Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0010591

Physical Location & Seq

Genomic Coordinates Forward (+)

16055048 .. 16058771

Gene Structure 3724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g14150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGGAGAGAGAGGAAAAAGGTGCGGAAAGTGAAAGGAAAAAGCAAGGAGGAGTGGTGGTTAAAAAGTTGAAACGCGGCGTGTTGGTGAGGAAAAGAGGGGGGCTTTGCAGTACTCCACCACCCATTTGGAGGCTCGTCGATTTCTGTTCTCAGAGTCACAGAAAACCCACCTCAGAATTTCTCAATCCTCACTCCGCAGCGTCAGTCTCTGCCAGAAAGCTCTGTTCCTCCGTCTGGGAAATCGAGCAAATGAGCAAAGCAGGCGGTGGGCTCCACCGCAAGCAGCGGAGGAGAAATGGGGTTGGGATTTCCAGGCTTCTGGTGGAGGCTGAGAGTCCTGCTGGCTCAACTCACGACCAGCCAGCAAGTGCAAGCAGCTTGCGGAGGCTTATATCAGCACCACTGATACAGCACCATCAATCAGTTGAGAGCAATGGTTGTGCACTTCAACCCCTATCTCCTGCTAGTTGTAGATCATTGGAGGTGGCACCTTATAAGGGAAGGATGGGCGAATCAAGTCGTAGCTTTAAAACATCCACAGAATTACTCAAAGTACTCAATCGTATCTGGACTCTTGAAGAGCAACAGGCATCTAATATATCATTGGTTGAAGCACTGAAATTGGAACTAGATCATTCTCATGCAAGAATTAAAGAGTTGTTGCATGAGAAAGAATCAGATAGGCAAGAAATGGGCAACTTGATGAAGCATGTTACAGAAAATAAACTTGTTTGGAAGAATAAGGACCAAGACCGAATCAAAGCTTCTGTCCAATTGCTTAGGGATGAGCTAGAAGGTGAGAGGAAGTTGAGAAAGCATTCAGAGAGCCTGCATTGGAAGCTAGCTCGAGAGCTCCCTGAAATGAAATCTTCTTTCTCTAATGCTCTGAGAGAGCTCGAAAGGGAGAGAAAAGCGCGTATCCTATTAGAAAACTTGTGCGATGAGTTTGCCAATGGAATAAAAGAGTATGAACAAGAGGTGCGATCCCTGAAGCAAAAGCCCGAGAAGGGTCACAGTGGTAACATCAGCTCTGACAGATTAATTCTCCATCTTTCAGAAGCATGGCTTGATGAACGGATGCAAATGAAGATGCCTGAAGCTCAGAGTGACCATGCGGAGAGGAATACAATTGTGGACAAGTTAGGTTTTGATATAGAAACCTTTCTTCAGGCTGATCGATCTGTTGATACAAAGAAAAATAGGAAGTTATCCCCAAAGGAGCTGAAGGGAAATTGCTCACGCGGGCAGTCATTAGAGTCCTTTCCTTTGAATCAGGCTACAAGTGCACCACAACATGTAGCTGATGAAGATTCCACCGACAATGATTCACACTCTGTAGACGTAAGCAAGAGTGCTAGTGGAAAGCAAATCAAGCGCGGCTCTAGACAGCGAAAAAATAATGTTGCAGAGGGCCAATATGAAGGAATAGCCAGATCTAATTCCGTGAGGGAGAAAGGAACATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

489

Amino Acids

55.16

Weight (kDa)

9.43

Isoelectric Point (pI)

50.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010591)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g15750 FvH4_7g15750 FvH4_7g15750
malus_domestica	MD01G1074000.v1.1 MD07G1142700.v1.1
prunus_persica	Prupe.2G182100_v2.0.a1 Prupe.2G182100_v2.0.a1 Prupe.2G182100_v2.0.a1 Prupe.2G182100_v2.0.a1
pyrus_communis	pycom01g10320 pycom07g14150
rosa_chinensis	RchiOBHm_Chr1g0358461
rosa_laevigata	RLG00000027956
rosa_multiflora	Rmu_sc0008220.1_g000009
rosa_roxburghii	Rroxscaffold_4G00297900
rosa_rugosa	Rorug01G0262200
rosa_samantha	Rh1AG276700 Rh1BG243200 Rh1CG260300 Rh1DG271500
rosa_wichuraiana	Rw1G024610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	495
AccB1I	GGYRCC	1 cut(s)	487
AccI	GTMKAC	1 cut(s)	1338
AccII	CGCG	4 cut(s)	75, 916, 1242, 1377
AclWI	GGATC	1 cut(s)	978
AcsI	RAATTY	1 cut(s)	176
AcuI	CTGAAG	4 cut(s)	1010, 1116, 1151, 1244
AfaI	GTAC	2 cut(s)	112, 555
AfiI	CCNNNNNNNGG	4 cut(s)	129, 234, 497, 1007
AflIII	ACRYGT	1 cut(s)	1294
AgsI	TTSAA	5 cut(s)	70, 449, 578, 611, 1270
AjnI	CCWGG	1 cut(s)	311
Alw21I	GWGCWC	4 cut(s)	445, 855, 897, 1288
Alw26I	GTCTC	1 cut(s)	211
Alw44I	GTGCAC	2 cut(s)	441, 1284
AlwI	GGATC	1 cut(s)	978
AlwNI	CAGNNNCTG	1 cut(s)	209
Ama87I	CYCGRG	2 cut(s)	846, 1001
AoxI	GGCC	1 cut(s)	1411
ApaLI	GTGCAC	2 cut(s)	441, 1284
ApeKI	GCWGC	3 cut(s)	197, 283, 375
ApoI	RAATTY	1 cut(s)	176
ArsI	GACNNNNNNTTYG	2 cut(s)	753, 785
AseI	ATTAAT	1 cut(s)	1040
Asp700I	GAANNNNTTC	2 cut(s)	817, 1161
AspLEI	GCGC	2 cut(s)	916, 1377
AspS9I	GGNCC	2 cut(s)	745, 1411
AsuHPI	GGTGA	2 cut(s)	97, 809
AsuNHI	GCTAGC	1 cut(s)	841
AvaI	CYCGRG	2 cut(s)	846, 1001
AvaII	GGWCC	1 cut(s)	745
BaeGI	GKGCMC	2 cut(s)	445, 1288
BanI	GGYRCC	1 cut(s)	487
BanII	GRGCYC	3 cut(s)	273, 855, 897
Bbv12I	GWGCWC	4 cut(s)	445, 855, 897, 1288
BbvI	GCAGC	3 cut(s)	209, 295, 387
BccI	CCATC	3 cut(s)	423, 499, 1056
BcgI	CGANNNNNNTGC	2 cut(s)	929, 963
BciT130I	CCWGG	1 cut(s)	313
BciVI	GTATCC	1 cut(s)	929
BcoDI	GTCTC	1 cut(s)	211
BfaI	CTAG	6 cut(s)	465, 629, 791, 842, 1356, 1383
BfmI	CTRYAG	1 cut(s)	1335
BfuI	GTATCC	1 cut(s)	929
BglII	AGATCT	1 cut(s)	1433
BisI	GCNGC	5 cut(s)	76, 198, 284, 376, 1378
BlsI	GCNGC	5 cut(s)	77, 199, 285, 377, 1379
BmcAI	AGTACT	2 cut(s)	112, 555
Bme1390I	CCNGG	1 cut(s)	313
Bme18I	GGWCC	1 cut(s)	745
BmeT110I	CYCGRG	2 cut(s)	846, 1001
BmgT120I	GGNCC	2 cut(s)	745, 1411
BmiI	GGNNCC	2 cut(s)	272, 489
BmrFI	CCNGG	1 cut(s)	313
BmsI	GCATC	3 cut(s)	599, 1068, 1080
BmtI	GCTAGC	1 cut(s)	845
Bpu10I	CCTNAGC	1 cut(s)	779
Bsa29I	ATCGAT	1 cut(s)	1177
BsaXI	ACNNNNNCTCC	4 cut(s)	39, 42, 69, 72
Bsc4I	CCNNNNNNNGG	4 cut(s)	129, 234, 497, 1007
Bse3DI	GCAATG	1 cut(s)	439
BseBI	CCWGG	1 cut(s)	313
BseCI	ATCGAT	1 cut(s)	1177
BseGI	GGATG	4 cut(s)	510, 533, 790, 1083
BseLI	CCNNNNNNNGG	4 cut(s)	129, 234, 497, 1007
BseMI	GCAATG	1 cut(s)	439
BseMII	CTCAG	5 cut(s)	164, 186, 321, 878, 1115
BseRI	GAGGAG	2 cut(s)	63, 304
BseSI	GKGCMC	2 cut(s)	445, 1288
BseXI	GCAGC	3 cut(s)	209, 295, 387
Bsh1236I	CGCG	4 cut(s)	75, 916, 1242, 1377
BshFI	GGCC	1 cut(s)	1413
BshNI	GGYRCC	1 cut(s)	487
BshVI	ATCGAT	1 cut(s)	1177
BsiHKAI	GWGCWC	4 cut(s)	445, 855, 897, 1288
BsiHKCI	CYCGRG	2 cut(s)	846, 1001
BslI	CCNNNNNNNGG	4 cut(s)	129, 234, 497, 1007
BsmAI	GTCTC	1 cut(s)	211
BsmI	GAATGC	1 cut(s)	817
BsnI	GGCC	1 cut(s)	1413
BsoBI	CYCGRG	2 cut(s)	846, 1001
Bsp1286I	GDGCHC	5 cut(s)	273, 445, 855, 897, 1288
Bsp143I	GATC	6 cut(s)	473, 631, 983, 1174, 1178, 1433
BspANI	GGCC	1 cut(s)	1413
BspCNI	CTCAG	5 cut(s)	163, 185, 322, 879, 1114
BspDI	ATCGAT	1 cut(s)	1177
BspFNI	CGCG	4 cut(s)	75, 916, 1242, 1377
BspLI	GGNNCC	2 cut(s)	272, 489
BspOI	GCTAGC	1 cut(s)	845
BspPI	GGATC	1 cut(s)	978
BspQI	GCTCTTC	1 cut(s)	573
BspT107I	GGYRCC	1 cut(s)	487
BsrDI	GCAATG	1 cut(s)	439
BssMI	GATC	6 cut(s)	473, 631, 983, 1174, 1178, 1433
Bst2UI	CCWGG	1 cut(s)	313
Bst4CI	ACNGT	1 cut(s)	1016
Bst6I	CTCTTC	1 cut(s)	573
BstC8I	GCNNGC	9 cut(s)	262, 281, 343, 363, 373, 380, 830, 843, 1244
BstDEI	CTNAG	6 cut(s)	150, 172, 330, 779, 887, 1101
BstF5I	GGATG	4 cut(s)	510, 533, 790, 1083
BstFNI	CGCG	4 cut(s)	75, 916, 1242, 1377
BstHHI	GCGC	2 cut(s)	916, 1377
BstKTI	GATC	6 cut(s)	476, 634, 986, 1177, 1181, 1436
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	6 cut(s)	473, 631, 983, 1174, 1178, 1433
BstMWI	GCNNNNNNNGC	4 cut(s)	261, 838, 1283, 1372
BstNI	CCWGG	1 cut(s)	313
BstNSI	RCATGY	2 cut(s)	713, 1298
BstSCI	CCNGG	1 cut(s)	311
BstSFI	CTRYAG	1 cut(s)	1335
BstSLI	GKGCMC	2 cut(s)	445, 1288
BstUI	CGCG	4 cut(s)	75, 916, 1242, 1377
BstV1I	GCAGC	3 cut(s)	209, 295, 387
BstX2I	RGATCY	1 cut(s)	1433
BstXI	CCANNNNNNTGG	2 cut(s)	126, 319
BstYI	RGATCY	1 cut(s)	1433
Bsu15I	ATCGAT	1 cut(s)	1177
BsuI	GTATCC	1 cut(s)	929
BsuRI	GGCC	1 cut(s)	1413
BsuTUI	ATCGAT	1 cut(s)	1177
BtgZI	GCGATG	1 cut(s)	954
BtsCI	GGATG	4 cut(s)	510, 533, 790, 1083
BtsIMutI	CAGTG	3 cut(s)	401, 614, 1021
Cac8I	GCNNGC	9 cut(s)	262, 281, 343, 363, 373, 380, 830, 843, 1244
CaiI	CAGNNNCTG	1 cut(s)	209
CfoI	GCGC	2 cut(s)	916, 1377
Cfr13I	GGNCC	2 cut(s)	745, 1411
ClaI	ATCGAT	1 cut(s)	1177
CseI	GACGC	1 cut(s)	189
Csp6I	GTAC	2 cut(s)	111, 554
CviAII	CATG	7 cut(s)	641, 665, 710, 1062, 1112, 1295, 1461
CviQI	GTAC	2 cut(s)	111, 554
DdeI	CTNAG	6 cut(s)	150, 172, 330, 779, 887, 1101
DpnI	GATC	6 cut(s)	475, 633, 985, 1176, 1180, 1435
DpnII	GATC	6 cut(s)	473, 631, 983, 1174, 1178, 1433
DraI	TTTAAA	1 cut(s)	529
Eam1104I	CTCTTC	1 cut(s)	573
EarI	CTCTTC	1 cut(s)	573
Ecl136II	GAGCTC	2 cut(s)	853, 895
Eco24I	GRGCYC	3 cut(s)	273, 855, 897
Eco47I	GGWCC	1 cut(s)	745
Eco53kI	GAGCTC	2 cut(s)	853, 895
Eco57I	CTGAAG	4 cut(s)	1010, 1116, 1151, 1244
Eco88I	CYCGRG	2 cut(s)	846, 1001
EcoICRI	GAGCTC	2 cut(s)	853, 895
EcoRII	CCWGG	1 cut(s)	311
EcoT38I	GRGCYC	3 cut(s)	273, 855, 897
FaeI	CATG	7 cut(s)	644, 668, 713, 1065, 1115, 1298, 1464
FalI	AAGNNNNNCTT	2 cut(s)	1050, 1082
FatI	CATG	7 cut(s)	640, 664, 709, 1061, 1111, 1294, 1460
FauI	CCCGC	1 cut(s)	1235
FblI	GTMKAC	1 cut(s)	1338
Fnu4HI	GCNGC	5 cut(s)	76, 198, 284, 376, 1378
FokI	GGATG	4 cut(s)	517, 520, 797, 1090
FriOI	GRGCYC	3 cut(s)	273, 855, 897
Fsp4HI	GCNGC	5 cut(s)	76, 198, 284, 376, 1378
FspBI	CTAG	6 cut(s)	465, 629, 791, 842, 1356, 1383
GlaI	GCGC	2 cut(s)	915, 1376
GluI	GCNGC	5 cut(s)	76, 198, 284, 376, 1378
HaeIII	GGCC	1 cut(s)	1413
HgaI	GACGC	1 cut(s)	189
HhaI	GCGC	2 cut(s)	916, 1377
Hin1II	CATG	7 cut(s)	644, 668, 713, 1065, 1115, 1298, 1464
Hin6I	GCGC	2 cut(s)	914, 1375
HinP1I	GCGC	2 cut(s)	914, 1375
HindIII	AAGCTT	1 cut(s)	762
HphI	GGTGA	2 cut(s)	97, 809
Hpy166II	GTNNAC	4 cut(s)	443, 1135, 1286, 1339
Hpy188I	TCNGA	8 cut(s)	153, 175, 679, 823, 888, 1033, 1057, 1104
Hpy188III	TCNNGA	5 cut(s)	353, 568, 575, 848, 1383
Hpy8I	GTNNAC	4 cut(s)	443, 1135, 1286, 1339
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	5 cut(s)	495, 788, 1000, 1219, 1415
HpyCH4III	ACNGT	1 cut(s)	1016
HpyCH4IV	ACGT	1 cut(s)	1341
HpyCH4V	TGCA	9 cut(s)	108, 371, 443, 644, 664, 832, 1081, 1286, 1406
HpyF10VI	GCNNNNNNNGC	4 cut(s)	261, 838, 1283, 1372
HpyF3I	CTNAG	6 cut(s)	150, 172, 330, 779, 887, 1101
HpySE526I	ACGT	1 cut(s)	1341
Hsp92II	CATG	7 cut(s)	644, 668, 713, 1065, 1115, 1298, 1464
HspAI	GCGC	2 cut(s)	914, 1375
Kzo9I	GATC	6 cut(s)	473, 631, 983, 1174, 1178, 1433
LguI	GCTCTTC	1 cut(s)	573
LmnI	GCTCC	3 cut(s)	276, 858, 1219
Lsp1109I	GCAGC	3 cut(s)	209, 295, 387
LweI	GCATC	3 cut(s)	599, 1068, 1080
MaeI	CTAG	6 cut(s)	465, 629, 791, 842, 1356, 1383
MaeII	ACGT	1 cut(s)	1341
MaeIII	GTNAC	5 cut(s)	155, 712, 1010, 1019, 1106
MalI	GATC	6 cut(s)	475, 633, 985, 1176, 1180, 1435
MboI	GATC	6 cut(s)	473, 631, 983, 1174, 1178, 1433
MboII	GAAGA	6 cut(s)	590, 748, 861, 1099, 1157, 1319
MfeI	CAATTG	2 cut(s)	773, 1128
MflI	RGATCY	1 cut(s)	1433
MhlI	GDGCHC	5 cut(s)	273, 445, 855, 897, 1288
MluCI	AATT	9 cut(s)	176, 542, 620, 648, 773, 1041, 1128, 1231, 1438
MlyI	GAGTC	4 cut(s)	163, 343, 565, 1265
MroXI	GAANNNNTTC	2 cut(s)	817, 1161
MseI	TTAA	4 cut(s)	60, 528, 651, 1040
MslI	CAYNNNNRTG	1 cut(s)	639
MspA1I	CMGCKG	1 cut(s)	286
MspR9I	CCNGG	1 cut(s)	313
MunI	CAATTG	2 cut(s)	773, 1128
Mva1269I	GAATGC	1 cut(s)	817
MvaI	CCWGG	1 cut(s)	313
MvnI	CGCG	4 cut(s)	75, 916, 1242, 1377
MwoI	GCNNNNNNNGC	4 cut(s)	261, 838, 1283, 1372
NdeII	GATC	6 cut(s)	473, 631, 983, 1174, 1178, 1433
NheI	GCTAGC	1 cut(s)	841
NlaIII	CATG	7 cut(s)	644, 668, 713, 1065, 1115, 1298, 1464
NlaIV	GGNNCC	2 cut(s)	272, 489
NmuCI	GTSAC	3 cut(s)	155, 1010, 1106
NspI	RCATGY	2 cut(s)	713, 1298
PaeR7I	CTCGAG	1 cut(s)	846
PciI	ACATGT	1 cut(s)	1294
PciSI	GCTCTTC	1 cut(s)	573
PctI	GAATGC	1 cut(s)	817
PdmI	GAANNNNTTC	2 cut(s)	817, 1161
PfeI	GAWTC	6 cut(s)	512, 674, 756, 1270, 1310, 1325
PkrI	GCNGC	5 cut(s)	77, 199, 285, 377, 1379
PleI	GAGTC	4 cut(s)	162, 342, 565, 1264
PpsI	GAGTC	4 cut(s)	162, 342, 565, 1264
PscI	ACATGT	1 cut(s)	1294
PshBI	ATTAAT	1 cut(s)	1040
PsiI	TTATAA	1 cut(s)	495
Psp124BI	GAGCTC	2 cut(s)	855, 897
Psp6I	CCWGG	1 cut(s)	311
PspGI	CCWGG	1 cut(s)	311
PspN4I	GGNNCC	2 cut(s)	272, 489
PspPI	GGNCC	2 cut(s)	745, 1411
PstNI	CAGNNNCTG	1 cut(s)	209
PsuI	RGATCY	1 cut(s)	1433
RsaI	GTAC	2 cut(s)	112, 555
RsaNI	GTAC	2 cut(s)	111, 554
RseI	CAYNNNNRTG	1 cut(s)	639
SacI	GAGCTC	2 cut(s)	855, 897
SapI	GCTCTTC	1 cut(s)	573
SaqAI	TTAA	4 cut(s)	60, 528, 651, 1040
SatI	GCNGC	5 cut(s)	76, 198, 284, 376, 1378
Sau3AI	GATC	6 cut(s)	473, 631, 983, 1174, 1178, 1433
Sau96I	GGNCC	2 cut(s)	745, 1411
ScaI	AGTACT	2 cut(s)	112, 555
SchI	GAGTC	4 cut(s)	163, 343, 565, 1265
ScrFI	CCNGG	1 cut(s)	313
SduI	GDGCHC	5 cut(s)	273, 445, 855, 897, 1288
SfaNI	GCATC	3 cut(s)	599, 1068, 1080
SfcI	CTRYAG	1 cut(s)	1335
Sfr274I	CTCGAG	1 cut(s)	846
SinI	GGWCC	1 cut(s)	745
SlaI	CTCGAG	1 cut(s)	846
SmiMI	CAYNNNNRTG	1 cut(s)	639
SmlI	CTYRAG	1 cut(s)	846
SmoI	CTYRAG	1 cut(s)	846
Sse9I	AATT	9 cut(s)	176, 542, 620, 648, 773, 1041, 1128, 1231, 1438
SspMI	CTAG	6 cut(s)	465, 629, 791, 842, 1356, 1383
SstI	GAGCTC	2 cut(s)	855, 897
StyD4I	CCNGG	1 cut(s)	311
TaaI	ACNGT	1 cut(s)	1016
TaiI	ACGT	1 cut(s)	1344
TaqI	TCGA	5 cut(s)	138, 243, 847, 897, 1177
TaqII	GACCGA	1 cut(s)	768
TasI	AATT	9 cut(s)	176, 542, 620, 648, 773, 1041, 1128, 1231, 1438
TatI	WGTACW	2 cut(s)	110, 553
TauI	GCSGC	2 cut(s)	78, 1380
TfiI	GAWTC	6 cut(s)	512, 674, 756, 1270, 1310, 1325
Tru1I	TTAA	4 cut(s)	60, 528, 651, 1040
Tru9I	TTAA	4 cut(s)	60, 528, 651, 1040
TscAI	CASTG	3 cut(s)	408, 621, 1021
TseFI	GTSAC	3 cut(s)	155, 1010, 1106
TseI	GCWGC	3 cut(s)	197, 283, 375
Tsp45I	GTSAC	3 cut(s)	155, 1010, 1106
TspDTI	ATGAA	7 cut(s)	719, 878, 984, 1086, 1100, 1320, 1434
TspGWI	ACGGA	3 cut(s)	220, 1090, 1432
TspRI	CASTG	3 cut(s)	408, 621, 1021
VneI	GTGCAC	2 cut(s)	441, 1284
VpaK11BI	GGWCC	1 cut(s)	745
VspI	ATTAAT	1 cut(s)	1040
XapI	RAATTY	1 cut(s)	176
XbaI	TCTAGA	1 cut(s)	1382
XceI	RCATGY	2 cut(s)	713, 1298
XcmI	CCANNNNNNNNNTGG	2 cut(s)	123, 319
XhoI	CTCGAG	1 cut(s)	846
XmiI	GTMKAC	1 cut(s)	1338
XmnI	GAANNNNTTC	2 cut(s)	817, 1161
XspI	CTAG	6 cut(s)	465, 629, 791, 842, 1356, 1383
ZrmI	AGTACT	2 cut(s)	112, 555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.