pycom07g00300

Zeaxanthin epoxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0017386
Physical Location & Seq
Reverse (-)
298416 .. 300218
1803 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 981 bp
ATGGAGCTTCTGGATATCTTAGTCAATGCAGTTGGAAATGACATTCTGAGAAACAAATCGAAAGTGGTGGACTTCATTCAAGACCCTAACAAGGTTGAGTGGCATTCGATTCAACTAATCCTAACATATTGGTGCATTGGTCTTTGCTGCCTTAATGCTTTTGTTACAGTGATCCTTGAAGATGGACAACGATATGATGGTGATGTTTTAGTAGGAGCCGATGGAATCTGGTCAAAGGTTCGCTCGAAATTGTTTGGCATACGGGAAGCAAAATACTCAAATTACACCTGCTACAGTGGACTCACTAAAGTTGTCCCATCATATGTTAATAGTGTTGGGTATCGGATCTTCTTGGGAACGAACCAGTACTTTGGTGCAGTAGAAGTTGGGCATGGGAATATGCAATGGTTGGCCTTCCATAAGCAGCCACCAATGAGCACTGATCCTCCTGAAGGTAAAAAGAAGAGGCTCCTGGAGGTATTTGGAAAATGGTGTCAGGAAGTGGTTGCTCTAATTCAAGAAACACCTGAGTCCATGATTTTACAAAGAGATATCTACGATAGAGACATGATATATTCCTGGGGAACCGGGCGTGTTGCTCTGCTAGGTGATGCTGCTCATCCATTGCAGCCAAATCTTGGAATAGGAGGATGCATGGCAATTGAGGACAGTTACCAGCTTATAGATGAGGTTGATCAAGTTTCCAGTACTGGCTCCAATGCTCAGAGGACAGATGCAATTGTCTTGGCCCTGAGAAGATATGCAACAAAAAGAATGAGGCGTGTTGGTATAGTGCATGCAGCCACCCGAATGGCACCGGAAATGCTTGCTATGTACCGACCTTGCATAGAGTTCAAATTTGGTCCCCTGGCTCATCTATCAACTCTGAAGATAATGCACCCTGCATTTCCGATGGCTCGTGCATTTCTGCAATTTTGTATGCCAGAATTTATGACTTGGATAATAACAGGGCATGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

327

Amino Acids

36.75

Weight (kDa)

7.59

Isoelectric Point (pI)

37.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 64 - 234 4e-08 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 296
Acc36I ACCTGC 1 cut(s) 296
AccB1I GGYRCC 1 cut(s) 814
AccB7I CCANNNNNTGG 1 cut(s) 638
AclWI GGATC 3 cut(s) 166, 353, 437
AcsI RAATTY 2 cut(s) 857, 947
AcuI CTGAAG 2 cut(s) 471, 908
AfaI GTAC 3 cut(s) 368, 709, 836
AfiI CCNNNNNNNGG 3 cut(s) 91, 452, 638
AgsI TTSAA 5 cut(s) 80, 113, 179, 518, 856
AjnI CCWGG 3 cut(s) 471, 578, 867
AluBI AGCT 2 cut(s) 7, 679
AluI AGCT 2 cut(s) 7, 679
Alw21I GWGCWC 1 cut(s) 440
Alw26I GTCTC 1 cut(s) 558
AlwI GGATC 3 cut(s) 166, 353, 437
AoxI GGCC 2 cut(s) 411, 747
ApeKI GCWGC 5 cut(s) 147, 424, 614, 628, 800
ApoI RAATTY 2 cut(s) 857, 947
AspS9I GGNCC 2 cut(s) 748, 863
AsuC2I CCSGG 1 cut(s) 589
AsuHPI GGTGA 2 cut(s) 212, 620
AvaII GGWCC 1 cut(s) 863
BanI GGYRCC 1 cut(s) 814
BarI GAAGNNNNNNTAC 2 cut(s) 332, 364
BauI CACGAG 1 cut(s) 918
Bbv12I GWGCWC 1 cut(s) 440
BbvI GCAGC 5 cut(s) 134, 436, 601, 640, 812
BccI CCATC 5 cut(s) 176, 191, 215, 325, 907
BciT130I CCWGG 3 cut(s) 473, 580, 869
BclI TGATCA 1 cut(s) 694
BcnI CCSGG 1 cut(s) 589
BcoDI GTCTC 1 cut(s) 558
BfaI CTAG 1 cut(s) 605
BfmI CTRYAG 1 cut(s) 292
BfuAI ACCTGC 1 cut(s) 296
BisI GCNGC 5 cut(s) 148, 425, 615, 629, 801
BlsI GCNGC 5 cut(s) 149, 426, 616, 630, 802
BmcAI AGTACT 2 cut(s) 368, 709
Bme1390I CCNGG 4 cut(s) 473, 580, 589, 869
Bme18I GGWCC 1 cut(s) 863
BmgT120I GGNCC 2 cut(s) 748, 863
BmiI GGNNCC 6 cut(s) 217, 470, 586, 715, 816, 865
BmrFI CCNGG 4 cut(s) 473, 580, 589, 869
BmsI GCATC 3 cut(s) 601, 641, 724
BpmI CTGGAG 1 cut(s) 494
BpuMI CCSGG 1 cut(s) 589
BsaJI CCNNGG 2 cut(s) 579, 867
BsaWI WCCGGW 1 cut(s) 817
BsaXI ACNNNNNCTCC 2 cut(s) 430, 460
Bsc4I CCNNNNNNNGG 3 cut(s) 91, 452, 638
Bse1I ACTGG 3 cut(s) 364, 705, 715
Bse3DI GCAATG 2 cut(s) 410, 623
BseBI CCWGG 3 cut(s) 473, 580, 869
BseDI CCNNGG 2 cut(s) 579, 867
BseGI GGATG 2 cut(s) 619, 656
BseLI CCNNNNNNNGG 3 cut(s) 91, 452, 638
BseMI GCAATG 2 cut(s) 410, 623
BseMII CTCAG 4 cut(s) 38, 519, 737, 743
BseNI ACTGG 3 cut(s) 364, 705, 715
BseXI GCAGC 5 cut(s) 134, 436, 601, 640, 812
BsgI GTGCAG 1 cut(s) 396
BshFI GGCC 2 cut(s) 413, 749
BshNI GGYRCC 1 cut(s) 814
BsiHKAI GWGCWC 1 cut(s) 440
BsiSI CCGG 2 cut(s) 588, 818
BslFI GGGAC 2 cut(s) 299, 849
BslI CCNNNNNNNGG 3 cut(s) 91, 452, 638
BsmAI GTCTC 1 cut(s) 558
BsmFI GGGAC 2 cut(s) 299, 849
BsmI GAATGC 1 cut(s) 103
BsnI GGCC 2 cut(s) 413, 749
Bsp1286I GDGCHC 1 cut(s) 440
Bsp143I GATC 4 cut(s) 171, 345, 442, 694
BspANI GGCC 2 cut(s) 413, 749
BspCNI CTCAG 4 cut(s) 39, 520, 736, 744
BspLI GGNNCC 6 cut(s) 217, 470, 586, 715, 816, 865
BspMI ACCTGC 1 cut(s) 296
BspPI GGATC 3 cut(s) 166, 353, 437
BspT107I GGYRCC 1 cut(s) 814
BsrDI GCAATG 2 cut(s) 410, 623
BsrI ACTGG 3 cut(s) 364, 705, 715
BssECI CCNNGG 2 cut(s) 579, 867
BssMI GATC 4 cut(s) 171, 345, 442, 694
BssSI CACGAG 1 cut(s) 918
Bst2BI CACGAG 1 cut(s) 918
Bst2UI CCWGG 3 cut(s) 473, 580, 869
Bst4CI ACNGT 3 cut(s) 169, 296, 671
Bst6I CTCTTC 1 cut(s) 458
BstC8I GCNNGC 2 cut(s) 798, 828
BstDEI CTNAG 5 cut(s) 19, 47, 528, 723, 752
BstENI CCTNNNNNAGG 1 cut(s) 450
BstF5I GGATG 2 cut(s) 619, 656
BstKTI GATC 4 cut(s) 174, 348, 445, 697
BstMAI GTCTC 1 cut(s) 558
BstMBI GATC 4 cut(s) 171, 345, 442, 694
BstNI CCWGG 3 cut(s) 473, 580, 869
BstNSI RCATGY 1 cut(s) 800
BstSCI CCNGG 4 cut(s) 471, 578, 587, 867
BstSFI CTRYAG 1 cut(s) 292
BstV1I GCAGC 5 cut(s) 134, 436, 601, 640, 812
BstX2I RGATCY 1 cut(s) 345
BstXI CCANNNNNNTGG 2 cut(s) 371, 811
BstYI RGATCY 1 cut(s) 345
BsuRI GGCC 2 cut(s) 413, 749
BtsCI GGATG 2 cut(s) 619, 656
BtsIMutI CAGTG 3 cut(s) 174, 301, 438
BveI ACCTGC 1 cut(s) 296
Cac8I GCNNGC 2 cut(s) 798, 828
Cfr13I GGNCC 2 cut(s) 748, 863
Csp6I GTAC 3 cut(s) 367, 708, 835
CviAII CATG 6 cut(s) 392, 535, 568, 655, 797, 974
CviQI GTAC 3 cut(s) 367, 708, 835
DdeI CTNAG 5 cut(s) 19, 47, 528, 723, 752
DpnI GATC 4 cut(s) 173, 347, 444, 696
DpnII GATC 4 cut(s) 171, 345, 442, 694
Eam1104I CTCTTC 1 cut(s) 458
EarI CTCTTC 1 cut(s) 458
Eco32I GATATC 2 cut(s) 16, 553
Eco47I GGWCC 1 cut(s) 863
Eco57I CTGAAG 2 cut(s) 471, 908
EcoNI CCTNNNNNAGG 1 cut(s) 450
EcoRII CCWGG 3 cut(s) 471, 578, 867
EcoRV GATATC 2 cut(s) 16, 553
EcoT22I ATGCAT 1 cut(s) 656
FaeI CATG 6 cut(s) 395, 538, 571, 658, 800, 977
FaqI GGGAC 2 cut(s) 299, 849
FatI CATG 6 cut(s) 391, 534, 567, 654, 796, 973
FauNDI CATATG 1 cut(s) 322
FbaI TGATCA 1 cut(s) 694
Fnu4HI GCNGC 5 cut(s) 148, 425, 615, 629, 801
FokI GGATG 2 cut(s) 606, 663
Fsp4HI GCNGC 5 cut(s) 148, 425, 615, 629, 801
FspBI CTAG 1 cut(s) 605
GluI GCNGC 5 cut(s) 148, 425, 615, 629, 801
GsuI CTGGAG 1 cut(s) 494
HaeIII GGCC 2 cut(s) 413, 749
HapII CCGG 2 cut(s) 588, 818
Hin1II CATG 6 cut(s) 395, 538, 571, 658, 800, 977
HinfI GANTC 4 cut(s) 109, 225, 300, 530
HpaII CCGG 2 cut(s) 588, 818
HphI GGTGA 2 cut(s) 212, 620
Hpy166II GTNNAC 2 cut(s) 70, 299
Hpy188I TCNGA 5 cut(s) 48, 345, 726, 888, 912
Hpy188III TCNNGA 5 cut(s) 11, 80, 449, 497, 518
Hpy8I GTNNAC 2 cut(s) 70, 299
HpyAV CCTTC 2 cut(s) 424, 446
HpyCH4III ACNGT 3 cut(s) 169, 296, 671
HpyF3I CTNAG 5 cut(s) 19, 47, 528, 723, 752
Hsp92II CATG 6 cut(s) 395, 538, 571, 658, 800, 977
Ksp22I TGATCA 1 cut(s) 694
Kzo9I GATC 4 cut(s) 171, 345, 442, 694
LmnI GCTCC 4 cut(s) 4, 215, 474, 719
Lsp1109I GCAGC 5 cut(s) 134, 436, 601, 640, 812
LweI GCATC 3 cut(s) 601, 641, 724
MaeI CTAG 1 cut(s) 605
MaeIII GTNAC 2 cut(s) 163, 671
MalI GATC 4 cut(s) 173, 347, 444, 696
MboI GATC 4 cut(s) 171, 345, 442, 694
MboII GAAGA 5 cut(s) 191, 340, 475, 768, 901
MfeI CAATTG 2 cut(s) 660, 738
MflI RGATCY 1 cut(s) 345
MhlI GDGCHC 1 cut(s) 440
MluCI AATT 8 cut(s) 248, 280, 513, 660, 738, 857, 932, 947
MlyI GAGTC 2 cut(s) 294, 539
MmeI TCCRAC 1 cut(s) 13
MnlI CCTC 8 cut(s) 456, 459, 469, 641, 658, 682, 720, 771
Mph1103I ATGCAT 1 cut(s) 656
MseI TTAA 2 cut(s) 153, 327
MslI CAYNNNNRTG 2 cut(s) 130, 809
MspI CCGG 2 cut(s) 588, 818
MspR9I CCNGG 4 cut(s) 473, 580, 589, 869
MunI CAATTG 2 cut(s) 660, 738
Mva1269I GAATGC 1 cut(s) 103
MvaI CCWGG 3 cut(s) 473, 580, 869
NciI CCSGG 1 cut(s) 589
NdeI CATATG 1 cut(s) 322
NdeII GATC 4 cut(s) 171, 345, 442, 694
NlaIII CATG 6 cut(s) 395, 538, 571, 658, 800, 977
NlaIV GGNNCC 6 cut(s) 217, 470, 586, 715, 816, 865
NsiI ATGCAT 1 cut(s) 656
NspI RCATGY 1 cut(s) 800
PaeI GCATGC 1 cut(s) 800
PaqCI CACCTGC 1 cut(s) 296
PctI GAATGC 1 cut(s) 103
PfeI GAWTC 2 cut(s) 109, 225
PflMI CCANNNNNTGG 1 cut(s) 638
PfoI TCCNGGA 1 cut(s) 471
PkrI GCNGC 5 cut(s) 149, 426, 616, 630, 802
PleI GAGTC 2 cut(s) 294, 538
PpsI GAGTC 2 cut(s) 294, 538
Psp6I CCWGG 3 cut(s) 471, 578, 867
PspGI CCWGG 3 cut(s) 471, 578, 867
PspN4I GGNNCC 6 cut(s) 217, 470, 586, 715, 816, 865
PspPI GGNCC 2 cut(s) 748, 863
PsuI RGATCY 1 cut(s) 345
RsaI GTAC 3 cut(s) 368, 709, 836
RsaNI GTAC 3 cut(s) 367, 708, 835
RseI CAYNNNNRTG 2 cut(s) 130, 809
SaqAI TTAA 2 cut(s) 153, 327
SatI GCNGC 5 cut(s) 148, 425, 615, 629, 801
Sau3AI GATC 4 cut(s) 171, 345, 442, 694
Sau96I GGNCC 2 cut(s) 748, 863
ScaI AGTACT 2 cut(s) 368, 709
SchI GAGTC 2 cut(s) 294, 539
ScrFI CCNGG 4 cut(s) 473, 580, 589, 869
SduI GDGCHC 1 cut(s) 440
SfaNI GCATC 3 cut(s) 601, 641, 724
SfcI CTRYAG 1 cut(s) 292
SinI GGWCC 1 cut(s) 863
SmiMI CAYNNNNRTG 2 cut(s) 130, 809
SphI GCATGC 1 cut(s) 800
Sse9I AATT 8 cut(s) 248, 280, 513, 660, 738, 857, 932, 947
SspMI CTAG 1 cut(s) 605
StyD4I CCNGG 4 cut(s) 471, 578, 587, 867
TaaI ACNGT 3 cut(s) 169, 296, 671
TaqI TCGA 3 cut(s) 59, 107, 245
TasI AATT 8 cut(s) 248, 280, 513, 660, 738, 857, 932, 947
TatI WGTACW 2 cut(s) 366, 707
TfiI GAWTC 2 cut(s) 109, 225
Tru1I TTAA 2 cut(s) 153, 327
Tru9I TTAA 2 cut(s) 153, 327
TscAI CASTG 3 cut(s) 174, 301, 445
TseI GCWGC 5 cut(s) 147, 424, 614, 628, 800
TspDTI ATGAA 1 cut(s) 64
TspRI CASTG 3 cut(s) 174, 301, 445
Van91I CCANNNNNTGG 1 cut(s) 638
VpaK11BI GGWCC 1 cut(s) 863
XagI CCTNNNNNAGG 1 cut(s) 450
XapI RAATTY 2 cut(s) 857, 947
XceI RCATGY 1 cut(s) 800
XspI CTAG 1 cut(s) 605
ZrmI AGTACT 2 cut(s) 368, 709
Zsp2I ATGCAT 1 cut(s) 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.