Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0017486

Physical Location & Seq

Genomic Coordinates Reverse (-)

5829839 .. 5831566

Gene Structure 1728 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGTCAGAAAGGAAGCCTTACCCTACACCCATGAAGGTTTTGATTCGAAGAGCCAAGGAGGAGAAAGAAGCCCGGAAGGCTGAGCCTTGCAGGATGCTTGAGGAACCACCTGATAATGGATTGTTGGTACCTGAATTGGTTGAGGTAGCTCATCAAGTTTACCAAGCTCGAAAGTCCCTCCTGTTTGGCTTGTCAAAACTTGTCCAAGTTGTTCCTGTCCAACGGTGCAGGTTTTGCTCTGAAGTTCACATTGGACATGTCGGTCATGAAATCCGAACTTGTACGGGCCCAAACAGTGGTTTTAGGAGTGCGACACATGTTTGGAGTAAGGGAGGAGTTCAACATGTGGTTTCCTTTCCTAAATGCTTCCATCTTTTTGACCGTGTTGGAAAACCAAGAGTTGGGCATGATGAGAGGTTTGAAATCCCACGAATCCCTGCCATTTTGGAGCTCTGTATACAGGCTGGTTTAGAGATTGACAAGTACCCAACAAAGAGAAGAACGAGACCTGTATATAGTATTGAAGGAAGAATTGTAGACTTTGAGTTGGTCAACAAAATGGATGATGTGAATAGGAACTCATATTCTGGGATTGTTGATCTCGTAGTACATTCTGATATTAAAACTGATGTTGAGGAGTTGAGGAATTCAGATTTACAGAGTGATACTAACCTTGTGGATAAAACATTACCGAGTGATAAAGTGGGGAAGTCTTTGAGCGAGTTAAGTATTATTACAATGGACTCATGGTTTGAGATGATATCTGGAGCAAAGAAGATCATGGAGAAATACAGTGTGAAGACTTGTGGGTATTGTTTAGAGGTTCAGGTAGGTCCCAAGGGGCACAAAGTGAGGATGTGCAAAGCTTCAAAGCATCAATCTCGTAATGGTTTGCATGCTTGGCAAGAAGCAACAATAGACGATCTTGTGGGTCCGAATTATGTTTGGCATGTCCGCGACATAGATGGTCCTGCTCTGGATAACAACCTGAAGAGGTATTACGGGAAGGCTCCAGCTGTGGTGGAGCTATGCGTGCAGGCAGGCGCACCTGTGCCAAATGAATATAGGAGTATGATGAGATTAGATGTAGCTTCTCCAGAGCGCGACGAGGTTGATCTGGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

APO_RNA-bind

Protein Analysis

376

Amino Acids

42.4

Weight (kDa)

8.24

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APO_RNA-bind	PF05634	2 - 180	7.5e-76	APO RNA-binding
APO_RNA-bind	PF05634	226 - 357	1.2e-25	APO RNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61930 AT5G61930
malus_domestica	MD07G1081600.v1.1 MD07G1081900.v1.1
prunus_persica	Prupe.1G162900_v2.0.a1 Prupe.1G162900_v2.0.a1 Prupe.1G162900_v2.0.a1 Prupe.1G162900_v2.0.a1 Prupe.1G162900_v2.0.a1 Prupe.7G037300_v2.0.a1 Prupe.7G037300_v2.0.a1
pyrus_communis	pycom07g06520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	261
Acc36I	ACCTGC	1 cut(s)	219
Acc65I	GGTACC	1 cut(s)	127
AccB1I	GGYRCC	1 cut(s)	127
AccB7I	CCANNNNNTGG	2 cut(s)	296, 401
AccI	GTMKAC	2 cut(s)	457, 537
AccII	CGCG	2 cut(s)	957, 1104
AciI	CCGC	1 cut(s)	955
AcsI	RAATTY	1 cut(s)	646
AcuI	CTGAAG	2 cut(s)	261, 1010
AdeI	CACNNNGTG	1 cut(s)	850
AfaI	GTAC	4 cut(s)	129, 283, 485, 609
AfiI	CCNNNNNNNGG	3 cut(s)	116, 296, 401
AflIII	ACRYGT	3 cut(s)	256, 316, 343
AgsI	TTSAA	4 cut(s)	341, 422, 524, 870
AjuI	GAANNNNNNNTTGG	2 cut(s)	234, 266
AluBI	AGCT	7 cut(s)	149, 167, 451, 866, 1016, 1027, 1091
AluI	AGCT	7 cut(s)	149, 167, 451, 866, 1016, 1027, 1091
Alw21I	GWGCWC	1 cut(s)	453
Alw26I	GTCTC	1 cut(s)	499
AoxI	GGCC	1 cut(s)	286
ApaI	GGGCCC	1 cut(s)	290
ApoI	RAATTY	1 cut(s)	646
ArsI	GACNNNNNNTTYG	2 cut(s)	734, 766
Asp718I	GGTACC	1 cut(s)	127
AspLEI	GCGC	2 cut(s)	1046, 1104
AspS9I	GGNCC	5 cut(s)	286, 287, 833, 932, 968
AsuC2I	CCSGG	1 cut(s)	73
AsuII	TTCGAA	1 cut(s)	46
AvaII	GGWCC	3 cut(s)	833, 932, 968
BaeGI	GKGCMC	2 cut(s)	290, 846
BanI	GGYRCC	1 cut(s)	127
BanII	GRGCYC	2 cut(s)	290, 453
BarI	GAAGNNNNNNTAC	2 cut(s)	983, 1015
BbsI	GAAGAC	1 cut(s)	806
Bbv12I	GWGCWC	1 cut(s)	453
BccI	CCATC	2 cut(s)	378, 959
BcgI	CGANNNNNNTGC	2 cut(s)	863, 897
BcnI	CCSGG	1 cut(s)	73
BcoDI	GTCTC	1 cut(s)	499
BfuAI	ACCTGC	1 cut(s)	219
BglI	GCCNNNNNGGC	1 cut(s)	77
BlpI	GCTNAGC	1 cut(s)	81
Bme1390I	CCNGG	1 cut(s)	73
Bme18I	GGWCC	3 cut(s)	833, 932, 968
BmgT120I	GGNCC	5 cut(s)	286, 287, 833, 932, 968
BmiI	GGNNCC	6 cut(s)	105, 129, 288, 835, 933, 1011
BmrFI	CCNGG	1 cut(s)	73
BmsI	GCATC	2 cut(s)	84, 883
BpiI	GAAGAC	1 cut(s)	806
BpmI	CTGGAG	3 cut(s)	786, 996, 1080
Bpu1102I	GCTNAGC	1 cut(s)	81
Bpu14I	TTCGAA	1 cut(s)	46
BpuEI	CTTGAG	1 cut(s)	119
BpuMI	CCSGG	1 cut(s)	73
BsaI	GGTCTC	1 cut(s)	499
BsaJI	CCNNGG	2 cut(s)	54, 837
Bsc4I	CCNNNNNNNGG	3 cut(s)	116, 296, 401
BseDI	CCNNGG	2 cut(s)	54, 837
BseGI	GGATG	3 cut(s)	99, 568, 861
BseLI	CCNNNNNNNGG	3 cut(s)	116, 296, 401
BseMII	CTCAG	1 cut(s)	72
BseRI	GAGGAG	3 cut(s)	74, 348, 650
BseSI	GKGCMC	2 cut(s)	290, 846
BsgI	GTGCAG	2 cut(s)	247, 1055
Bsh1236I	CGCG	2 cut(s)	957, 1104
BshFI	GGCC	1 cut(s)	288
BshNI	GGYRCC	1 cut(s)	127
BsiHKAI	GWGCWC	1 cut(s)	453
BsiSI	CCGG	1 cut(s)	73
BslFI	GGGAC	2 cut(s)	160, 819
BslI	CCNNNNNNNGG	3 cut(s)	116, 296, 401
BsmAI	GTCTC	1 cut(s)	499
BsmFI	GGGAC	2 cut(s)	160, 819
BsnI	GGCC	1 cut(s)	288
Bso31I	GGTCTC	1 cut(s)	499
Bsp119I	TTCGAA	1 cut(s)	46
Bsp120I	GGGCCC	1 cut(s)	286
Bsp1286I	GDGCHC	3 cut(s)	290, 453, 846
Bsp143I	GATC	4 cut(s)	598, 777, 922, 1114
Bsp1720I	GCTNAGC	1 cut(s)	81
BspACI	CCGC	1 cut(s)	955
BspANI	GGCC	1 cut(s)	288
BspCNI	CTCAG	1 cut(s)	73
BspFNI	CGCG	2 cut(s)	957, 1104
BspHI	TCATGA	1 cut(s)	265
BspLI	GGNNCC	6 cut(s)	105, 129, 288, 835, 933, 1011
BspMI	ACCTGC	1 cut(s)	219
BspQI	GCTCTTC	1 cut(s)	43
BspT104I	TTCGAA	1 cut(s)	46
BspT107I	GGYRCC	1 cut(s)	127
BspTNI	GGTCTC	1 cut(s)	499
BssECI	CCNNGG	2 cut(s)	54, 837
BssMI	GATC	4 cut(s)	598, 777, 922, 1114
BssNAI	GTATAC	1 cut(s)	458
BssT1I	CCWWGG	2 cut(s)	54, 837
Bst1107I	GTATAC	1 cut(s)	458
Bst4CI	ACNGT	4 cut(s)	225, 296, 383, 794
Bst6I	CTCTTC	2 cut(s)	43, 986
BstAPI	GCANNNNNTGC	1 cut(s)	234
BstBI	TTCGAA	1 cut(s)	46
BstC8I	GCNNGC	4 cut(s)	897, 1034, 1038, 1042
BstDEI	CTNAG	1 cut(s)	81
BstF5I	GGATG	3 cut(s)	99, 568, 861
BstFNI	CGCG	2 cut(s)	957, 1104
BstHHI	GCGC	2 cut(s)	1046, 1104
BstKTI	GATC	4 cut(s)	601, 780, 925, 1117
BstMAI	GTCTC	1 cut(s)	499
BstMBI	GATC	4 cut(s)	598, 777, 922, 1114
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 234, 901, 1033
BstNSI	RCATGY	5 cut(s)	260, 320, 347, 899, 953
BstSCI	CCNGG	1 cut(s)	71
BstSLI	GKGCMC	2 cut(s)	290, 846
BstUI	CGCG	2 cut(s)	957, 1104
BstV2I	GAAGAC	1 cut(s)	806
BstZ17I	GTATAC	1 cut(s)	458
BsuRI	GGCC	1 cut(s)	288
BtsCI	GGATG	3 cut(s)	99, 568, 861
BtsIMutI	CAGTG	2 cut(s)	301, 799
BveI	ACCTGC	1 cut(s)	219
Cac8I	GCNNGC	4 cut(s)	897, 1034, 1038, 1042
CciI	TCATGA	1 cut(s)	265
CfoI	GCGC	2 cut(s)	1046, 1104
Cfr13I	GGNCC	5 cut(s)	286, 287, 833, 932, 968
Csp6I	GTAC	4 cut(s)	128, 282, 484, 608
CviQI	GTAC	4 cut(s)	128, 282, 484, 608
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	4 cut(s)	600, 779, 924, 1116
DpnII	GATC	4 cut(s)	598, 777, 922, 1114
DraIII	CACNNNGTG	1 cut(s)	850
DrdI	GACNNNNNNGTC	1 cut(s)	261
DseDI	GACNNNNNNGTC	1 cut(s)	261
Eam1104I	CTCTTC	2 cut(s)	43, 986
EarI	CTCTTC	2 cut(s)	43, 986
Ecl136II	GAGCTC	1 cut(s)	451
Eco130I	CCWWGG	2 cut(s)	54, 837
Eco24I	GRGCYC	2 cut(s)	290, 453
Eco31I	GGTCTC	1 cut(s)	499
Eco32I	GATATC	1 cut(s)	762
Eco47I	GGWCC	3 cut(s)	833, 932, 968
Eco53kI	GAGCTC	1 cut(s)	451
Eco57I	CTGAAG	2 cut(s)	261, 1010
EcoICRI	GAGCTC	1 cut(s)	451
EcoO109I	RGGNCCY	1 cut(s)	833
EcoRI	GAATTC	1 cut(s)	646
EcoRV	GATATC	1 cut(s)	762
EcoT14I	CCWWGG	2 cut(s)	54, 837
EcoT38I	GRGCYC	2 cut(s)	290, 453
ErhI	CCWWGG	2 cut(s)	54, 837
FalI	AAGNNNNNCTT	1 cut(s)	33
FaqI	GGGAC	2 cut(s)	160, 819
FblI	GTMKAC	2 cut(s)	457, 537
FokI	GGATG	3 cut(s)	106, 575, 868
FriOI	GRGCYC	2 cut(s)	290, 453
GlaI	GCGC	2 cut(s)	1045, 1103
GsuI	CTGGAG	3 cut(s)	786, 996, 1080
HaeIII	GGCC	1 cut(s)	288
HapII	CCGG	1 cut(s)	73
HhaI	GCGC	2 cut(s)	1046, 1104
Hin6I	GCGC	2 cut(s)	1044, 1102
HinP1I	GCGC	2 cut(s)	1044, 1102
HincII	GTYRAC	1 cut(s)	553
HindII	GTYRAC	1 cut(s)	553
HindIII	AAGCTT	1 cut(s)	864
HinfI	GANTC	3 cut(s)	43, 432, 743
HpaII	CCGG	1 cut(s)	73
Hpy166II	GTNNAC	5 cut(s)	160, 247, 458, 538, 553
Hpy188I	TCNGA	6 cut(s)	7, 241, 275, 616, 652, 936
Hpy188III	TCNNGA	4 cut(s)	266, 765, 977, 1097
Hpy8I	GTNNAC	5 cut(s)	160, 247, 458, 538, 553
Hpy99I	CGWCG	1 cut(s)	1109
HpyAV	CCTTC	4 cut(s)	28, 70, 518, 1000
HpyCH4III	ACNGT	4 cut(s)	225, 296, 383, 794
HpyCH4V	TGCA	5 cut(s)	90, 228, 861, 895, 1036
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 234, 901, 1033
HpyF3I	CTNAG	1 cut(s)	81
HspAI	GCGC	2 cut(s)	1044, 1102
KpnI	GGTACC	1 cut(s)	131
Kzo9I	GATC	4 cut(s)	598, 777, 922, 1114
LguI	GCTCTTC	1 cut(s)	43
LmnI	GCTCC	4 cut(s)	448, 767, 1015, 1024
LweI	GCATC	2 cut(s)	84, 883
MalI	GATC	4 cut(s)	600, 779, 924, 1116
MboI	GATC	4 cut(s)	598, 777, 922, 1114
MboII	GAAGA	6 cut(s)	60, 510, 540, 787, 811, 1003
MhlI	GDGCHC	3 cut(s)	290, 453, 846
MluCI	AATT	4 cut(s)	134, 531, 646, 937
MlyI	GAGTC	1 cut(s)	737
MmeI	TCCRAC	2 cut(s)	244, 367
MseI	TTAA	2 cut(s)	621, 725
MspA1I	CMGCKG	1 cut(s)	1016
MspI	CCGG	1 cut(s)	73
MspR9I	CCNGG	1 cut(s)	73
MvnI	CGCG	2 cut(s)	957, 1104
MwoI	GCNNNNNNNGC	4 cut(s)	77, 234, 901, 1033
NciI	CCSGG	1 cut(s)	73
NdeII	GATC	4 cut(s)	598, 777, 922, 1114
NlaIV	GGNNCC	6 cut(s)	105, 129, 288, 835, 933, 1011
NspI	RCATGY	5 cut(s)	260, 320, 347, 899, 953
NspV	TTCGAA	1 cut(s)	46
PaeI	GCATGC	1 cut(s)	899
PagI	TCATGA	1 cut(s)	265
PciI	ACATGT	3 cut(s)	256, 316, 343
PciSI	GCTCTTC	1 cut(s)	43
PfeI	GAWTC	2 cut(s)	43, 432
PflMI	CCANNNNNTGG	2 cut(s)	296, 401
PleI	GAGTC	1 cut(s)	737
PpsI	GAGTC	1 cut(s)	737
PpuMI	RGGWCCY	1 cut(s)	833
PscI	ACATGT	3 cut(s)	256, 316, 343
Psp124BI	GAGCTC	1 cut(s)	453
Psp5II	RGGWCCY	1 cut(s)	833
PspN4I	GGNNCC	6 cut(s)	105, 129, 288, 835, 933, 1011
PspOMI	GGGCCC	1 cut(s)	286
PspPI	GGNCC	5 cut(s)	286, 287, 833, 932, 968
PspPPI	RGGWCCY	1 cut(s)	833
PvuII	CAGCTG	1 cut(s)	1016
RsaI	GTAC	4 cut(s)	129, 283, 485, 609
RsaNI	GTAC	4 cut(s)	128, 282, 484, 608
SacI	GAGCTC	1 cut(s)	453
SapI	GCTCTTC	1 cut(s)	43
SaqAI	TTAA	2 cut(s)	621, 725
Sau3AI	GATC	4 cut(s)	598, 777, 922, 1114
Sau96I	GGNCC	5 cut(s)	286, 287, 833, 932, 968
SchI	GAGTC	1 cut(s)	737
ScrFI	CCNGG	1 cut(s)	73
SduI	GDGCHC	3 cut(s)	290, 453, 846
SfaNI	GCATC	2 cut(s)	84, 883
SfuI	TTCGAA	1 cut(s)	46
SinI	GGWCC	3 cut(s)	833, 932, 968
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
SphI	GCATGC	1 cut(s)	899
Sse9I	AATT	4 cut(s)	134, 531, 646, 937
SsiI	CCGC	1 cut(s)	955
SstI	GAGCTC	1 cut(s)	453
StyD4I	CCNGG	1 cut(s)	71
StyI	CCWWGG	2 cut(s)	54, 837
TaaI	ACNGT	4 cut(s)	225, 296, 383, 794
TaqI	TCGA	2 cut(s)	46, 169
TaqII	GACCGA	1 cut(s)	251
TasI	AATT	4 cut(s)	134, 531, 646, 937
TatI	WGTACW	1 cut(s)	607
TfiI	GAWTC	2 cut(s)	43, 432
Tru1I	TTAA	2 cut(s)	621, 725
Tru9I	TTAA	2 cut(s)	621, 725
TscAI	CASTG	2 cut(s)	301, 799
TspDTI	ATGAA	3 cut(s)	47, 282, 1074
TspRI	CASTG	2 cut(s)	301, 799
Van91I	CCANNNNNTGG	2 cut(s)	296, 401
VpaK11BI	GGWCC	3 cut(s)	833, 932, 968
XapI	RAATTY	1 cut(s)	646
XceI	RCATGY	5 cut(s)	260, 320, 347, 899, 953
XmiI	GTMKAC	2 cut(s)	457, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.