FvH4_5g03751

BTB POZ domain-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
2220290 .. 2224167
3878 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g03751.t2

Sequence Viewer

Length: 1632 bp
ATGACGGAAGCCAAGGTCGACCACCCGATCACCGTCCCGGAGACACCGCCGTCCCCCGAACTGGACTTCACCTTCGCCTTCAACGACCCCAATTTCTCCGATCGGGTTCTCAGGATCGAAATCCTCCCCGACATTCCGGTTTCCCAATCGGACGTTGAGGCCTACGTCAGCAACTCCGATTGGGGGCATAATAGAAAGAGACGCAGGGCCGAGACTGAGGACATTGTTGTGCAATGTGAGGAGCAGGTCTTACATTGTAACATGCTTGATACAGAGGATTTTGTGGTATGTGAAAATCAAGATGAGGATGCTATGGCAACTACCGAGTCGCCTTCAGTTTCACTCTGCAATTGTGTCAATGTTAAAGCTGCTGGTATCTGGATCACGGATTGCTCCACAGTTCTGAGGGTTGAAACCATACATATAAGTTCTCCGATATTGGCTGCAAAGAGTCCCTTTTTTTACAAGTTGTTCTCGGATGGGATGAAACAGTCAGGGTTAGAGGAACGACAAGCAACTCTAAGAATTCATGAATCAGAAGAAGCGGCCCTCATGGACCTTCTTAATTTCATTTATGGTAATACATTGTCCACGACAACAGCACCTTCATTGTTGGATGTGCTAAAGGCTGCTGACAAATTTGAGGTTGAATCTTGCATGAGATATTGCAGTAGGTTATTGGGACAATTGCCTATGACTCGTGATTCTGCCTTGCTTTATTTGGACCTTCCATCTAGTGTTCTGATGGTTGATGCAGTTCAATCACTCACAGATACAGCAAAAAAGTTCCTTGCTACCCGCTATAGAGAACTAACCAAGTTTGTGGATGAGGTGTTGTACTTGCCCCTTGCTGGTATCGAGGCTGTACTGTCTAGTGATGATCTCCATGTTGCATCAGAGGATGCTATTTTTGATCTGGTTCTTAAGTGGGCACGGTTGCATTACCGGAATGCTGAAGATCGACAAGAAGTCATTGCTTCGCGCCTTGCTCGCCTCATTCGTTTTCCTTTCATGTCCTGTCGAAAGCTTAGGAAGGTTCTAAGCTGCAATGATTTTGATCCTCAACTGTCATCAAAGATAGTGCTTGAGGCTTTGTTTTACAAGTCTGAGACACCATACAGGCAGCGGTTACTTGCTGTGGAGAATGCTAACGCCACGTATCGTGGCTTTGTGGATCGTTCCTACAAGTACAGGCCAGTGAAAATAGTGGAATTTGAACTACCCCATCCACAGTGTATTGTGTACCTAGATCTGAAGCGCGAAGAGTGTGCACGCTTGTTTCCAGCTGGTCGGGTGTACTCACAGGCTTTTAACCTGGGTGGGCAGGGCTTTTTCTTGTCTGCCCATTGCAACATGGACCAACAGAACTCCTTTCAGTGCTTGGGGCTGTTTTTAGGGATGCAAGAGAAGGGATCAGTTAGTTTTGTAGTTGACTATGAATTCTCAGTAAGGGTAAAGCCTGAGGAGGAGTTTCAGAGTAAACACAAAGGTACTTACACTTTCACTGGTGGGAAGGCTGTTGGGTATAGGAACTTGCTTGCTATACCCTGGACAACATTCATGGCCGATGACAGCATCTATTTCATTAATTCTGTTCTCCATCTCCAGGCTGAGCTTATCATCAGGCAATGA

Protein Analysis

544

Amino Acids

61.74

Weight (kDa)

5.19

Isoelectric Point (pI)

47.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB PF00651 134 - 232 1.8e-12 BTB/POZ domain
BTB_KLHL33 PF21536 162 - 228 9.8e-07 Kelch-like protein 33-like, BTB/POZ domain
BACK PF07707 258 - 351 8.4e-10 BTB And C-terminal Kelch
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 49
Acc36I ACCTGC 1 cut(s) 235
AccI GTMKAC 1 cut(s) 18
AccII CGCG 2 cut(s) 982, 1260
AciI CCGC 4 cut(s) 47, 545, 799, 1126
AclWI GGATC 5 cut(s) 122, 389, 1052, 1182, 1420
AcoI YGGCCR 1 cut(s) 1563
AcsI RAATTY 4 cut(s) 525, 638, 1211, 1439
AcuI CTGAAG 3 cut(s) 318, 975, 1274
AfaI GTAC 6 cut(s) 839, 867, 1190, 1244, 1298, 1492
AfiI CCNNNNNNNGG 4 cut(s) 61, 183, 851, 1606
AflII CTTAAG 1 cut(s) 923
AgsI TTSAA 5 cut(s) 82, 413, 650, 761, 1217
AhdI GACNNNNNGTC 1 cut(s) 968
AjnI CCWGG 3 cut(s) 1314, 1547, 1605
AluBI AGCT 5 cut(s) 368, 1027, 1044, 1286, 1615
AluI AGCT 5 cut(s) 368, 1027, 1044, 1286, 1615
Alw21I GWGCWC 1 cut(s) 1273
Alw26I GTCTC 4 cut(s) 35, 193, 206, 1103
Alw44I GTGCAC 1 cut(s) 1269
AlwI GGATC 5 cut(s) 122, 389, 1052, 1182, 1420
AoxI GGCC 5 cut(s) 159, 207, 546, 1193, 1563
ApaLI GTGCAC 1 cut(s) 1269
ApeKI GCWGC 5 cut(s) 368, 443, 629, 1044, 1123
ApoI RAATTY 4 cut(s) 525, 638, 1211, 1439
ArsI GACNNNNNNTTYG 2 cut(s) 56, 88
AseI ATTAAT 1 cut(s) 1587
AspLEI GCGC 2 cut(s) 984, 1260
AspS9I GGNCC 5 cut(s) 207, 547, 556, 724, 1357
AsuC2I CCSGG 1 cut(s) 38
AsuHPI GGTGA 2 cut(s) 22, 61
AvaII GGWCC 3 cut(s) 556, 724, 1357
AxyI CCTNAGG 1 cut(s) 1461
BaeGI GKGCMC 2 cut(s) 934, 1273
BauI CACGAG 1 cut(s) 699
Bbv12I GWGCWC 1 cut(s) 1273
BbvI GCAGC 5 cut(s) 355, 430, 616, 1031, 1135
BccI CCATC 5 cut(s) 473, 739, 739, 1233, 1608
BceAI ACGGC 1 cut(s) 34
BcgI CGANNNNNNTGC 2 cut(s) 1250, 1284
BciT130I CCWGG 3 cut(s) 1316, 1549, 1607
BcnI CCSGG 1 cut(s) 38
BcoDI GTCTC 4 cut(s) 35, 193, 206, 1103
BfaI CTAG 3 cut(s) 735, 873, 1247
BfmI CTRYAG 1 cut(s) 802
BfrI CTTAAG 1 cut(s) 923
BfuAI ACCTGC 1 cut(s) 235
BglII AGATCT 1 cut(s) 1249
BisI GCNGC 6 cut(s) 369, 444, 546, 630, 1045, 1124
BlpI GCTNAGC 1 cut(s) 1611
BlsI GCNGC 6 cut(s) 370, 445, 547, 631, 1046, 1125
Bme1390I CCNGG 4 cut(s) 38, 1316, 1549, 1607
Bme18I GGWCC 3 cut(s) 556, 724, 1357
BmeRI GACNNNNNGTC 1 cut(s) 968
BmgT120I GGNCC 5 cut(s) 207, 547, 556, 724, 1357
BmrFI CCNGG 4 cut(s) 38, 1316, 1549, 1607
BmsI GCATC 6 cut(s) 298, 742, 892, 902, 1389, 1584
BpmI CTGGAG 1 cut(s) 1589
Bpu10I CCTNAGC 1 cut(s) 1028
Bpu1102I GCTNAGC 1 cut(s) 1611
BpuEI CTTGAG 1 cut(s) 1106
BpuMI CCSGG 1 cut(s) 38
BsaAI YACGTR 1 cut(s) 1158
BsaBI GATNNNNATC 2 cut(s) 119, 1056
BsaJI CCNNGG 3 cut(s) 12, 1315, 1547
BsaWI WCCGGW 2 cut(s) 136, 945
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 183, 851, 1606
Bse1I ACTGG 3 cut(s) 66, 1196, 1510
Bse21I CCTNAGG 1 cut(s) 1461
Bse3DI GCAATG 4 cut(s) 239, 972, 1054, 1345
Bse8I GATNNNNATC 2 cut(s) 119, 1056
BseBI CCWGG 3 cut(s) 1316, 1549, 1607
BseDI CCNNGG 3 cut(s) 12, 1315, 1547
BseGI GGATG 8 cut(s) 313, 484, 489, 622, 832, 907, 1225, 1404
BseJI GATNNNNATC 2 cut(s) 119, 1056
BseLI CCNNNNNNNGG 4 cut(s) 61, 183, 851, 1606
BseMI GCAATG 4 cut(s) 239, 972, 1054, 1345
BseMII CTCAG 7 cut(s) 124, 207, 395, 1098, 1452, 1458, 1602
BseNI ACTGG 3 cut(s) 66, 1196, 1510
BseRI GAGGAG 3 cut(s) 254, 1478, 1481
BseSI GKGCMC 2 cut(s) 934, 1273
BseXI GCAGC 5 cut(s) 355, 430, 616, 1031, 1135
Bsh1236I CGCG 2 cut(s) 982, 1260
Bsh1285I CGRYCG 1 cut(s) 103
BshFI GGCC 5 cut(s) 161, 209, 548, 1195, 1565
BsiEI CGRYCG 1 cut(s) 103
BsiHKAI GWGCWC 1 cut(s) 1273
BsiSI CCGG 3 cut(s) 38, 137, 946
BslFI GGGAC 4 cut(s) 20, 37, 438, 696
BslI CCNNNNNNNGG 4 cut(s) 61, 183, 851, 1606
BsmAI GTCTC 4 cut(s) 35, 193, 206, 1103
BsmBI CGTCTC 1 cut(s) 193
BsmFI GGGAC 4 cut(s) 20, 37, 438, 696
BsmI GAATGC 2 cut(s) 955, 1150
BsnI GGCC 5 cut(s) 161, 209, 548, 1195, 1565
Bsp1286I GDGCHC 2 cut(s) 934, 1273
Bsp1720I GCTNAGC 1 cut(s) 1611
BspACI CCGC 4 cut(s) 47, 545, 799, 1126
BspANI GGCC 5 cut(s) 161, 209, 548, 1195, 1565
BspCNI CTCAG 7 cut(s) 123, 208, 396, 1099, 1453, 1457, 1603
BspFNI CGCG 2 cut(s) 982, 1260
BspHI TCATGA 1 cut(s) 529
BspMI ACCTGC 1 cut(s) 235
BspPI GGATC 5 cut(s) 122, 389, 1052, 1182, 1420
BspTI CTTAAG 1 cut(s) 923
BsrDI GCAATG 4 cut(s) 239, 972, 1054, 1345
BsrI ACTGG 3 cut(s) 66, 1196, 1510
BssECI CCNNGG 3 cut(s) 12, 1315, 1547
BssSI CACGAG 1 cut(s) 699
BssT1I CCWWGG 1 cut(s) 12
Bst2BI CACGAG 1 cut(s) 699
Bst2UI CCWGG 3 cut(s) 1316, 1549, 1607
Bst4CI ACNGT 7 cut(s) 34, 400, 492, 870, 936, 1068, 1233
Bst6I CTCTTC 1 cut(s) 1257
BstAFI CTTAAG 1 cut(s) 923
BstBAI YACGTR 1 cut(s) 1158
BstC8I GCNNGC 3 cut(s) 991, 1273, 1539
BstF5I GGATG 8 cut(s) 313, 484, 489, 622, 832, 907, 1225, 1404
BstFNI CGCG 2 cut(s) 982, 1260
BstHHI GCGC 2 cut(s) 984, 1260
BstMAI GTCTC 4 cut(s) 35, 193, 206, 1103
BstMCI CGRYCG 1 cut(s) 103
BstMWI GCNNNNNNNGC 1 cut(s) 990
BstNI CCWGG 3 cut(s) 1316, 1549, 1607
BstNSI RCATGY 1 cut(s) 265
BstSCI CCNGG 4 cut(s) 36, 1314, 1547, 1605
BstSFI CTRYAG 1 cut(s) 802
BstSLI GKGCMC 2 cut(s) 934, 1273
BstUI CGCG 2 cut(s) 982, 1260
BstV1I GCAGC 5 cut(s) 355, 430, 616, 1031, 1135
BstX2I RGATCY 1 cut(s) 1249
BstXI CCANNNNNNTGG 1 cut(s) 823
BstYI RGATCY 1 cut(s) 1249
Bsu36I CCTNAGG 1 cut(s) 1461
BsuRI GGCC 5 cut(s) 161, 209, 548, 1195, 1565
BtsCI GGATG 8 cut(s) 313, 484, 489, 622, 832, 907, 1225, 1404
BtsIMutI CAGTG 4 cut(s) 1203, 1238, 1382, 1503
BveI ACCTGC 1 cut(s) 235
Cac8I GCNNGC 3 cut(s) 991, 1273, 1539
CciI TCATGA 1 cut(s) 529
CfoI GCGC 2 cut(s) 984, 1260
Cfr13I GGNCC 5 cut(s) 207, 547, 556, 724, 1357
CseI GACGC 1 cut(s) 210
Csp6I GTAC 6 cut(s) 838, 866, 1189, 1243, 1297, 1491
CviAII CATG 8 cut(s) 262, 530, 553, 658, 887, 1012, 1354, 1561
CviQI GTAC 6 cut(s) 838, 866, 1189, 1243, 1297, 1491
DrdI GACNNNNNNGTC 1 cut(s) 49
DriI GACNNNNNGTC 1 cut(s) 968
DseDI GACNNNNNNGTC 1 cut(s) 49
EaeI YGGCCR 1 cut(s) 1563
Eam1104I CTCTTC 1 cut(s) 1257
Eam1105I GACNNNNNGTC 1 cut(s) 968
EarI CTCTTC 1 cut(s) 1257
Eco130I CCWWGG 1 cut(s) 12
Eco147I AGGCCT 1 cut(s) 161
Eco47I GGWCC 3 cut(s) 556, 724, 1357
Eco57I CTGAAG 3 cut(s) 318, 975, 1274
Eco81I CCTNAGG 1 cut(s) 1461
EcoRI GAATTC 2 cut(s) 525, 1439
EcoRII CCWGG 3 cut(s) 1314, 1547, 1605
EcoT14I CCWWGG 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 12
Esp3I CGTCTC 1 cut(s) 193
FaeI CATG 8 cut(s) 265, 533, 556, 661, 890, 1015, 1357, 1564
FalI AAGNNNNNCTT 2 cut(s) 440, 472
FaqI GGGAC 4 cut(s) 20, 37, 438, 696
FatI CATG 8 cut(s) 261, 529, 552, 657, 886, 1011, 1353, 1560
FauI CCCGC 1 cut(s) 806
FblI GTMKAC 1 cut(s) 18
Fnu4HI GCNGC 6 cut(s) 369, 444, 546, 630, 1045, 1124
FokI GGATG 8 cut(s) 320, 491, 496, 629, 839, 914, 1212, 1411
Fsp4HI GCNGC 6 cut(s) 369, 444, 546, 630, 1045, 1124
FspBI CTAG 3 cut(s) 735, 873, 1247
GlaI GCGC 2 cut(s) 983, 1259
GluI GCNGC 6 cut(s) 369, 444, 546, 630, 1045, 1124
GsuI CTGGAG 1 cut(s) 1589
HaeIII GGCC 5 cut(s) 161, 209, 548, 1195, 1565
HapII CCGG 3 cut(s) 38, 137, 946
HgaI GACGC 1 cut(s) 210
HhaI GCGC 2 cut(s) 984, 1260
Hin1II CATG 8 cut(s) 265, 533, 556, 661, 890, 1015, 1357, 1564
Hin6I GCGC 2 cut(s) 982, 1258
HinP1I GCGC 2 cut(s) 982, 1258
HincII GTYRAC 2 cut(s) 19, 1432
HindII GTYRAC 2 cut(s) 19, 1432
HindIII AAGCTT 1 cut(s) 1025
HinfI GANTC 6 cut(s) 326, 451, 533, 650, 697, 704
HpaII CCGG 3 cut(s) 38, 137, 946
HphI GGTGA 2 cut(s) 22, 61
Hpy166II GTNNAC 7 cut(s) 19, 591, 1243, 1271, 1297, 1432, 1481
Hpy188III TCNNGA 5 cut(s) 112, 299, 379, 530, 701
Hpy8I GTNNAC 7 cut(s) 19, 591, 1243, 1271, 1297, 1432, 1481
HpyAV CCTTC 9 cut(s) 82, 88, 342, 569, 615, 737, 1027, 1402, 1507
HpyCH4III ACNGT 7 cut(s) 34, 400, 492, 870, 936, 1068, 1233
HpyCH4IV ACGT 3 cut(s) 153, 165, 1157
HpyF10VI GCNNNNNNNGC 1 cut(s) 990
HpySE526I ACGT 3 cut(s) 153, 165, 1157
Hsp92II CATG 8 cut(s) 265, 533, 556, 661, 890, 1015, 1357, 1564
HspAI GCGC 2 cut(s) 982, 1258
LmnI GCTCC 2 cut(s) 241, 398
Lsp1109I GCAGC 5 cut(s) 355, 430, 616, 1031, 1135
LweI GCATC 6 cut(s) 298, 742, 892, 902, 1389, 1584
MaeI CTAG 3 cut(s) 735, 873, 1247
MaeII ACGT 3 cut(s) 153, 165, 1157
MaeIII GTNAC 2 cut(s) 257, 1128
MboII GAAGA 3 cut(s) 551, 968, 1274
MfeI CAATTG 2 cut(s) 349, 686
MflI RGATCY 1 cut(s) 1249
MhlI GDGCHC 2 cut(s) 934, 1273
MluCI AATT 9 cut(s) 91, 349, 525, 565, 638, 686, 1211, 1439, 1588
MlyI GAGTC 3 cut(s) 335, 460, 691
MmeI TCCRAC 1 cut(s) 594
MseI TTAA 5 cut(s) 363, 564, 924, 1311, 1587
MslI CAYNNNNRTG 1 cut(s) 227
MspA1I CMGCKG 2 cut(s) 1126, 1286
MspCI CTTAAG 1 cut(s) 923
MspI CCGG 3 cut(s) 38, 137, 946
MspR9I CCNGG 4 cut(s) 38, 1316, 1549, 1607
MunI CAATTG 2 cut(s) 349, 686
Mva1269I GAATGC 2 cut(s) 955, 1150
MvaI CCWGG 3 cut(s) 1316, 1549, 1607
MvnI CGCG 2 cut(s) 982, 1260
MwoI GCNNNNNNNGC 1 cut(s) 990
NciI CCSGG 1 cut(s) 38
NlaIII CATG 8 cut(s) 265, 533, 556, 661, 890, 1015, 1357, 1564
NmeAIII GCCGAG 1 cut(s) 235
NspI RCATGY 1 cut(s) 265
PagI TCATGA 1 cut(s) 529
PceI AGGCCT 1 cut(s) 161
PcsI WCGNNNNNNNCGW 2 cut(s) 81, 997
PctI GAATGC 2 cut(s) 955, 1150
PfeI GAWTC 3 cut(s) 533, 650, 704
PfoI TCCNGGA 1 cut(s) 36
PkrI GCNGC 6 cut(s) 370, 445, 547, 631, 1046, 1125
Ple19I CGATCG 1 cut(s) 103
PleI GAGTC 3 cut(s) 334, 459, 691
PpsI GAGTC 3 cut(s) 334, 459, 691
Ppu21I YACGTR 1 cut(s) 1158
PshBI ATTAAT 1 cut(s) 1587
Psp6I CCWGG 3 cut(s) 1314, 1547, 1605
PspGI CCWGG 3 cut(s) 1314, 1547, 1605
PspPI GGNCC 5 cut(s) 207, 547, 556, 724, 1357
PsuI RGATCY 1 cut(s) 1249
PvuI CGATCG 1 cut(s) 103
PvuII CAGCTG 1 cut(s) 1286
RsaI GTAC 6 cut(s) 839, 867, 1190, 1244, 1298, 1492
RsaNI GTAC 6 cut(s) 838, 866, 1189, 1243, 1297, 1491
RseI CAYNNNNRTG 1 cut(s) 227
SalI GTCGAC 1 cut(s) 17
SaqAI TTAA 5 cut(s) 363, 564, 924, 1311, 1587
SatI GCNGC 6 cut(s) 369, 444, 546, 630, 1045, 1124
Sau96I GGNCC 5 cut(s) 207, 547, 556, 724, 1357
SchI GAGTC 3 cut(s) 335, 460, 691
ScrFI CCNGG 4 cut(s) 38, 1316, 1549, 1607
SduI GDGCHC 2 cut(s) 934, 1273
SfaNI GCATC 6 cut(s) 298, 742, 892, 902, 1389, 1584
SfcI CTRYAG 1 cut(s) 802
SinI GGWCC 3 cut(s) 556, 724, 1357
SmiMI CAYNNNNRTG 1 cut(s) 227
SmlI CTYRAG 2 cut(s) 923, 1085
SmoI CTYRAG 2 cut(s) 923, 1085
Sse9I AATT 9 cut(s) 91, 349, 525, 565, 638, 686, 1211, 1439, 1588
SseBI AGGCCT 1 cut(s) 161
SsiI CCGC 4 cut(s) 47, 545, 799, 1126
SspMI CTAG 3 cut(s) 735, 873, 1247
StuI AGGCCT 1 cut(s) 161
StyD4I CCNGG 4 cut(s) 36, 1314, 1547, 1605
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 7 cut(s) 34, 400, 492, 870, 936, 1068, 1233
TaiI ACGT 3 cut(s) 156, 168, 1160
TaqI TCGA 5 cut(s) 18, 117, 858, 961, 1021
TasI AATT 9 cut(s) 91, 349, 525, 565, 638, 686, 1211, 1439, 1588
TatI WGTACW 4 cut(s) 837, 865, 1188, 1296
TauI GCSGC 1 cut(s) 548
TfiI GAWTC 3 cut(s) 533, 650, 704
Tru1I TTAA 5 cut(s) 363, 564, 924, 1311, 1587
Tru9I TTAA 5 cut(s) 363, 564, 924, 1311, 1587
TscAI CASTG 4 cut(s) 1203, 1238, 1382, 1510
TseI GCWGC 5 cut(s) 368, 443, 629, 1044, 1123
TspDTI ATGAA 9 cut(s) 500, 518, 546, 559, 597, 1000, 1452, 1549, 1573
TspGWI ACGGA 2 cut(s) 20, 401
TspRI CASTG 4 cut(s) 1203, 1238, 1382, 1510
Vha464I CTTAAG 1 cut(s) 923
VneI GTGCAC 1 cut(s) 1269
VpaK11BI GGWCC 3 cut(s) 556, 724, 1357
VspI ATTAAT 1 cut(s) 1587
XapI RAATTY 4 cut(s) 525, 638, 1211, 1439
XceI RCATGY 1 cut(s) 265
XmiI GTMKAC 1 cut(s) 18
XspI CTAG 3 cut(s) 735, 873, 1247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.