Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001902

Physical Location & Seq

Genomic Coordinates Reverse (-)

37216302 .. 37221364

Gene Structure 5063 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0262200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGACAATGGTGGCACACGTGGGACTCATATCGTTCTCTTCTTCCTTACCTTCTCTGCCTCGTCTTCCTCGTCTGTCCTCCACAAAGCACCGACCTTTAATCATGGCGGCAATGAGTGATGATCCGGTTCGTAAATGGATTCTCACCGAAGGAAATGCAACAGAGATAATAAGAATTAGTCCTATAGGCGGTGGTTGCATCAATCGTGCTAGTCGTTATGACACTGATGCTGGTTCTTTCTTTGTTAAAACAAACAGGAGCATTGGACCATCTATGTTTGAGGGAGAGGCTCTTGGTTTAGATGCCATGTTTAAAACCCGATCAATTCGTGTTCCTAAGCCATTCAAGGTTGGCCCTCTACCTACTGGTGGTTCTTACATCATTATGGAGTTTATTGACTTTGGTTTATCCAGAGGTAATCAGTCTGATCTAGGCAGGAAGCTTGCTGAGATGCATAAGACTGGAAAATCTGAGAAAGGTTTTGGTTTTGAAGGTAACAATACAATAGGCAGCACTCCGCAGATAAACACTTGGTCATCAGATTGGATTCAGTTTTATGGCGAGCATAGACTGGGTTACCAGTTGCAGCTGGCCGTGGACCGATATGGTGATAGTACCATTTATGAAAAAGGACAAAGATTAGTGAAGAGTATGGGACCGCTCTTCGATAATATAGTGATTGAGCCATGCCTGTTACATGGGGACTTATGGAGCGGAAATATCAGCTCTGACAAGAAAGGAGAACCAGTTATACTTGACCCGGCATGTTACTATGGACATAATGAGGCCGAATTTGGAATGTCGTGGTGTGCTGGTTTTGGTGGATCTTTCTACAGTTCCTATTTTGAGGTGATGCCCAAGCAACCAGGGTTTGAGAAAAGGAAAGATCTCTACATGTTGTATCATTACTTGAATCATTATAACCTCTTCGGTTCTGGTTATCGTTCCTCTGCAATGTCCATAATAGATGACTATCTCCGGATGTTAAAAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016307 GO:0016308 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0030258 GO:0044237 GO:0044238 GO:0044255 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04011 ko04070 ko04072 ko04139 ko04144 ko04666 ko04810 ko05231 map00562 map01100 map04011 map04070 map04072 map04139 map04144 map04666 map04810 map05231

Pfam Domains

Protein Families

PIP5K

Protein Analysis

331

Amino Acids

36.97

Weight (kDa)

8.51

Isoelectric Point (pI)

49.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fructosamin_kin	PF03881	44 - 327	2.5e-98	Fructosamine kinase
APH	PF01636	59 - 269	5.2e-07	Phosphotransferase enzyme family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46260 AT3G61600 AT3G61600
fragaria_vesca	FvH4_5g03751 FvH4_5g03751 FvH4_5g03751 FvH4_5g03751 FvH4_5g03751 FvH4_7g15752 FvH4_7g15752
malus_domestica	MD01G1074300.v1.1 MD07G1143200.v1.1 MD14G1117700.v1.1
prunus_persica	Prupe.2G182300_v2.0.a1 Prupe.2G182300_v2.0.a1 Prupe.5G112100_v2.0.a1 Prupe.5G112100_v2.0.a1 Prupe.5G112100_v2.0.a1
pyrus_communis	pycom06g09390 pycom07g14190
rosa_chinensis	RchiOBHm_Chr1g0358521 RchiOBHm_Chr7g0195841
rosa_laevigata	RLG00000004083 RLG00000027955
rosa_multiflora	Rmu_co8444369.1_g000001 Rmu_sc0001609.1_g000004 Rmu_sc0004016.1_g000020
rosa_roxburghii	Rroxscaffold_3G00260050 Rroxscaffold_4G00297840
rosa_rugosa	Rorug01G0262200 Rorug01G0262300 Rorug07G0026800 Rorug07G0026900 Rorug07G0027000 Rorug07G0027000 Rorug07G0027100
rosa_samantha	Rh1AG276900 Rh1BG243300 Rh1CG260500 Rh1DG271600 Rh7AG154600 Rh7BG156400 Rh7CG160100 Rh7DG155600
rosa_wichuraiana	Rw1G024620 Rw7G013210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	921
AccBSI	CCGCTC	2 cut(s)	661, 714
AccIII	TCCGGA	1 cut(s)	978
AciI	CCGC	5 cut(s)	107, 189, 518, 659, 714
AclWI	GGATC	2 cut(s)	116, 832
AcoI	YGGCCR	1 cut(s)	591
AcsI	RAATTY	1 cut(s)	791
AcvI	CACGTG	1 cut(s)	19
AfaI	GTAC	1 cut(s)	616
AfiI	CCNNNNNNNGG	2 cut(s)	188, 368
AflIII	ACRYGT	2 cut(s)	16, 894
AgsI	TTSAA	3 cut(s)	346, 491, 913
AjnI	CCWGG	1 cut(s)	865
AluBI	AGCT	4 cut(s)	442, 589, 726, 992
AluI	AGCT	4 cut(s)	442, 589, 726, 992
AlwI	GGATC	2 cut(s)	116, 832
Aor13HI	TCCGGA	1 cut(s)	978
AoxI	GGCC	3 cut(s)	352, 591, 786
ApeKI	GCWGC	2 cut(s)	510, 586
ApoI	RAATTY	1 cut(s)	791
AspS9I	GGNCC	4 cut(s)	266, 353, 598, 656
AsuC2I	CCSGG	1 cut(s)	761
AsuHPI	GGTGA	3 cut(s)	136, 620, 862
AvaII	GGWCC	3 cut(s)	266, 598, 656
BbrPI	CACGTG	1 cut(s)	19
BbsI	GAAGAC	1 cut(s)	56
BbvI	GCAGC	2 cut(s)	522, 598
BccI	CCATC	1 cut(s)	277
BceAI	ACGGC	1 cut(s)	578
BcgI	CGANNNNNNTGC	2 cut(s)	137, 171
BciT130I	CCWGG	1 cut(s)	867
BcnI	CCSGG	1 cut(s)	761
BfaI	CTAG	2 cut(s)	210, 431
BfmI	CTRYAG	2 cut(s)	183, 832
BglII	AGATCT	1 cut(s)	886
BisI	GCNGC	3 cut(s)	108, 511, 587
BlsI	GCNGC	3 cut(s)	109, 512, 588
Bme1390I	CCNGG	2 cut(s)	761, 867
Bme18I	GGWCC	3 cut(s)	266, 598, 656
BmgT120I	GGNCC	4 cut(s)	266, 353, 598, 656
BmiI	GGNNCC	1 cut(s)	657
BmrFI	CCNGG	2 cut(s)	761, 867
BmrI	ACTGGG	1 cut(s)	581
BmsI	GCATC	5 cut(s)	207, 217, 292, 441, 843
BmuI	ACTGGG	1 cut(s)	581
BpiI	GAAGAC	1 cut(s)	56
Bpu10I	CCTNAGC	1 cut(s)	336
BpuMI	CCSGG	1 cut(s)	761
BsaAI	YACGTR	1 cut(s)	19
BsaBI	GATNNNNATC	1 cut(s)	972
BsaJI	CCNNGG	2 cut(s)	594, 866
BsaWI	WCCGGW	2 cut(s)	124, 978
BsaXI	ACNNNNNCTCC	2 cut(s)	732, 762
Bsc4I	CCNNNNNNNGG	2 cut(s)	188, 368
Bse1I	ACTGG	5 cut(s)	370, 466, 576, 580, 746
Bse3DI	GCAATG	2 cut(s)	117, 960
Bse8I	GATNNNNATC	1 cut(s)	972
BseAI	TCCGGA	1 cut(s)	978
BseBI	CCWGG	1 cut(s)	867
BseDI	CCNNGG	2 cut(s)	594, 866
BseGI	GGATG	1 cut(s)	987
BseJI	GATNNNNATC	1 cut(s)	972
BseLI	CCNNNNNNNGG	2 cut(s)	188, 368
BseMI	GCAATG	2 cut(s)	117, 960
BseMII	CTCAG	2 cut(s)	438, 462
BseNI	ACTGG	5 cut(s)	370, 466, 576, 580, 746
BseXI	GCAGC	2 cut(s)	522, 598
BshFI	GGCC	3 cut(s)	354, 593, 788
BsiSI	CCGG	3 cut(s)	125, 761, 979
BslFI	GGGAC	3 cut(s)	36, 669, 716
BslI	CCNNNNNNNGG	2 cut(s)	188, 368
BsmFI	GGGAC	3 cut(s)	36, 669, 716
BsnI	GGCC	3 cut(s)	354, 593, 788
Bsp13I	TCCGGA	1 cut(s)	978
Bsp143I	GATC	5 cut(s)	121, 320, 427, 824, 886
BspACI	CCGC	5 cut(s)	107, 189, 518, 659, 714
BspANI	GGCC	3 cut(s)	354, 593, 788
BspCNI	CTCAG	2 cut(s)	439, 463
BspEI	TCCGGA	1 cut(s)	978
BspLI	GGNNCC	1 cut(s)	657
BspPI	GGATC	2 cut(s)	116, 832
BspQI	GCTCTTC	1 cut(s)	668
BsrBI	CCGCTC	2 cut(s)	661, 714
BsrDI	GCAATG	2 cut(s)	117, 960
BsrI	ACTGG	5 cut(s)	370, 466, 576, 580, 746
BssECI	CCNNGG	2 cut(s)	594, 866
BssMI	GATC	5 cut(s)	121, 320, 427, 824, 886
Bst2UI	CCWGG	1 cut(s)	867
Bst4CI	ACNGT	1 cut(s)	836
Bst6I	CTCTTC	4 cut(s)	43, 641, 668, 932
BstBAI	YACGTR	1 cut(s)	19
BstC8I	GCNNGC	3 cut(s)	444, 563, 591
BstDEI	CTNAG	4 cut(s)	336, 447, 471, 993
BstDSI	CCRYGG	1 cut(s)	594
BstEII	GGTNACC	1 cut(s)	575
BstF5I	GGATG	1 cut(s)	987
BstKTI	GATC	5 cut(s)	124, 323, 430, 827, 889
BstMBI	GATC	5 cut(s)	121, 320, 427, 824, 886
BstMWI	GCNNNNNNNGC	1 cut(s)	195
BstNI	CCWGG	1 cut(s)	867
BstNSI	RCATGY	2 cut(s)	768, 898
BstPI	GGTNACC	1 cut(s)	575
BstSCI	CCNGG	2 cut(s)	759, 865
BstSFI	CTRYAG	2 cut(s)	183, 832
BstV1I	GCAGC	2 cut(s)	522, 598
BstV2I	GAAGAC	1 cut(s)	56
BstX2I	RGATCY	2 cut(s)	824, 886
BstYI	RGATCY	2 cut(s)	824, 886
BsuRI	GGCC	3 cut(s)	354, 593, 788
BtgI	CCRYGG	1 cut(s)	594
BtsCI	GGATG	1 cut(s)	987
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	3 cut(s)	444, 563, 591
Cfr13I	GGNCC	4 cut(s)	266, 353, 598, 656
Csp6I	GTAC	1 cut(s)	615
CviAII	CATG	6 cut(s)	103, 307, 687, 698, 765, 895
CviQI	GTAC	1 cut(s)	615
DdeI	CTNAG	4 cut(s)	336, 447, 471, 993
DpnI	GATC	5 cut(s)	123, 322, 429, 826, 888
DpnII	GATC	5 cut(s)	121, 320, 427, 824, 886
DraI	TTTAAA	1 cut(s)	313
EaeI	YGGCCR	1 cut(s)	591
Eam1104I	CTCTTC	4 cut(s)	43, 641, 668, 932
EarI	CTCTTC	4 cut(s)	43, 641, 668, 932
Eco47I	GGWCC	3 cut(s)	266, 598, 656
Eco72I	CACGTG	1 cut(s)	19
Eco91I	GGTNACC	1 cut(s)	575
EcoO65I	GGTNACC	1 cut(s)	575
EcoRII	CCWGG	1 cut(s)	865
EcoT22I	ATGCAT	1 cut(s)	456
FaeI	CATG	6 cut(s)	106, 310, 690, 701, 768, 898
FaqI	GGGAC	3 cut(s)	36, 669, 716
FatI	CATG	6 cut(s)	102, 306, 686, 697, 764, 894
Fnu4HI	GCNGC	3 cut(s)	108, 511, 587
Fsp4HI	GCNGC	3 cut(s)	108, 511, 587
FspBI	CTAG	2 cut(s)	210, 431
GluI	GCNGC	3 cut(s)	108, 511, 587
HaeIII	GGCC	3 cut(s)	354, 593, 788
HapII	CCGG	3 cut(s)	125, 761, 979
Hin1II	CATG	6 cut(s)	106, 310, 690, 701, 768, 898
HindIII	AAGCTT	2 cut(s)	440, 990
HinfI	GANTC	4 cut(s)	24, 139, 547, 913
HpaII	CCGG	3 cut(s)	125, 761, 979
HphI	GGTGA	3 cut(s)	136, 620, 862
Hpy166II	GTNNAC	1 cut(s)	598
Hpy188I	TCNGA	4 cut(s)	427, 472, 541, 730
Hpy188III	TCNNGA	2 cut(s)	411, 979
Hpy8I	GTNNAC	1 cut(s)	598
HpyAV	CCTTC	3 cut(s)	60, 143, 485
HpyCH4III	ACNGT	1 cut(s)	836
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	5 cut(s)	158, 198, 454, 586, 953
HpyF10VI	GCNNNNNNNGC	1 cut(s)	195
HpyF3I	CTNAG	4 cut(s)	336, 447, 471, 993
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	6 cut(s)	106, 310, 690, 701, 768, 898
Kpn2I	TCCGGA	1 cut(s)	978
Kzo9I	GATC	5 cut(s)	121, 320, 427, 824, 886
LguI	GCTCTTC	1 cut(s)	668
LmnI	GCTCC	2 cut(s)	258, 711
Lsp1109I	GCAGC	2 cut(s)	522, 598
LweI	GCATC	5 cut(s)	207, 217, 292, 441, 843
MaeI	CTAG	2 cut(s)	210, 431
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	4 cut(s)	494, 575, 693, 767
MalI	GATC	5 cut(s)	123, 322, 429, 826, 888
MbiI	CCGCTC	2 cut(s)	661, 714
MboI	GATC	5 cut(s)	121, 320, 427, 824, 886
MboII	GAAGA	6 cut(s)	30, 33, 56, 655, 658, 919
MflI	RGATCY	2 cut(s)	824, 886
MluCI	AATT	3 cut(s)	174, 324, 791
MlyI	GAGTC	1 cut(s)	18
Mph1103I	ATGCAT	1 cut(s)	456
MroI	TCCGGA	1 cut(s)	978
MseI	TTAA	4 cut(s)	98, 246, 312, 986
MslI	CAYNNNNRTG	1 cut(s)	383
MspA1I	CMGCKG	1 cut(s)	589
MspI	CCGG	3 cut(s)	125, 761, 979
MspR9I	CCNGG	2 cut(s)	761, 867
MvaI	CCWGG	1 cut(s)	867
MwoI	GCNNNNNNNGC	1 cut(s)	195
NciI	CCSGG	1 cut(s)	761
NdeII	GATC	5 cut(s)	121, 320, 427, 824, 886
NlaIII	CATG	6 cut(s)	106, 310, 690, 701, 768, 898
NlaIV	GGNNCC	1 cut(s)	657
NsiI	ATGCAT	1 cut(s)	456
NspI	RCATGY	2 cut(s)	768, 898
PciI	ACATGT	1 cut(s)	894
PciSI	GCTCTTC	1 cut(s)	668
PcsI	WCGNNNNNNNCGW	2 cut(s)	67, 211
PfeI	GAWTC	3 cut(s)	139, 547, 913
PkrI	GCNGC	3 cut(s)	109, 512, 588
PleI	GAGTC	1 cut(s)	18
PmaCI	CACGTG	1 cut(s)	19
PmlI	CACGTG	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	18
Ppu21I	YACGTR	1 cut(s)	19
PscI	ACATGT	1 cut(s)	894
PsiI	TTATAA	1 cut(s)	921
Psp6I	CCWGG	1 cut(s)	865
PspCI	CACGTG	1 cut(s)	19
PspEI	GGTNACC	1 cut(s)	575
PspGI	CCWGG	1 cut(s)	865
PspN4I	GGNNCC	1 cut(s)	657
PspPI	GGNCC	4 cut(s)	266, 353, 598, 656
PsrI	GAACNNNNNNTAC	2 cut(s)	735, 767
PsuI	RGATCY	2 cut(s)	824, 886
PvuII	CAGCTG	1 cut(s)	589
RsaI	GTAC	1 cut(s)	616
RsaNI	GTAC	1 cut(s)	615
RseI	CAYNNNNRTG	1 cut(s)	383
SapI	GCTCTTC	1 cut(s)	668
SaqAI	TTAA	4 cut(s)	98, 246, 312, 986
SatI	GCNGC	3 cut(s)	108, 511, 587
Sau3AI	GATC	5 cut(s)	121, 320, 427, 824, 886
Sau96I	GGNCC	4 cut(s)	266, 353, 598, 656
SchI	GAGTC	1 cut(s)	18
ScrFI	CCNGG	2 cut(s)	761, 867
SfaNI	GCATC	5 cut(s)	207, 217, 292, 441, 843
SfcI	CTRYAG	2 cut(s)	183, 832
SinI	GGWCC	3 cut(s)	266, 598, 656
SmiMI	CAYNNNNRTG	1 cut(s)	383
Sse9I	AATT	3 cut(s)	174, 324, 791
SsiI	CCGC	5 cut(s)	107, 189, 518, 659, 714
SspMI	CTAG	2 cut(s)	210, 431
StyD4I	CCNGG	2 cut(s)	759, 865
TaaI	ACNGT	1 cut(s)	836
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	1 cut(s)	666
TaqII	GACCGA	1 cut(s)	615
TasI	AATT	3 cut(s)	174, 324, 791
TauI	GCSGC	1 cut(s)	110
TfiI	GAWTC	3 cut(s)	139, 547, 913
Tru1I	TTAA	4 cut(s)	98, 246, 312, 986
Tru9I	TTAA	4 cut(s)	98, 246, 312, 986
TscAI	CASTG	1 cut(s)	229
TseI	GCWGC	2 cut(s)	510, 586
TspDTI	ATGAA	1 cut(s)	639
TspRI	CASTG	1 cut(s)	229
VpaK11BI	GGWCC	3 cut(s)	266, 598, 656
XapI	RAATTY	1 cut(s)	791
XceI	RCATGY	2 cut(s)	768, 898
XspI	CTAG	2 cut(s)	210, 431
Zsp2I	ATGCAT	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.