Rorug01G0214200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0010873
Physical Location & Seq
Forward (+)
30450046 .. 30450318
273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0214200.1

Sequence Viewer

Length: 273 bp
ATGCTCTCTCGGCTGTCTGAGCTCTTCCTCACCCTAGAGTATGATGCGGGTGCCTCTTACTTCTTGTCAAGGCTTCCTGGATTTTTTGGAGAATATGTTGGCCTAACTGGTGCCAAATTGGATGGTCCTGAAATGCTTGCTTGCGGTCTAGCAACTCATTTTGTTCCCTCGACCAAATTGGCTTTGTTAGAAGAAGCTCTAGTATCCAAAGTTGCTTCTTCACCAATAATATCTCGAGCCATGATTTTTCATTTTATGTTTTGGCTATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

9.91

Weight (kDa)

5.52

Isoelectric Point (pI)

36.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ECH_2 PF16113 10 - 72 2.3e-19 Enoyl-CoA hydratase/isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010873)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45450 AT3G60890 AT3G60890 AT3G60890
fragaria_vesca FvH4_7g12070
malus_domestica MD02G1201500.v1.1 MD07G1124000.v1.1
prunus_persica Prupe.2G147300_v2.0.a1
pyrus_communis pycom02g16490 pycom07g11380
rosa_chinensis RchiOBHm_Chr1g0350821
rosa_laevigata RLG00000028453
rosa_roxburghii Rroxscaffold_4G00304490
rosa_rugosa Rorug01G0214200 Rorug01G0214300
rosa_samantha Rh1AG228800 Rh1BG198800 Rh1CG213600 Rh1DG226700
rosa_wichuraiana Rw1G019800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 271
AccB1I GGYRCC 2 cut(s) 50, 110
AciI CCGC 2 cut(s) 47, 144
AjnI CCWGG 1 cut(s) 76
AluBI AGCT 2 cut(s) 22, 197
AluI AGCT 2 cut(s) 22, 197
Alw21I GWGCWC 1 cut(s) 24
Ama87I CYCGRG 1 cut(s) 234
AoxI GGCC 1 cut(s) 100
AspS9I GGNCC 1 cut(s) 125
AsuHPI GGTGA 2 cut(s) 22, 213
AvaI CYCGRG 1 cut(s) 234
AvaII GGWCC 1 cut(s) 125
BanI GGYRCC 2 cut(s) 50, 110
BanII GRGCYC 1 cut(s) 24
Bbv12I GWGCWC 1 cut(s) 24
BccI CCATC 1 cut(s) 116
BciT130I CCWGG 1 cut(s) 78
BciVI GTATCC 1 cut(s) 214
BfaI CTAG 3 cut(s) 35, 149, 200
BfuI GTATCC 1 cut(s) 214
Bme1390I CCNGG 1 cut(s) 78
Bme18I GGWCC 1 cut(s) 125
BmeT110I CYCGRG 1 cut(s) 234
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 2 cut(s) 52, 112
BmrFI CCNGG 1 cut(s) 78
BmsI GCATC 1 cut(s) 34
BsaXI ACNNNNNCTCC 2 cut(s) 81, 111
Bse1I ACTGG 1 cut(s) 112
BseBI CCWGG 1 cut(s) 78
BseGI GGATG 1 cut(s) 127
BseMII CTCAG 1 cut(s) 9
BseNI ACTGG 1 cut(s) 112
BshFI GGCC 1 cut(s) 102
BshNI GGYRCC 2 cut(s) 50, 110
BsiHKAI GWGCWC 1 cut(s) 24
BsiHKCI CYCGRG 1 cut(s) 234
BsnI GGCC 1 cut(s) 102
BsoBI CYCGRG 1 cut(s) 234
Bsp1286I GDGCHC 1 cut(s) 24
BspACI CCGC 2 cut(s) 47, 144
BspANI GGCC 1 cut(s) 102
BspCNI CTCAG 1 cut(s) 10
BspLI GGNNCC 2 cut(s) 52, 112
BspQI GCTCTTC 1 cut(s) 29
BspT107I GGYRCC 2 cut(s) 50, 110
BsrI ACTGG 1 cut(s) 112
Bst2UI CCWGG 1 cut(s) 78
Bst6I CTCTTC 1 cut(s) 29
BstC8I GCNNGC 2 cut(s) 138, 142
BstDEI CTNAG 1 cut(s) 18
BstF5I GGATG 1 cut(s) 127
BstMWI GCNNNNNNNGC 2 cut(s) 10, 19
BstNI CCWGG 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 76
BsuI GTATCC 1 cut(s) 214
BsuRI GGCC 1 cut(s) 102
BtsCI GGATG 1 cut(s) 127
Cac8I GCNNGC 2 cut(s) 138, 142
Cfr13I GGNCC 1 cut(s) 125
CviAII CATG 1 cut(s) 241
CviJI RGCY 8 cut(s) 13, 22, 73, 102, 182, 197, 239, 265
CviKI_1 RGCY 8 cut(s) 13, 22, 73, 102, 182, 197, 239, 265
DdeI CTNAG 1 cut(s) 18
Eam1104I CTCTTC 1 cut(s) 29
EarI CTCTTC 1 cut(s) 29
Ecl136II GAGCTC 1 cut(s) 22
Eco24I GRGCYC 1 cut(s) 24
Eco47I GGWCC 1 cut(s) 125
Eco53kI GAGCTC 1 cut(s) 22
Eco88I CYCGRG 1 cut(s) 234
EcoICRI GAGCTC 1 cut(s) 22
EcoRII CCWGG 1 cut(s) 76
EcoT38I GRGCYC 1 cut(s) 24
FaeI CATG 1 cut(s) 244
FaiI YATR 5 cut(s) 42, 96, 242, 257, 271
FatI CATG 1 cut(s) 240
FauI CCCGC 1 cut(s) 40
FokI GGATG 1 cut(s) 134
FriOI GRGCYC 1 cut(s) 24
FspBI CTAG 3 cut(s) 35, 149, 200
HaeIII GGCC 1 cut(s) 102
Hin1II CATG 1 cut(s) 244
HphI GGTGA 2 cut(s) 22, 213
Hpy188I TCNGA 1 cut(s) 19
Hpy188III TCNNGA 2 cut(s) 128, 234
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 19
HpyF3I CTNAG 1 cut(s) 18
Hsp92II CATG 1 cut(s) 244
LguI GCTCTTC 1 cut(s) 29
LpnPI CCDG 4 cut(s) 63, 90, 93, 141
LweI GCATC 1 cut(s) 34
MaeI CTAG 3 cut(s) 35, 149, 200
MboII GAAGA 3 cut(s) 16, 203, 210
MhlI GDGCHC 1 cut(s) 24
MluCI AATT 2 cut(s) 116, 176
MnlI CCTC 3 cut(s) 38, 64, 178
MspR9I CCNGG 1 cut(s) 78
MvaI CCWGG 1 cut(s) 78
MwoI GCNNNNNNNGC 2 cut(s) 10, 19
NlaIII CATG 1 cut(s) 244
NlaIV GGNNCC 2 cut(s) 52, 112
PaeR7I CTCGAG 1 cut(s) 234
PciSI GCTCTTC 1 cut(s) 29
PfoI TCCNGGA 1 cut(s) 76
PsiI TTATAA 1 cut(s) 271
Psp124BI GAGCTC 1 cut(s) 24
Psp6I CCWGG 1 cut(s) 76
PspGI CCWGG 1 cut(s) 76
PspN4I GGNNCC 2 cut(s) 52, 112
PspPI GGNCC 1 cut(s) 125
SacI GAGCTC 1 cut(s) 24
SapI GCTCTTC 1 cut(s) 29
Sau96I GGNCC 1 cut(s) 125
ScrFI CCNGG 1 cut(s) 78
SduI GDGCHC 1 cut(s) 24
SetI ASST 2 cut(s) 24, 199
SfaNI GCATC 1 cut(s) 34
Sfr274I CTCGAG 1 cut(s) 234
SinI GGWCC 1 cut(s) 125
SlaI CTCGAG 1 cut(s) 234
SmlI CTYRAG 1 cut(s) 234
SmoI CTYRAG 1 cut(s) 234
Sse9I AATT 2 cut(s) 116, 176
SsiI CCGC 2 cut(s) 47, 144
SspMI CTAG 3 cut(s) 35, 149, 200
SstI GAGCTC 1 cut(s) 24
StyD4I CCNGG 1 cut(s) 76
TaqI TCGA 2 cut(s) 170, 235
TasI AATT 2 cut(s) 116, 176
TspDTI ATGAA 1 cut(s) 239
VpaK11BI GGWCC 1 cut(s) 125
XhoI CTCGAG 1 cut(s) 234
XspI CTAG 3 cut(s) 35, 149, 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.