Rmu_co8288077.1_g000001

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8288077.1
OG0021121
Physical Location & Seq
Reverse (-)
1 .. 673
673 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8288077.1_g000001.1.cds

Sequence Viewer

Length: 469 bp
atgggttgctgtgattccaagttccttaccgccgagactcacccagagaaagtctcaacccaccaacaagcccacaacgccgcccgggcccagacccagcacccgactgtccccgccggatccgaccccgaaaccggcggcgccccgccgttctcggaattctccttcaacgacctcaaaaccgccaccaacaacttcagctccgactacatagtatccgagagtggcgagaaagcccccaacgttgtctacaagggccgcctcaacaaccgccgttggatcgccgtcaagaagttcaccaagctggcgtggcccgatcccaagcagtttgcggaggaagcttggggtgtggggaagctgaggcataggaggcttgcaaatctaattgggtattgctgtgatggtgatgagaggctgcttgttgctgagtacatgcctactgatactttagccaagcatttgtttcact
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

156

Amino Acids

17.42

Weight (kDa)

7.73

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021121)

Species Orthologous Gene IDs
malus_domestica MD06G1233900.v1.1 MD10G1128800.v1.1
pyrus_communis pycom06g20850
rosa_multiflora Rmu_co8288077.1_g000001 Rmu_sc0007137.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 140
AccI GTMKAC 1 cut(s) 249
AciI CCGC 9 cut(s) 30, 81, 114, 138, 146, 183, 259, 271, 332
AclI AACGTT 1 cut(s) 243
AclWI GGATC 4 cut(s) 114, 127, 287, 311
AcsI RAATTY 1 cut(s) 158
AcuI CTGAAG 1 cut(s) 181
AcyI GRCGYC 1 cut(s) 141
AfaI GTAC 1 cut(s) 431
AfiI CCNNNNNNNGG 1 cut(s) 134
AgsI TTSAA 1 cut(s) 169
AluBI AGCT 4 cut(s) 201, 304, 341, 358
AluI AGCT 4 cut(s) 201, 304, 341, 358
Alw26I GTCTC 2 cut(s) 29, 58
AlwI GGATC 4 cut(s) 114, 127, 287, 311
Ama87I CYCGRG 1 cut(s) 84
AoxI GGCC 3 cut(s) 87, 256, 311
ApaI GGGCCC 1 cut(s) 91
ApeKI GCWGC 1 cut(s) 415
ApoI RAATTY 1 cut(s) 158
AspLEI GCGC 1 cut(s) 143
AspS9I GGNCC 4 cut(s) 87, 88, 256, 312
AsuC2I CCSGG 2 cut(s) 85, 86
AsuHPI GGTGA 3 cut(s) 32, 289, 416
AvaI CYCGRG 1 cut(s) 84
BaeGI GKGCMC 1 cut(s) 91
BamHI GGATCC 1 cut(s) 119
BanI GGYRCC 1 cut(s) 140
BanII GRGCYC 1 cut(s) 91
BbvCI CCTCAGC 1 cut(s) 359
BbvI GCAGC 1 cut(s) 402
BccI CCATC 1 cut(s) 395
BceAI ACGGC 3 cut(s) 133, 258, 269
BciVI GTATCC 1 cut(s) 226
BcnI CCSGG 2 cut(s) 85, 86
BcoDI GTCTC 2 cut(s) 29, 58
BfoI RGCGCY 1 cut(s) 144
BfuI GTATCC 1 cut(s) 226
BglI GCCNNNNNGGC 1 cut(s) 86
BisI GCNGC 4 cut(s) 81, 139, 259, 416
BlsI GCNGC 4 cut(s) 82, 140, 260, 417
Bme1390I CCNGG 2 cut(s) 85, 86
BmeT110I CYCGRG 1 cut(s) 84
BmgT120I GGNCC 4 cut(s) 87, 88, 256, 312
BmiI GGNNCC 3 cut(s) 89, 121, 142
BmrFI CCNGG 2 cut(s) 85, 86
BplI GAGNNNNNCTC 2 cut(s) 38, 70
Bpu10I CCTNAGC 1 cut(s) 359
BpuMI CCSGG 2 cut(s) 85, 86
BsaHI GRCGYC 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 84
BsaXI ACNNNNNCTCC 2 cut(s) 185, 215
Bsc4I CCNNNNNNNGG 1 cut(s) 134
Bse118I RCCGGY 1 cut(s) 134
BseDI CCNNGG 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 134
BseMII CTCAG 2 cut(s) 350, 417
BseSI GKGCMC 1 cut(s) 91
BseXI GCAGC 1 cut(s) 402
BseYI CCCAGC 1 cut(s) 96
BshFI GGCC 3 cut(s) 89, 258, 313
BshNI GGYRCC 1 cut(s) 140
BsiHKCI CYCGRG 1 cut(s) 84
BsiSI CCGG 3 cut(s) 85, 117, 135
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 1 cut(s) 134
BsmAI GTCTC 2 cut(s) 29, 58
BsmFI GGGAC 1 cut(s) 95
BsnI GGCC 3 cut(s) 89, 258, 313
BsoBI CYCGRG 1 cut(s) 84
Bsp120I GGGCCC 1 cut(s) 87
Bsp1286I GDGCHC 1 cut(s) 91
Bsp143I GATC 3 cut(s) 119, 279, 316
BspACI CCGC 9 cut(s) 30, 81, 114, 138, 146, 183, 259, 271, 332
BspANI GGCC 3 cut(s) 89, 258, 313
BspCNI CTCAG 2 cut(s) 351, 418
BspLI GGNNCC 3 cut(s) 89, 121, 142
BspPI GGATC 4 cut(s) 114, 127, 287, 311
BspT107I GGYRCC 1 cut(s) 140
BsrFI RCCGGY 1 cut(s) 134
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 3 cut(s) 119, 279, 316
BssNI GRCGYC 1 cut(s) 141
Bst4CI ACNGT 1 cut(s) 109
BstACI GRCGYC 1 cut(s) 141
BstC8I GCNNGC 2 cut(s) 306, 375
BstDEI CTNAG 2 cut(s) 359, 426
BstH2I RGCGCY 1 cut(s) 144
BstHHI GCGC 1 cut(s) 143
BstKTI GATC 3 cut(s) 122, 282, 319
BstMAI GTCTC 2 cut(s) 29, 58
BstMBI GATC 3 cut(s) 119, 279, 316
BstMWI GCNNNNNNNGC 5 cut(s) 77, 86, 310, 338, 370
BstNSI RCATGY 1 cut(s) 436
BstSCI CCNGG 2 cut(s) 83, 84
BstSLI GKGCMC 1 cut(s) 91
BstV1I GCAGC 1 cut(s) 402
BstX2I RGATCY 1 cut(s) 119
BstYI RGATCY 1 cut(s) 119
BsuI GTATCC 1 cut(s) 226
BsuRI GGCC 3 cut(s) 89, 258, 313
Cac8I GCNNGC 2 cut(s) 306, 375
CfoI GCGC 1 cut(s) 143
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 4 cut(s) 87, 88, 256, 312
Cfr9I CCCGGG 1 cut(s) 84
Csp6I GTAC 1 cut(s) 430
CviAII CATG 1 cut(s) 433
CviQI GTAC 1 cut(s) 430
DdeI CTNAG 2 cut(s) 359, 426
DinI GGCGCC 1 cut(s) 142
DpnI GATC 3 cut(s) 121, 281, 318
DpnII GATC 3 cut(s) 119, 279, 316
Eco24I GRGCYC 1 cut(s) 91
Eco57I CTGAAG 1 cut(s) 181
Eco88I CYCGRG 1 cut(s) 84
EcoRI GAATTC 1 cut(s) 158
EcoT38I GRGCYC 1 cut(s) 91
EgeI GGCGCC 1 cut(s) 142
EheI GGCGCC 1 cut(s) 142
FaeI CATG 1 cut(s) 436
FaiI YATR 3 cut(s) 212, 366, 434
FaqI GGGAC 1 cut(s) 95
FatI CATG 1 cut(s) 432
FauI CCCGC 2 cut(s) 121, 153
FblI GTMKAC 1 cut(s) 249
Fnu4HI GCNGC 4 cut(s) 81, 139, 259, 416
FriOI GRGCYC 1 cut(s) 91
Fsp4HI GCNGC 4 cut(s) 81, 139, 259, 416
GlaI GCGC 1 cut(s) 142
GluI GCNGC 4 cut(s) 81, 139, 259, 416
GsaI CCCAGC 1 cut(s) 100
HaeII RGCGCY 1 cut(s) 144
HaeIII GGCC 3 cut(s) 89, 258, 313
HapII CCGG 3 cut(s) 85, 117, 135
HhaI GCGC 1 cut(s) 143
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 1 cut(s) 436
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HindIII AAGCTT 1 cut(s) 339
HinfI GANTC 2 cut(s) 14, 37
HpaII CCGG 3 cut(s) 85, 117, 135
HphI GGTGA 3 cut(s) 32, 289, 416
Hpy166II GTNNAC 2 cut(s) 250, 297
Hpy188I TCNGA 4 cut(s) 124, 157, 205, 220
Hpy188III TCNNGA 1 cut(s) 289
Hpy8I GTNNAC 2 cut(s) 250, 297
HpyAV CCTTC 1 cut(s) 175
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 1 cut(s) 377
HpyF10VI GCNNNNNNNGC 5 cut(s) 77, 86, 310, 338, 370
HpyF3I CTNAG 2 cut(s) 359, 426
HpySE526I ACGT 1 cut(s) 243
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 1 cut(s) 436
HspAI GCGC 1 cut(s) 141
KasI GGCGCC 1 cut(s) 140
Kzo9I GATC 3 cut(s) 119, 279, 316
LmnI GCTCC 1 cut(s) 206
LpnPI CCDG 7 cut(s) 57, 98, 104, 110, 130, 148, 290
Lsp1109I GCAGC 1 cut(s) 402
MaeII ACGT 1 cut(s) 243
MalI GATC 3 cut(s) 121, 281, 318
MboI GATC 3 cut(s) 119, 279, 316
MflI RGATCY 1 cut(s) 119
MhlI GDGCHC 1 cut(s) 91
MluCI AATT 2 cut(s) 158, 384
Mly113I GGCGCC 1 cut(s) 141
MlyI GAGTC 1 cut(s) 31
MmeI TCCRAC 3 cut(s) 147, 228, 257
MnlI CCTC 6 cut(s) 185, 272, 328, 354, 363, 405
MspI CCGG 3 cut(s) 85, 117, 135
MspR9I CCNGG 2 cut(s) 85, 86
MwoI GCNNNNNNNGC 5 cut(s) 77, 86, 310, 338, 370
NarI GGCGCC 1 cut(s) 141
NciI CCSGG 2 cut(s) 85, 86
NdeII GATC 3 cut(s) 119, 279, 316
NlaIII CATG 1 cut(s) 436
NlaIV GGNNCC 3 cut(s) 89, 121, 142
NmeAIII GCCGAG 1 cut(s) 58
NspI RCATGY 1 cut(s) 436
PfeI GAWTC 1 cut(s) 14
PkrI GCNGC 4 cut(s) 82, 140, 260, 417
PleI GAGTC 1 cut(s) 31
PluTI GGCGCC 1 cut(s) 144
PpsI GAGTC 1 cut(s) 31
Psp1406I AACGTT 1 cut(s) 243
PspFI CCCAGC 1 cut(s) 96
PspN4I GGNNCC 3 cut(s) 89, 121, 142
PspOMI GGGCCC 1 cut(s) 87
PspPI GGNCC 4 cut(s) 87, 88, 256, 312
PsuI RGATCY 1 cut(s) 119
RsaI GTAC 1 cut(s) 431
RsaNI GTAC 1 cut(s) 430
SatI GCNGC 4 cut(s) 81, 139, 259, 416
Sau3AI GATC 3 cut(s) 119, 279, 316
Sau96I GGNCC 4 cut(s) 87, 88, 256, 312
SchI GAGTC 1 cut(s) 31
ScrFI CCNGG 2 cut(s) 85, 86
SduI GDGCHC 1 cut(s) 91
SetI ASST 6 cut(s) 177, 203, 246, 306, 343, 360
SfoI GGCGCC 1 cut(s) 142
SmaI CCCGGG 1 cut(s) 86
SrfI GCCCGGGC 1 cut(s) 86
Sse9I AATT 2 cut(s) 158, 384
SsiI CCGC 9 cut(s) 30, 81, 114, 138, 146, 183, 259, 271, 332
SspDI GGCGCC 1 cut(s) 140
StyD4I CCNGG 2 cut(s) 83, 84
TaaI ACNGT 1 cut(s) 109
TaiI ACGT 1 cut(s) 246
TasI AATT 2 cut(s) 158, 384
TatI WGTACW 1 cut(s) 429
TauI GCSGC 3 cut(s) 83, 141, 261
TfiI GAWTC 1 cut(s) 14
TseI GCWGC 1 cut(s) 415
TspMI CCCGGG 1 cut(s) 84
XapI RAATTY 1 cut(s) 158
XceI RCATGY 1 cut(s) 436
XmaI CCCGGG 1 cut(s) 84
XmiI GTMKAC 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.