Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001902

Physical Location & Seq

Genomic Coordinates Reverse (-)

1912877 .. 1916155

Gene Structure 3279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0027100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGAGTCCGCCGAACCTCCACCTCCACCTCCTCCTCCGCCGCCGCCGCCGCAACCGGAGACAGCTTCCAGGCACCACGCCTATAGCCGGAAGCAGAAGTCTCTCGGCCTCTTGTGCTCCAATTTCATTGCGCTGTACGATCGCGAAGGCGTCACCTCCGTCGGCCTAGACGACGCCGCTGCAAGATTAGGTGTGGAGAGGCGGCGGATCTACGATATCGTTAATGTGCTTGAGAGCGTTGGGGTTCTTTCGCGAAAGGCAAAGAACCAGTATACTTGGAAAGGGTTTGGGGCAATCCCTATTGCTTTACAGGAGCTAAAGGAAGAGGGTCTGAAAGAGAACTTCAATACTTTCCATGGCAATCTCCAGGGCAATGATGATCCTAAATGTTCACAGGGTTCAGATGATGAGGAAGGTGATGAGAGTGGTCCTGCAACTGGGAGTCAGAATGAGAACCTCAGTGTCAATCCCAAATCTTCAGCAAACTCAAAAAATGATAATAGAAGGGAAAAGTCTCTGGCACTACTTACACAGAATTTTGTGAAGCTCTTCGTCTGCTCCACTGTAGAATCCATCTCCCTTGACGAAGCTGCAAGGTTATTACTTGGGGATGCACACAATGCATCTGTAATGAGAACAGCTAAAGTAAGGCGGATTTATGATATTGCAAATGTTTTGTCCTCCATGAATCTTATTGAAAAGACCCACACAGCAGATACAAGGAAGCCTGCATATAAATGGTTGGGATTAAGAGGAAAAGATGCTGCAAGTTCAGCTTCAGACGAGTCTAGAAAAAGAGCCTTTGGAACAGACATCACAAACGTCAGTTGTAAGAGGGGCAAGGTAGAATCTTCTACTGCTGGGAAATTGGAAGCTCAGAAACAAAAGCAACATGAGAGTACAGTACGGCAACGTGAGAGCATAGTACGTAAGGTTGATAGGAACAATTTAGAGGACTCAAAAGAAAATACAAAGAGCTACCAGTTTGGCCCTTTTGCTCCAGTTACTATTGCCAGAGCTGGGAATTTCAACATGAAGAAGGTTGACTGGGACAATTTGTCGTCTACTTACCGTCCCCAGTATCAGAATCAAGCTTTGAAGGAGCTGTTTTCTCATTACATGGAAGCATGGAAGTCATGGTACTCTGAAGTTGTTGAGAAGCCAATCGAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAT

Protein Analysis

391

Amino Acids

43.59

Weight (kDa)

8.8

Isoelectric Point (pI)

41.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_E2F_TDP	PF02319	31 - 95	3.7e-22	E2F/DP family winged-helix DNA-binding domain
WHD_E2F_TDP	PF02319	169 - 249	8.5e-19	E2F/DP family winged-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46260 AT3G61600 AT3G61600
fragaria_vesca	FvH4_5g03751 FvH4_5g03751 FvH4_5g03751 FvH4_5g03751 FvH4_5g03751 FvH4_7g15752 FvH4_7g15752
malus_domestica	MD01G1074300.v1.1 MD07G1143200.v1.1 MD14G1117700.v1.1
prunus_persica	Prupe.2G182300_v2.0.a1 Prupe.2G182300_v2.0.a1 Prupe.5G112100_v2.0.a1 Prupe.5G112100_v2.0.a1 Prupe.5G112100_v2.0.a1
pyrus_communis	pycom06g09390 pycom07g14190
rosa_chinensis	RchiOBHm_Chr1g0358521 RchiOBHm_Chr7g0195841
rosa_laevigata	RLG00000004083 RLG00000027955
rosa_multiflora	Rmu_co8444369.1_g000001 Rmu_sc0001609.1_g000004 Rmu_sc0004016.1_g000020
rosa_roxburghii	Rroxscaffold_3G00260050 Rroxscaffold_4G00297840
rosa_rugosa	Rorug01G0262200 Rorug01G0262300 Rorug07G0026800 Rorug07G0026900 Rorug07G0027000 Rorug07G0027000 Rorug07G0027100
rosa_samantha	Rh1AG276900 Rh1BG243300 Rh1CG260500 Rh1DG271600 Rh7AG154600 Rh7BG156400 Rh7CG160100 Rh7DG155600
rosa_wichuraiana	Rw1G024620 Rw7G013210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	72
AccI	GTMKAC	2 cut(s)	272, 1064
AccII	CGCG	2 cut(s)	144, 253
AclWI	GGATC	2 cut(s)	215, 374
AcsI	RAATTY	2 cut(s)	535, 1024
AcuI	CTGAAG	3 cut(s)	462, 762, 1167
AcyI	GRCGYC	2 cut(s)	150, 174
AfaI	GTAC	5 cut(s)	137, 901, 906, 927, 1142
AfiI	CCNNNNNNNGG	3 cut(s)	87, 437, 1020
AgsI	TTSAA	4 cut(s)	346, 698, 1030, 1099
AhdI	GACNNNNNGTC	1 cut(s)	1057
AjnI	CCWGG	2 cut(s)	68, 366
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	3 cut(s)	53, 105, 519
AlwI	GGATC	2 cut(s)	215, 374
AoxI	GGCC	3 cut(s)	106, 163, 988
ApeKI	GCWGC	3 cut(s)	179, 590, 764
ApoI	RAATTY	2 cut(s)	535, 1024
ArsI	GACNNNNNNTTYG	2 cut(s)	662, 694
Asp700I	GAANNNNTTC	1 cut(s)	548
AspLEI	GCGC	1 cut(s)	133
AspS9I	GGNCC	2 cut(s)	428, 989
AsuHPI	GGTGA	2 cut(s)	145, 428
AvaII	GGWCC	1 cut(s)	428
BanI	GGYRCC	1 cut(s)	72
BarI	GAAGNNNNNNTAC	2 cut(s)	1124, 1156
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	3 cut(s)	166, 577, 751
BccI	CCATC	1 cut(s)	581
BceAI	ACGGC	1 cut(s)	923
BcgI	CGANNNNNNTGC	2 cut(s)	161, 195
BciT130I	CCWGG	2 cut(s)	70, 368
BcoDI	GTCTC	3 cut(s)	53, 105, 519
BfaI	CTAG	2 cut(s)	167, 789
BfmI	CTRYAG	2 cut(s)	82, 564
BisI	GCNGC	9 cut(s)	41, 44, 47, 50, 177, 180, 203, 591, 765
BlsI	GCNGC	9 cut(s)	42, 45, 48, 51, 178, 181, 204, 592, 766
Bme1390I	CCNGG	2 cut(s)	70, 368
Bme18I	GGWCC	1 cut(s)	428
BmeRI	GACNNNNNGTC	1 cut(s)	1057
BmgT120I	GGNCC	2 cut(s)	428, 989
BmiI	GGNNCC	1 cut(s)	74
BmrFI	CCNGG	2 cut(s)	70, 368
BmrI	ACTGGG	3 cut(s)	447, 1057, 1072
BmsI	GCATC	3 cut(s)	601, 632, 751
BmuI	ACTGGG	3 cut(s)	447, 1057, 1072
BpmI	CTGGAG	2 cut(s)	350, 984
BpuEI	CTTGAG	1 cut(s)	251
BsaAI	YACGTR	1 cut(s)	929
BsaHI	GRCGYC	2 cut(s)	150, 174
BsaJI	CCNNGG	2 cut(s)	355, 367
BsaWI	WCCGGW	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	3 cut(s)	87, 437, 1020
Bse1I	ACTGG	6 cut(s)	268, 442, 982, 1001, 1052, 1078
Bse3DI	GCAATG	2 cut(s)	126, 379
BseBI	CCWGG	2 cut(s)	70, 368
BseDI	CCNNGG	2 cut(s)	355, 367
BseGI	GGATG	1 cut(s)	616
BseLI	CCNNNNNNNGG	3 cut(s)	87, 437, 1020
BseMI	GCAATG	2 cut(s)	126, 379
BseMII	CTCAG	2 cut(s)	472, 890
BseNI	ACTGG	6 cut(s)	268, 442, 982, 1001, 1052, 1078
BseRI	GAGGAG	2 cut(s)	21, 24
BseXI	GCAGC	3 cut(s)	166, 577, 751
BseYI	CCCAGC	2 cut(s)	860, 1019
Bsh1236I	CGCG	2 cut(s)	144, 253
Bsh1285I	CGRYCG	1 cut(s)	142
BshFI	GGCC	3 cut(s)	108, 165, 990
BshNI	GGYRCC	1 cut(s)	72
BsiEI	CGRYCG	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	119
BsiSI	CCGG	2 cut(s)	56, 88
BslFI	GGGAC	2 cut(s)	1059, 1064
BslI	CCNNNNNNNGG	3 cut(s)	87, 437, 1020
BsmAI	GTCTC	3 cut(s)	53, 105, 519
BsmFI	GGGAC	2 cut(s)	1059, 1064
BsnI	GGCC	3 cut(s)	108, 165, 990
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp143I	GATC	3 cut(s)	139, 207, 379
Bsp19I	CCATGG	1 cut(s)	355
Bsp68I	TCGCGA	2 cut(s)	144, 253
BspANI	GGCC	3 cut(s)	108, 165, 990
BspCNI	CTCAG	2 cut(s)	471, 889
BspFNI	CGCG	2 cut(s)	144, 253
BspLI	GGNNCC	1 cut(s)	74
BspPI	GGATC	2 cut(s)	215, 374
BspQI	GCTCTTC	1 cut(s)	554
BspT107I	GGYRCC	1 cut(s)	72
BsrDI	GCAATG	2 cut(s)	126, 379
BsrI	ACTGG	6 cut(s)	268, 442, 982, 1001, 1052, 1078
BssECI	CCNNGG	2 cut(s)	355, 367
BssMI	GATC	3 cut(s)	139, 207, 379
BssNAI	GTATAC	1 cut(s)	273
BssNI	GRCGYC	2 cut(s)	150, 174
BssT1I	CCWWGG	1 cut(s)	355
Bst1107I	GTATAC	1 cut(s)	273
Bst2UI	CCWGG	2 cut(s)	70, 368
Bst4CI	ACNGT	3 cut(s)	565, 904, 1073
Bst6I	CTCTTC	2 cut(s)	318, 554
BstACI	GRCGYC	2 cut(s)	150, 174
BstAPI	GCANNNNNTGC	1 cut(s)	620
BstBAI	YACGTR	1 cut(s)	929
BstC8I	GCNNGC	1 cut(s)	729
BstDEI	CTNAG	2 cut(s)	458, 876
BstDSI	CCRYGG	1 cut(s)	355
BstF5I	GGATG	1 cut(s)	616
BstFNI	CGCG	2 cut(s)	144, 253
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	3 cut(s)	142, 210, 382
BstMAI	GTCTC	3 cut(s)	53, 105, 519
BstMBI	GATC	3 cut(s)	139, 207, 379
BstMCI	CGRYCG	1 cut(s)	142
BstMWI	GCNNNNNNNGC	5 cut(s)	46, 49, 114, 620, 773
BstNI	CCWGG	2 cut(s)	70, 368
BstSCI	CCNGG	2 cut(s)	68, 366
BstSFI	CTRYAG	2 cut(s)	82, 564
BstSNI	TACGTA	1 cut(s)	929
BstUI	CGCG	2 cut(s)	144, 253
BstV1I	GCAGC	3 cut(s)	166, 577, 751
BstX2I	RGATCY	1 cut(s)	207
BstYI	RGATCY	1 cut(s)	207
BstZ17I	GTATAC	1 cut(s)	273
BsuRI	GGCC	3 cut(s)	108, 165, 990
BtgI	CCRYGG	1 cut(s)	355
BtsCI	GGATG	1 cut(s)	616
BtsIMutI	CAGTG	2 cut(s)	466, 561
BtuMI	TCGCGA	2 cut(s)	144, 253
Cac8I	GCNNGC	1 cut(s)	729
CfoI	GCGC	1 cut(s)	133
Cfr13I	GGNCC	2 cut(s)	428, 989
CseI	GACGC	2 cut(s)	139, 182
Csp6I	GTAC	5 cut(s)	136, 900, 905, 926, 1141
CviAII	CATG	7 cut(s)	356, 685, 893, 1033, 1120, 1128, 1137
CviQI	GTAC	5 cut(s)	136, 900, 905, 926, 1141
DdeI	CTNAG	2 cut(s)	458, 876
DpnI	GATC	3 cut(s)	141, 209, 381
DpnII	GATC	3 cut(s)	139, 207, 379
DriI	GACNNNNNGTC	1 cut(s)	1057
Eam1104I	CTCTTC	2 cut(s)	318, 554
Eam1105I	GACNNNNNGTC	1 cut(s)	1057
EarI	CTCTTC	2 cut(s)	318, 554
EciI	GGCGGA	3 cut(s)	27, 220, 667
Eco105I	TACGTA	1 cut(s)	929
Eco130I	CCWWGG	1 cut(s)	355
Eco32I	GATATC	1 cut(s)	217
Eco47I	GGWCC	1 cut(s)	428
Eco57I	CTGAAG	3 cut(s)	462, 762, 1167
EcoRII	CCWGG	2 cut(s)	68, 366
EcoRV	GATATC	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	355
EcoT22I	ATGCAT	1 cut(s)	625
ErhI	CCWWGG	1 cut(s)	355
FaeI	CATG	7 cut(s)	359, 688, 896, 1036, 1123, 1131, 1140
FalI	AAGNNNNNCTT	2 cut(s)	760, 792
FaqI	GGGAC	2 cut(s)	1059, 1064
FatI	CATG	7 cut(s)	355, 684, 892, 1032, 1119, 1127, 1136
FblI	GTMKAC	2 cut(s)	272, 1064
Fnu4HI	GCNGC	9 cut(s)	41, 44, 47, 50, 177, 180, 203, 591, 765
FokI	GGATG	1 cut(s)	623
Fsp4HI	GCNGC	9 cut(s)	41, 44, 47, 50, 177, 180, 203, 591, 765
FspBI	CTAG	2 cut(s)	167, 789
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	9 cut(s)	41, 44, 47, 50, 177, 180, 203, 591, 765
GsaI	CCCAGC	2 cut(s)	864, 1023
GsuI	CTGGAG	2 cut(s)	350, 984
HaeIII	GGCC	3 cut(s)	108, 165, 990
HapII	CCGG	2 cut(s)	56, 88
HgaI	GACGC	2 cut(s)	139, 182
HhaI	GCGC	1 cut(s)	133
Hin1I	GRCGYC	2 cut(s)	150, 174
Hin1II	CATG	7 cut(s)	359, 688, 896, 1036, 1123, 1131, 1140
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HincII	GTYRAC	1 cut(s)	1045
HindII	GTYRAC	1 cut(s)	1045
HindIII	AAGCTT	1 cut(s)	1092
HinfI	GANTC	8 cut(s)	5, 442, 569, 688, 785, 848, 956, 1087
HpaII	CCGG	2 cut(s)	56, 88
HphI	GGTGA	2 cut(s)	145, 428
Hpy166II	GTNNAC	4 cut(s)	273, 392, 1045, 1065
Hpy188I	TCNGA	7 cut(s)	333, 403, 447, 781, 879, 1086, 1147
Hpy188III	TCNNGA	3 cut(s)	143, 252, 789
Hpy8I	GTNNAC	4 cut(s)	273, 392, 1045, 1065
Hpy99I	CGWCG	2 cut(s)	164, 176
HpyAV	CCTTC	5 cut(s)	140, 407, 498, 1033, 1093
HpyCH4III	ACNGT	3 cut(s)	565, 904, 1073
HpyCH4IV	ACGT	3 cut(s)	822, 913, 928
HpyCH4V	TGCA	8 cut(s)	182, 434, 593, 614, 623, 668, 731, 767
HpyF10VI	GCNNNNNNNGC	5 cut(s)	46, 49, 114, 620, 773
HpyF3I	CTNAG	2 cut(s)	458, 876
HpySE526I	ACGT	3 cut(s)	822, 913, 928
Hsp92I	GRCGYC	2 cut(s)	150, 174
Hsp92II	CATG	7 cut(s)	359, 688, 896, 1036, 1123, 1131, 1140
HspAI	GCGC	1 cut(s)	131
Kzo9I	GATC	3 cut(s)	139, 207, 379
LguI	GCTCTTC	1 cut(s)	554
LmnI	GCTCC	5 cut(s)	122, 313, 563, 1003, 1102
Lsp1109I	GCAGC	3 cut(s)	166, 577, 751
LweI	GCATC	3 cut(s)	601, 632, 751
MaeI	CTAG	2 cut(s)	167, 789
MaeII	ACGT	3 cut(s)	822, 913, 928
MaeIII	GTNAC	2 cut(s)	151, 1003
MalI	GATC	3 cut(s)	141, 209, 381
MboI	GATC	3 cut(s)	139, 207, 379
MboII	GAAGA	5 cut(s)	335, 468, 541, 843, 1048
MflI	RGATCY	1 cut(s)	207
MhlI	GDGCHC	1 cut(s)	119
MluCI	AATT	6 cut(s)	121, 535, 866, 946, 1024, 1054
MlyI	GAGTC	4 cut(s)	14, 451, 794, 950
Mph1103I	ATGCAT	1 cut(s)	625
MroXI	GAANNNNTTC	1 cut(s)	548
MseI	TTAA	2 cut(s)	222, 749
MslI	CAYNNNNRTG	1 cut(s)	736
MspA1I	CMGCKG	1 cut(s)	179
MspI	CCGG	2 cut(s)	56, 88
MspR9I	CCNGG	2 cut(s)	70, 368
MvaI	CCWGG	2 cut(s)	70, 368
MvnI	CGCG	2 cut(s)	144, 253
MwoI	GCNNNNNNNGC	5 cut(s)	46, 49, 114, 620, 773
NcoI	CCATGG	1 cut(s)	355
NdeII	GATC	3 cut(s)	139, 207, 379
NlaIII	CATG	7 cut(s)	359, 688, 896, 1036, 1123, 1131, 1140
NlaIV	GGNNCC	1 cut(s)	74
NmeAIII	GCCGAG	1 cut(s)	84
NmuCI	GTSAC	1 cut(s)	151
NruI	TCGCGA	2 cut(s)	144, 253
NsiI	ATGCAT	1 cut(s)	625
PciSI	GCTCTTC	1 cut(s)	554
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PdmI	GAANNNNTTC	1 cut(s)	548
PfeI	GAWTC	4 cut(s)	569, 688, 848, 1087
PkrI	GCNGC	9 cut(s)	42, 45, 48, 51, 178, 181, 204, 592, 766
Ple19I	CGATCG	1 cut(s)	142
PleI	GAGTC	4 cut(s)	13, 450, 793, 950
PpsI	GAGTC	4 cut(s)	13, 450, 793, 950
Ppu21I	YACGTR	1 cut(s)	929
Psp6I	CCWGG	2 cut(s)	68, 366
PspFI	CCCAGC	2 cut(s)	860, 1019
PspGI	CCWGG	2 cut(s)	68, 366
PspN4I	GGNNCC	1 cut(s)	74
PspPI	GGNCC	2 cut(s)	428, 989
PsuI	RGATCY	1 cut(s)	207
PvuI	CGATCG	1 cut(s)	142
RruI	TCGCGA	2 cut(s)	144, 253
RsaI	GTAC	5 cut(s)	137, 901, 906, 927, 1142
RsaNI	GTAC	5 cut(s)	136, 900, 905, 926, 1141
RseI	CAYNNNNRTG	1 cut(s)	736
SapI	GCTCTTC	1 cut(s)	554
SaqAI	TTAA	2 cut(s)	222, 749
SatI	GCNGC	9 cut(s)	41, 44, 47, 50, 177, 180, 203, 591, 765
Sau3AI	GATC	3 cut(s)	139, 207, 379
Sau96I	GGNCC	2 cut(s)	428, 989
SchI	GAGTC	4 cut(s)	14, 451, 794, 950
ScrFI	CCNGG	2 cut(s)	70, 368
SduI	GDGCHC	1 cut(s)	119
SfaNI	GCATC	3 cut(s)	601, 632, 751
SfcI	CTRYAG	2 cut(s)	82, 564
SinI	GGWCC	1 cut(s)	428
SmiMI	CAYNNNNRTG	1 cut(s)	736
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
SnaBI	TACGTA	1 cut(s)	929
Sse9I	AATT	6 cut(s)	121, 535, 866, 946, 1024, 1054
SspMI	CTAG	2 cut(s)	167, 789
StyD4I	CCNGG	2 cut(s)	68, 366
StyI	CCWWGG	1 cut(s)	355
TaaI	ACNGT	3 cut(s)	565, 904, 1073
TaiI	ACGT	3 cut(s)	825, 916, 931
TaqI	TCGA	1 cut(s)	1167
TasI	AATT	6 cut(s)	121, 535, 866, 946, 1024, 1054
TatI	WGTACW	1 cut(s)	899
TauI	GCSGC	6 cut(s)	43, 46, 49, 52, 179, 205
TfiI	GAWTC	4 cut(s)	569, 688, 848, 1087
Tru1I	TTAA	2 cut(s)	222, 749
Tru9I	TTAA	2 cut(s)	222, 749
TscAI	CASTG	2 cut(s)	466, 568
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	3 cut(s)	179, 590, 764
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	3 cut(s)	115, 701, 1049
TspGWI	ACGGA	1 cut(s)	148
TspRI	CASTG	2 cut(s)	466, 568
VpaK11BI	GGWCC	1 cut(s)	428
XapI	RAATTY	2 cut(s)	535, 1024
XbaI	TCTAGA	1 cut(s)	788
XmiI	GTMKAC	2 cut(s)	272, 1064
XmnI	GAANNNNTTC	1 cut(s)	548
XspI	CTAG	2 cut(s)	167, 789
Zsp2I	ATGCAT	1 cut(s)	625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.