pycom07g11380

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0010873
Physical Location & Seq
Reverse (-)
12071140 .. 12071596
457 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g11380.2

Sequence Viewer

Length: 333 bp
ATGTGTTTGAACTCAGAAACGTCTCCATCTAGTCCTCTTTACTCTTCTTCTCGCCTTAGAAGGCCATCAAAGCAAAACAACTTTCGAGTTCGCCGCCTAATTAACAGGAAGGGAAGACCAGGAGCGGCAGCAACAGAGGCAGAGACAGGAGGAGGGGCAAAGATAGAGATGCAAATGAAGAACTTGAAGCTTTACATGGAGAACCAGATCATTATAGAAGAGAATAACAAGCTGAGGAGAAAAGCGCTTCTTCTCGTCCAAGAAAACCAGGCCTTGTTTTCACAGCTCCAACAAAAGCAGCTTTCTCTCACCAAAACAACAGCAGCAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.43

Weight (kDa)

10.57

Isoelectric Point (pI)

78.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010873)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45450 AT3G60890 AT3G60890 AT3G60890
fragaria_vesca FvH4_7g12070
malus_domestica MD02G1201500.v1.1 MD07G1124000.v1.1
prunus_persica Prupe.2G147300_v2.0.a1
pyrus_communis pycom02g16490 pycom07g11380
rosa_chinensis RchiOBHm_Chr1g0350821
rosa_laevigata RLG00000028453
rosa_roxburghii Rroxscaffold_4G00304490
rosa_rugosa Rorug01G0214200 Rorug01G0214300
rosa_samantha Rh1AG228800 Rh1BG198800 Rh1CG213600 Rh1DG226700
rosa_wichuraiana Rw1G019800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 125
AciI CCGC 2 cut(s) 94, 125
AfeI AGCGCT 1 cut(s) 246
AgsI TTSAA 2 cut(s) 10, 187
AjnI CCWGG 2 cut(s) 118, 267
AluBI AGCT 4 cut(s) 190, 232, 286, 301
AluI AGCT 4 cut(s) 190, 232, 286, 301
Alw26I GTCTC 2 cut(s) 27, 137
Aor51HI AGCGCT 1 cut(s) 246
AoxI GGCC 2 cut(s) 62, 270
ApeKI GCWGC 3 cut(s) 128, 298, 323
AspLEI GCGC 1 cut(s) 247
AsuHPI GGTGA 1 cut(s) 301
BbsI GAAGAC 1 cut(s) 121
BbvCI CCTCAGC 1 cut(s) 233
BbvI GCAGC 2 cut(s) 140, 310
BccI CCATC 2 cut(s) 34, 73
BciT130I CCWGG 2 cut(s) 120, 269
BcoDI GTCTC 2 cut(s) 27, 137
BfaI CTAG 1 cut(s) 30
BfoI RGCGCY 1 cut(s) 248
BisI GCNGC 5 cut(s) 94, 126, 129, 299, 324
BlsI GCNGC 5 cut(s) 95, 127, 130, 300, 325
Bme1390I CCNGG 2 cut(s) 120, 269
BmrFI CCNGG 2 cut(s) 120, 269
BmsI GCATC 1 cut(s) 159
BpiI GAAGAC 1 cut(s) 121
Bpu10I CCTNAGC 1 cut(s) 233
BseBI CCWGG 2 cut(s) 120, 269
BseMII CTCAG 2 cut(s) 27, 224
BseRI GAGGAG 2 cut(s) 165, 250
BseXI GCAGC 2 cut(s) 140, 310
BshFI GGCC 2 cut(s) 64, 272
BsmAI GTCTC 2 cut(s) 27, 137
BsmBI CGTCTC 1 cut(s) 27
BsnI GGCC 2 cut(s) 64, 272
Bsp143I GATC 1 cut(s) 207
BspACI CCGC 2 cut(s) 94, 125
BspANI GGCC 2 cut(s) 64, 272
BspCNI CTCAG 2 cut(s) 26, 225
BsrBI CCGCTC 1 cut(s) 125
BssMI GATC 1 cut(s) 207
Bst2UI CCWGG 2 cut(s) 120, 269
Bst6I CTCTTC 2 cut(s) 49, 213
BstDEI CTNAG 3 cut(s) 13, 56, 233
BstH2I RGCGCY 1 cut(s) 248
BstHHI GCGC 1 cut(s) 247
BstKTI GATC 1 cut(s) 210
BstMAI GTCTC 2 cut(s) 27, 137
BstMBI GATC 1 cut(s) 207
BstMWI GCNNNNNNNGC 2 cut(s) 70, 137
BstNI CCWGG 2 cut(s) 120, 269
BstSCI CCNGG 2 cut(s) 118, 267
BstV1I GCAGC 2 cut(s) 140, 310
BstV2I GAAGAC 1 cut(s) 121
BsuRI GGCC 2 cut(s) 64, 272
CfoI GCGC 1 cut(s) 247
CviAII CATG 1 cut(s) 196
CviJI RGCY 6 cut(s) 64, 190, 232, 272, 286, 301
CviKI_1 RGCY 6 cut(s) 64, 190, 232, 272, 286, 301
DdeI CTNAG 3 cut(s) 13, 56, 233
DpnI GATC 1 cut(s) 209
DpnII GATC 1 cut(s) 207
Eam1104I CTCTTC 2 cut(s) 49, 213
EarI CTCTTC 2 cut(s) 49, 213
Eco147I AGGCCT 1 cut(s) 272
Eco47III AGCGCT 1 cut(s) 246
EcoRII CCWGG 2 cut(s) 118, 267
Esp3I CGTCTC 1 cut(s) 27
FaeI CATG 1 cut(s) 199
FaiI YATR 3 cut(s) 197, 215, 331
FalI AAGNNNNNCTT 2 cut(s) 234, 266
FatI CATG 1 cut(s) 195
Fnu4HI GCNGC 5 cut(s) 94, 126, 129, 299, 324
Fsp4HI GCNGC 5 cut(s) 94, 126, 129, 299, 324
FspBI CTAG 1 cut(s) 30
GlaI GCGC 1 cut(s) 246
GluI GCNGC 5 cut(s) 94, 126, 129, 299, 324
HaeII RGCGCY 1 cut(s) 248
HaeIII GGCC 2 cut(s) 64, 272
HhaI GCGC 1 cut(s) 247
Hin1II CATG 1 cut(s) 199
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HindIII AAGCTT 1 cut(s) 188
HphI GGTGA 1 cut(s) 301
Hpy188I TCNGA 1 cut(s) 16
HpyAV CCTTC 2 cut(s) 54, 103
HpyCH4IV ACGT 1 cut(s) 20
HpyCH4V TGCA 1 cut(s) 172
HpyF10VI GCNNNNNNNGC 2 cut(s) 70, 137
HpyF3I CTNAG 3 cut(s) 13, 56, 233
HpySE526I ACGT 1 cut(s) 20
Hsp92II CATG 1 cut(s) 199
HspAI GCGC 1 cut(s) 245
Kzo9I GATC 1 cut(s) 207
LmnI GCTCC 2 cut(s) 122, 291
LpnPI CCDG 7 cut(s) 91, 105, 132, 132, 218, 254, 281
Lsp1109I GCAGC 2 cut(s) 140, 310
LweI GCATC 1 cut(s) 159
MaeI CTAG 1 cut(s) 30
MaeII ACGT 1 cut(s) 20
MalI GATC 1 cut(s) 209
MbiI CCGCTC 1 cut(s) 125
MboI GATC 1 cut(s) 207
MboII GAAGA 6 cut(s) 36, 39, 126, 190, 230, 242
MluCI AATT 1 cut(s) 99
MmeI TCCRAC 1 cut(s) 313
MnlI CCTC 5 cut(s) 45, 130, 143, 146, 228
MseI TTAA 1 cut(s) 102
MspR9I CCNGG 2 cut(s) 120, 269
MvaI CCWGG 2 cut(s) 120, 269
MwoI GCNNNNNNNGC 2 cut(s) 70, 137
NdeII GATC 1 cut(s) 207
NlaIII CATG 1 cut(s) 199
PceI AGGCCT 1 cut(s) 272
PkrI GCNGC 5 cut(s) 95, 127, 130, 300, 325
Psp6I CCWGG 2 cut(s) 118, 267
PspGI CCWGG 2 cut(s) 118, 267
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 5 cut(s) 94, 126, 129, 299, 324
Sau3AI GATC 1 cut(s) 207
ScrFI CCNGG 2 cut(s) 120, 269
SetI ASST 5 cut(s) 23, 192, 234, 288, 303
SfaNI GCATC 1 cut(s) 159
Sse9I AATT 1 cut(s) 99
SseBI AGGCCT 1 cut(s) 272
SsiI CCGC 2 cut(s) 94, 125
SspMI CTAG 1 cut(s) 30
StuI AGGCCT 1 cut(s) 272
StyD4I CCNGG 2 cut(s) 118, 267
TaiI ACGT 1 cut(s) 23
TaqI TCGA 1 cut(s) 85
TasI AATT 1 cut(s) 99
TauI GCSGC 2 cut(s) 96, 128
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TseI GCWGC 3 cut(s) 128, 298, 323
TspDTI ATGAA 1 cut(s) 191
XspI CTAG 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.