelectric Point (pI)

45.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021121)

Species Orthologous Gene IDs
malus_domestica MD06G1233900.v1.1 MD10G1128800.v1.1
pyrus_communis pycom06g20850
rosa_multiflora Rmu_co8288077.1_g000001 Rmu_sc0007137.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 72, 117, 205, 288, 297
AclWI GGATC 2 cut(s) 221, 245
AcsI RAATTY 2 cut(s) 92, 306
AcuI CTGAAG 1 cut(s) 115
AfiI CCNNNNNNNGG 1 cut(s) 68
AluBI AGCT 2 cut(s) 135, 285
AluI AGCT 2 cut(s) 135, 285
AlwI GGATC 2 cut(s) 221, 245
AoxI GGCC 2 cut(s) 168, 190
ApeKI GCWGC 2 cut(s) 196, 285
ApoI RAATTY 2 cut(s) 92, 306
AspLEI GCGC 1 cut(s) 268
AspS9I GGNCC 3 cut(s) 21, 169, 190
AsuC2I CCSGG 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 223
AvaII GGWCC 1 cut(s) 21
BanII GRGCYC 1 cut(s) 79
BbvI GCAGC 2 cut(s) 183, 272
BccI CCATC 1 cut(s) 232
BceAI ACGGC 2 cut(s) 192, 203
BcnI CCSGG 1 cut(s) 62
BfmI CTRYAG 1 cut(s) 197
BisI GCNGC 5 cut(s) 117, 197, 286, 289, 298
BlsI GCNGC 5 cut(s) 118, 198, 287, 290, 299
Bme1390I CCNGG 1 cut(s) 62
Bme18I GGWCC 1 cut(s) 21
BmgT120I GGNCC 3 cut(s) 21, 169, 190
BmiI GGNNCC 3 cut(s) 23, 76, 171
BmrFI CCNGG 1 cut(s) 62
BmsI GCATC 1 cut(s) 300
BpuMI CCSGG 1 cut(s) 62
Bsc4I CCNNNNNNNGG 1 cut(s) 68
Bse118I RCCGGY 1 cut(s) 192
BseLI CCNNNNNNNGG 1 cut(s) 68
BseXI GCAGC 2 cut(s) 183, 272
BshFI GGCC 2 cut(s) 170, 192
BsiSI CCGG 3 cut(s) 19, 62, 193
BslI CCNNNNNNNGG 1 cut(s) 68
BsnI GGCC 2 cut(s) 170, 192
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 2 cut(s) 213, 250
BspACI CCGC 5 cut(s) 72, 117, 205, 288, 297
BspANI GGCC 2 cut(s) 170, 192
BspLI GGNNCC 3 cut(s) 23, 76, 171
BspMAI CTGCAG 1 cut(s) 201
BspPI GGATC 2 cut(s) 221, 245
BsrFI RCCGGY 1 cut(s) 192
BssAI RCCGGY 1 cut(s) 192
BssMI GATC 2 cut(s) 213, 250
BstC8I GCNNGC 2 cut(s) 194, 302
BstHHI GCGC 1 cut(s) 268
BstKTI GATC 2 cut(s) 216, 253
BstMBI GATC 2 cut(s) 213, 250
BstMWI GCNNNNNNNGC 4 cut(s) 265, 272, 294, 297
BstSCI CCNGG 1 cut(s) 60
BstSFI CTRYAG 1 cut(s) 197
BstV1I GCAGC 2 cut(s) 183, 272
BsuRI GGCC 2 cut(s) 170, 192
Cac8I GCNNGC 2 cut(s) 194, 302
CfoI GCGC 1 cut(s) 268
Cfr10I RCCGGY 1 cut(s) 192
Cfr13I GGNCC 3 cut(s) 21, 169, 190
CseI GACGC 1 cut(s) 148
CviJI RGCY 9 cut(s) 18, 77, 116, 135, 170, 192, 196, 285, 300
CviKI_1 RGCY 9 cut(s) 18, 77, 116, 135, 170, 192, 196, 285, 300
DpnI GATC 2 cut(s) 215, 252
DpnII GATC 2 cut(s) 213, 250
EciI GGCGGA 1 cut(s) 87
Eco24I GRGCYC 1 cut(s) 79
Eco47I GGWCC 1 cut(s) 21
Eco57I CTGAAG 1 cut(s) 115
EcoO109I RGGNCCY 1 cut(s) 169
EcoRI GAATTC 1 cut(s) 92
EcoT38I GRGCYC 1 cut(s) 79
FaiI YATR 1 cut(s) 146
Fnu4HI GCNGC 5 cut(s) 117, 197, 286, 289, 298
FriOI GRGCYC 1 cut(s) 79
Fsp4HI GCNGC 5 cut(s) 117, 197, 286, 289, 298
GlaI GCGC 1 cut(s) 267
GluI GCNGC 5 cut(s) 117, 197, 286, 289, 298
HaeIII GGCC 2 cut(s) 170, 192
HapII CCGG 3 cut(s) 19, 62, 193
HgaI GACGC 1 cut(s) 148
HhaI GCGC 1 cut(s) 268
Hin6I GCGC 1 cut(s) 266
HinP1I GCGC 1 cut(s) 266
HinfI GANTC 2 cut(s) 40, 53
HpaII CCGG 3 cut(s) 19, 62, 193
HphI GGTGA 1 cut(s) 223
Hpy166II GTNNAC 2 cut(s) 184, 231
Hpy188I TCNGA 5 cut(s) 52, 58, 91, 139, 154
Hpy188III TCNNGA 2 cut(s) 163, 223
Hpy8I GTNNAC 2 cut(s) 184, 231
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 1 cut(s) 160
HpyCH4V TGCA 1 cut(s) 199
HpyF10VI GCNNNNNNNGC 4 cut(s) 265, 272, 294, 297
HspAI GCGC 1 cut(s) 266
KroI GCCGGC 1 cut(s) 192
KroNI GCCGGC 1 cut(s) 194
Kzo9I GATC 2 cut(s) 213, 250
LmnI GCTCC 1 cut(s) 74
LpnPI CCDG 3 cut(s) 32, 75, 206
Lsp1109I GCAGC 2 cut(s) 183, 272
LweI GCATC 1 cut(s) 300
MalI GATC 2 cut(s) 215, 252
MboI GATC 2 cut(s) 213, 250
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 2 cut(s) 92, 306
MmeI TCCRAC 2 cut(s) 81, 191
MnlI CCTC 3 cut(s) 58, 95, 119
MroNI GCCGGC 1 cut(s) 192
MslI CAYNNNNRTG 1 cut(s) 236
MspI CCGG 3 cut(s) 19, 62, 193
MspR9I CCNGG 1 cut(s) 62
MwoI GCNNNNNNNGC 4 cut(s) 265, 272, 294, 297
NaeI GCCGGC 1 cut(s) 194
NciI CCSGG 1 cut(s) 62
NdeII GATC 2 cut(s) 213, 250
NgoMIV GCCGGC 1 cut(s) 192
NlaIV GGNNCC 3 cut(s) 23, 76, 171
PdiI GCCGGC 1 cut(s) 194
PfeI GAWTC 2 cut(s) 40, 53
PkrI GCNGC 5 cut(s) 118, 198, 287, 290, 299
PspN4I GGNNCC 3 cut(s) 23, 76, 171
PspPI GGNCC 3 cut(s) 21, 169, 190
PstI CTGCAG 1 cut(s) 201
RseI CAYNNNNRTG 1 cut(s) 236
SatI GCNGC 5 cut(s) 117, 197, 286, 289, 298
Sau3AI GATC 2 cut(s) 213, 250
Sau96I GGNCC 3 cut(s) 21, 169, 190
ScrFI CCNGG 1 cut(s) 62
SduI GDGCHC 1 cut(s) 79
SetI ASST 4 cut(s) 50, 111, 137, 287
SfaNI GCATC 1 cut(s) 300
SfcI CTRYAG 1 cut(s) 197
SinI GGWCC 1 cut(s) 21
SmiMI CAYNNNNRTG 1 cut(s) 236
Sse9I AATT 2 cut(s) 92, 306
SsiI CCGC 5 cut(s) 72, 117, 205, 288, 297
StyD4I CCNGG 1 cut(s) 60
TaqI TCGA 1 cut(s) 162
TasI AATT 2 cut(s) 92, 306
TauI GCSGC 3 cut(s) 119, 291, 300
TfiI GAWTC 2 cut(s) 40, 53
TseI GCWGC 2 cut(s) 196, 285
VpaK11BI GGWCC 1 cut(s) 21
XapI RAATTY 2 cut(s) 92, 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.