Rorug07G0026900

BTB POZ domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
1902714 .. 1907060
4347 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0026900.1

Sequence Viewer

Length: 1512 bp
ATGGCGATCCAAATTCCGAGCCGGCAACTCTTCATCGGCGGCGAGTGGAGGGAACCAGTTCTCAAGAAACGCATCCCTATCATCAACCCAGCCACCGAACAAGCCATCGGGGATATTCCGGCAGCTACTGCTGAAGATGTGGAGATTGCGGTGGAGGCGGCTCGGAAAGCCCTTGCCAGGAACAAGGGGAAAGATTGGGCTTCGGCACCGGGGGCGGTTCGTGCTAAGTATTTGCGAGCCATTGCTGCTAAGATAACAGAGAGGAAATCTGAGCTAGCGAAACTTGAAGCAAGTGATTGTGGAAAACCACTGGATGAAGCCGTATGGGACATGGAAGATGTGGCCGGGTGTTTTGAGTACTATGCGGACCTTGCTGAAGGTTTGGATAAACAGCAAAACCTTTCTATTTCACTTCCCATGGAAACGTTTAAATCTCATGTTCTGAAGGAGCCCATCGGGGTTGTTGCGTTGATTACTCCATGGAACTACCCTTTATTAATGGCTACATGGAAGGTAGCTCCTGCCTTGGCTGCTGGGTGTGCTGCAATACTGAAGCCGTCTGAGCTGGCATCGGTAACTTGTTTGGAGCTAGCTGAGGTGTGTAGAGAGATTGGTCTTCCTCCTGGTGTCCTCAATATTCTGACTGGGCTGGGCCATGAAGCTGGCGCTCCTTTGGCATCTCACCCCCATGTTGATAAGATTGCATTTACTGGAAGTACTCTCACAGGGAGCAAGGTTATGTCAGCAGCGGCTCAACAGGTCAAGCCTGTTTCTTTGGAGCTTGGAGGGAAAAGCCCAATTGTTGTTTTTGACGATGTTGATATTGAGAAAGCTGCTGAATGGACGGCCTTTGGCGTCTTTTGGACAAACGGTCAGATTTGCAGTGCAACATCCCGTCTTATAGTGCATGAAAGCATCGCTGCAAAATTCTTAGACAGACTTGTCGAATGGTGCAAAAACATCAAGATTTCAGATCCTATGGAAGAAGGTTGCAGGCTTGGCCCTGTTGTTTCTGAAGGGCAGTATCAGAAAATATTGAAGATCATCTCAACAGCTAAGAGTGAAGGCGCAAAAGTTTTGTCTGGTGGGGTTCGTCCTGAGCATCTAAAGAAAGGATTTTACATTGAACCAACCATCATAACCGATGTCACAAACTCCATGCAAATTTGGAGAGAAGAAGTTTTCGGACCTGTTCTTTGTGTCAAAACATTCAGTTCAGAAGAAGAAGCTATTGAATTAGCAAATGACACCCAATTTGGCTTGGGTGCTGCTGTCATATCGAATGATTTAGAAAGGTGTGAGCGCGTTGCTAAGGCCTTTCAGGCAGGAGTTGTCTGGATCAATTGTTCACAACCATGCTTCACTCAGGCTCCTTGGGGAGGCAACAAACGTAGTGGTTTCGGGCGTGAATTAGGGACATGGGGACTTGATAATTACATGACCGTGAAGCAGGTTACTCAATATATATCTGATGAACCTTGGGGTTGGTACAAGTCGCCTTCAAAACTGTGA

Protein Analysis

503

Amino Acids

54.67

Weight (kDa)

5.55

Isoelectric Point (pI)

32.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 16 - 485 3.6e-172 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 941
Acc36I ACCTGC 1 cut(s) 1441
AccB1I GGYRCC 1 cut(s) 205
AccII CGCG 1 cut(s) 1305
AciI CCGC 6 cut(s) 39, 149, 158, 215, 365, 749
AclI AACGTT 1 cut(s) 425
AclWI GGATC 2 cut(s) 968, 1346
AcoI YGGCCR 1 cut(s) 342
AcsI RAATTY 3 cut(s) 12, 926, 1164
AcuI CTGAAG 5 cut(s) 153, 396, 464, 572, 1035
AcyI GRCGYC 1 cut(s) 855
AfaI GTAC 3 cut(s) 359, 718, 1490
AfiI CCNNNNNNNGG 2 cut(s) 177, 1379
AgsI TTSAA 5 cut(s) 287, 1039, 1127, 1235, 1503
AhdI GACNNNNNGTC 1 cut(s) 870
AjnI CCWGG 2 cut(s) 176, 622
AloI GAACNNNNNNTCC 2 cut(s) 1330, 1362
AlwI GGATC 2 cut(s) 968, 1346
AlwNI CAGNNNCTG 1 cut(s) 128
AoxI GGCC 5 cut(s) 342, 652, 846, 1000, 1314
ApeKI GCWGC 8 cut(s) 122, 245, 530, 542, 746, 833, 920, 1268
ApoI RAATTY 3 cut(s) 12, 926, 1164
ArsI GACNNNNNNTTYG 6 cut(s) 1064, 1096, 1179, 1211, 1238, 1270
AseI ATTAAT 1 cut(s) 497
Asp700I GAANNNNTTC 1 cut(s) 57
AspLEI GCGC 3 cut(s) 668, 1070, 1305
AspS9I GGNCC 4 cut(s) 367, 652, 1001, 1187
AsuC2I CCSGG 2 cut(s) 210, 346
AsuHPI GGTGA 1 cut(s) 674
AsuNHI GCTAGC 2 cut(s) 274, 589
AvaII GGWCC 2 cut(s) 367, 1187
BanI GGYRCC 1 cut(s) 205
BanII GRGCYC 1 cut(s) 453
BbsI GAAGAC 1 cut(s) 608
BbvCI CCTCAGC 1 cut(s) 594
BbvI GCAGC 8 cut(s) 134, 232, 517, 529, 758, 820, 907, 1255
BccI CCATC 3 cut(s) 113, 461, 1142
BceAI ACGGC 3 cut(s) 305, 541, 861
BciT130I CCWGG 2 cut(s) 178, 624
BcnI CCSGG 2 cut(s) 210, 346
BfaI CTAG 2 cut(s) 275, 590
BfoI RGCGCY 1 cut(s) 669
BfuAI ACCTGC 1 cut(s) 1441
BglI GCCNNNNNGGC 1 cut(s) 1322
BmcAI AGTACT 2 cut(s) 359, 718
Bme1390I CCNGG 4 cut(s) 178, 210, 346, 624
Bme18I GGWCC 2 cut(s) 367, 1187
BmeRI GACNNNNNGTC 1 cut(s) 870
BmgT120I GGNCC 4 cut(s) 367, 652, 1001, 1187
BmiI GGNNCC 4 cut(s) 54, 207, 450, 1371
BmrFI CCNGG 4 cut(s) 178, 210, 346, 624
BmrI ACTGGG 1 cut(s) 654
BmsI GCATC 5 cut(s) 81, 578, 686, 924, 1111
BmtI GCTAGC 2 cut(s) 278, 593
BmuI ACTGGG 1 cut(s) 654
BpiI GAAGAC 1 cut(s) 608
Bpu10I CCTNAGC 3 cut(s) 594, 1098, 1311
BpuEI CTTGAG 1 cut(s) 47
BpuMI CCSGG 2 cut(s) 210, 346
BsaHI GRCGYC 1 cut(s) 855
BsaJI CCNNGG 6 cut(s) 209, 417, 479, 525, 1373, 1478
BsaXI ACNNNNNCTCC 2 cut(s) 1354, 1384
Bsc4I CCNNNNNNNGG 2 cut(s) 177, 1379
Bse118I RCCGGY 1 cut(s) 21
Bse1I ACTGG 4 cut(s) 56, 315, 649, 715
Bse3DI GCAATG 1 cut(s) 240
BseBI CCWGG 2 cut(s) 178, 624
BseDI CCNNGG 6 cut(s) 209, 417, 479, 525, 1373, 1478
BseGI GGATG 3 cut(s) 72, 319, 890
BseLI CCNNNNNNNGG 2 cut(s) 177, 1379
BseMI GCAATG 1 cut(s) 240
BseMII CTCAG 5 cut(s) 261, 552, 585, 1089, 1379
BseNI ACTGG 4 cut(s) 56, 315, 649, 715
BseXI GCAGC 8 cut(s) 134, 232, 517, 529, 758, 820, 907, 1255
BseYI CCCAGC 3 cut(s) 88, 533, 649
Bsh1236I CGCG 1 cut(s) 1305
BshFI GGCC 5 cut(s) 344, 654, 848, 1002, 1316
BshNI GGYRCC 1 cut(s) 205
BsiSI CCGG 4 cut(s) 22, 119, 209, 345
BslFI GGGAC 3 cut(s) 341, 1429, 1437
BslI CCNNNNNNNGG 2 cut(s) 177, 1379
BsmFI GGGAC 3 cut(s) 341, 1429, 1437
BsnI GGCC 5 cut(s) 344, 654, 848, 1002, 1316
Bsp1286I GDGCHC 1 cut(s) 453
Bsp143I GATC 4 cut(s) 6, 973, 1041, 1338
Bsp19I CCATGG 2 cut(s) 417, 479
BspACI CCGC 6 cut(s) 39, 149, 158, 215, 365, 749
BspANI GGCC 5 cut(s) 344, 654, 848, 1002, 1316
BspCNI CTCAG 5 cut(s) 262, 553, 586, 1090, 1378
BspFNI CGCG 1 cut(s) 1305
BspLI GGNNCC 4 cut(s) 54, 207, 450, 1371
BspMI ACCTGC 1 cut(s) 1441
BspOI GCTAGC 2 cut(s) 278, 593
BspPI GGATC 2 cut(s) 968, 1346
BspT107I GGYRCC 1 cut(s) 205
BsrDI GCAATG 1 cut(s) 240
BsrFI RCCGGY 1 cut(s) 21
BsrI ACTGG 4 cut(s) 56, 315, 649, 715
BssAI RCCGGY 1 cut(s) 21
BssECI CCNNGG 6 cut(s) 209, 417, 479, 525, 1373, 1478
BssMI GATC 4 cut(s) 6, 973, 1041, 1338
BssNI GRCGYC 1 cut(s) 855
BssT1I CCWWGG 5 cut(s) 417, 479, 525, 1373, 1478
Bst2UI CCWGG 2 cut(s) 178, 624
Bst4CI ACNGT 3 cut(s) 872, 1444, 1509
Bst6I CTCTTC 1 cut(s) 35
BstACI GRCGYC 1 cut(s) 855
BstAPI GCANNNNNTGC 1 cut(s) 128
BstC8I GCNNGC 7 cut(s) 23, 237, 276, 567, 591, 664, 995
BstDSI CCRYGG 2 cut(s) 417, 479
BstENI CCTNNNNNAGG 1 cut(s) 1377
BstF5I GGATG 3 cut(s) 72, 319, 890
BstFNI CGCG 1 cut(s) 1305
BstH2I RGCGCY 1 cut(s) 669
BstHHI GCGC 3 cut(s) 668, 1070, 1305
BstKTI GATC 4 cut(s) 9, 976, 1044, 1341
BstMBI GATC 4 cut(s) 6, 973, 1041, 1338
BstNI CCWGG 2 cut(s) 178, 624
BstSCI CCNGG 4 cut(s) 176, 208, 344, 622
BstUI CGCG 1 cut(s) 1305
BstV1I GCAGC 8 cut(s) 134, 232, 517, 529, 758, 820, 907, 1255
BstV2I GAAGAC 1 cut(s) 608
BstX2I RGATCY 1 cut(s) 973
BstXI CCANNNNNNTGG 1 cut(s) 662
BstYI RGATCY 1 cut(s) 973
BsuRI GGCC 5 cut(s) 344, 654, 848, 1002, 1316
BtgI CCRYGG 2 cut(s) 417, 479
BtgZI GCGATG 1 cut(s) 901
BtsCI GGATG 3 cut(s) 72, 319, 890
BtsI GCAGTG 1 cut(s) 889
BtsIMutI CAGTG 2 cut(s) 308, 889
BveI ACCTGC 1 cut(s) 1441
Cac8I GCNNGC 7 cut(s) 23, 237, 276, 567, 591, 664, 995
CaiI CAGNNNCTG 1 cut(s) 128
CfoI GCGC 3 cut(s) 668, 1070, 1305
Cfr10I RCCGGY 1 cut(s) 21
Cfr13I GGNCC 4 cut(s) 367, 652, 1001, 1187
CseI GACGC 1 cut(s) 844
Csp6I GTAC 3 cut(s) 358, 717, 1489
CspCI CAANNNNNGTGG 2 cut(s) 1375, 1410
CviQI GTAC 3 cut(s) 358, 717, 1489
DpnI GATC 4 cut(s) 8, 975, 1043, 1340
DpnII GATC 4 cut(s) 6, 973, 1041, 1338
DraI TTTAAA 1 cut(s) 430
DrdI GACNNNNNNGTC 1 cut(s) 941
DriI GACNNNNNGTC 1 cut(s) 870
DseDI GACNNNNNNGTC 1 cut(s) 941
EaeI YGGCCR 1 cut(s) 342
Eam1104I CTCTTC 1 cut(s) 35
Eam1105I GACNNNNNGTC 1 cut(s) 870
EarI CTCTTC 1 cut(s) 35
Eco130I CCWWGG 5 cut(s) 417, 479, 525, 1373, 1478
Eco147I AGGCCT 1 cut(s) 1316
Eco24I GRGCYC 1 cut(s) 453
Eco47I GGWCC 2 cut(s) 367, 1187
Eco57I CTGAAG 5 cut(s) 153, 396, 464, 572, 1035
EcoNI CCTNNNNNAGG 1 cut(s) 1377
EcoRII CCWGG 2 cut(s) 176, 622
EcoT14I CCWWGG 5 cut(s) 417, 479, 525, 1373, 1478
EcoT38I GRGCYC 1 cut(s) 453
ErhI CCWWGG 5 cut(s) 417, 479, 525, 1373, 1478
FaqI GGGAC 3 cut(s) 341, 1429, 1437
FokI GGATG 3 cut(s) 59, 326, 877
FriOI GRGCYC 1 cut(s) 453
FspBI CTAG 2 cut(s) 275, 590
GlaI GCGC 3 cut(s) 667, 1069, 1304
GsaI CCCAGC 3 cut(s) 92, 537, 653
HaeII RGCGCY 1 cut(s) 669
HaeIII GGCC 5 cut(s) 344, 654, 848, 1002, 1316
HapII CCGG 4 cut(s) 22, 119, 209, 345
HgaI GACGC 1 cut(s) 844
HhaI GCGC 3 cut(s) 668, 1070, 1305
Hin1I GRCGYC 1 cut(s) 855
Hin6I GCGC 3 cut(s) 666, 1068, 1303
HinP1I GCGC 3 cut(s) 666, 1068, 1303
HpaII CCGG 4 cut(s) 22, 119, 209, 345
HphI GGTGA 1 cut(s) 674
Hpy166II GTNNAC 1 cut(s) 1349
Hpy188III TCNNGA 4 cut(s) 64, 964, 1097, 1336
Hpy8I GTNNAC 1 cut(s) 1349
HpyAV CCTTC 7 cut(s) 371, 439, 505, 980, 1010, 1058, 1509
HpyCH4III ACNGT 3 cut(s) 872, 1444, 1509
HpyCH4IV ACGT 2 cut(s) 425, 1390
HpyCH4V TGCA 9 cut(s) 545, 704, 882, 887, 907, 923, 954, 993, 1162
HpySE526I ACGT 2 cut(s) 425, 1390
Hsp92I GRCGYC 1 cut(s) 855
HspAI GCGC 3 cut(s) 666, 1068, 1303
KroI GCCGGC 1 cut(s) 21
KroNI GCCGGC 1 cut(s) 23
Kzo9I GATC 4 cut(s) 6, 973, 1041, 1338
LmnI GCTCC 7 cut(s) 448, 523, 586, 673, 729, 778, 1375
Lsp1109I GCAGC 8 cut(s) 134, 232, 517, 529, 758, 820, 907, 1255
LweI GCATC 5 cut(s) 81, 578, 686, 924, 1111
MaeI CTAG 2 cut(s) 275, 590
MaeII ACGT 2 cut(s) 425, 1390
MaeIII GTNAC 3 cut(s) 574, 1147, 1453
MalI GATC 4 cut(s) 8, 975, 1043, 1340
MboI GATC 4 cut(s) 6, 973, 1041, 1338
MboII GAAGA 9 cut(s) 22, 146, 347, 608, 995, 1051, 1187, 1232, 1235
MfeI CAATTG 2 cut(s) 798, 1342
MflI RGATCY 1 cut(s) 973
MhlI GDGCHC 1 cut(s) 453
MluCI AATT 9 cut(s) 12, 798, 926, 1164, 1235, 1253, 1342, 1409, 1432
MnlI CCTC 8 cut(s) 42, 148, 255, 589, 630, 641, 779, 1373
MroNI GCCGGC 1 cut(s) 21
MroXI GAANNNNTTC 1 cut(s) 57
MseI TTAA 2 cut(s) 429, 497
MslI CAYNNNNRTG 3 cut(s) 687, 1354, 1442
MspA1I CMGCKG 1 cut(s) 749
MspI CCGG 4 cut(s) 22, 119, 209, 345
MspR9I CCNGG 4 cut(s) 178, 210, 346, 624
MunI CAATTG 2 cut(s) 798, 1342
MvaI CCWGG 2 cut(s) 178, 624
MvnI CGCG 1 cut(s) 1305
NaeI GCCGGC 1 cut(s) 23
NciI CCSGG 2 cut(s) 210, 346
NcoI CCATGG 2 cut(s) 417, 479
NdeII GATC 4 cut(s) 6, 973, 1041, 1338
NgoMIV GCCGGC 1 cut(s) 21
NheI GCTAGC 2 cut(s) 274, 589
NlaIV GGNNCC 4 cut(s) 54, 207, 450, 1371
NmuCI GTSAC 1 cut(s) 1147
PceI AGGCCT 1 cut(s) 1316
PdiI GCCGGC 1 cut(s) 23
PdmI GAANNNNTTC 1 cut(s) 57
PshBI ATTAAT 1 cut(s) 497
Psp1406I AACGTT 1 cut(s) 425
Psp6I CCWGG 2 cut(s) 176, 622
PspFI CCCAGC 3 cut(s) 88, 533, 649
PspGI CCWGG 2 cut(s) 176, 622
PspN4I GGNNCC 4 cut(s) 54, 207, 450, 1371
PspPI GGNCC 4 cut(s) 367, 652, 1001, 1187
PstNI CAGNNNCTG 1 cut(s) 128
PsuI RGATCY 1 cut(s) 973
RsaI GTAC 3 cut(s) 359, 718, 1490
RsaNI GTAC 3 cut(s) 358, 717, 1489
RseI CAYNNNNRTG 3 cut(s) 687, 1354, 1442
SaqAI TTAA 2 cut(s) 429, 497
Sau3AI GATC 4 cut(s) 6, 973, 1041, 1338
Sau96I GGNCC 4 cut(s) 367, 652, 1001, 1187
ScaI AGTACT 2 cut(s) 359, 718
ScrFI CCNGG 4 cut(s) 178, 210, 346, 624
SduI GDGCHC 1 cut(s) 453
SfaNI GCATC 5 cut(s) 81, 578, 686, 924, 1111
SinI GGWCC 2 cut(s) 367, 1187
SmiMI CAYNNNNRTG 3 cut(s) 687, 1354, 1442
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
Sse9I AATT 9 cut(s) 12, 798, 926, 1164, 1235, 1253, 1342, 1409, 1432
SseBI AGGCCT 1 cut(s) 1316
SsiI CCGC 6 cut(s) 39, 149, 158, 215, 365, 749
SspI AATATT 2 cut(s) 637, 1035
SspMI CTAG 2 cut(s) 275, 590
StuI AGGCCT 1 cut(s) 1316
StyD4I CCNGG 4 cut(s) 176, 208, 344, 622
StyI CCWWGG 5 cut(s) 417, 479, 525, 1373, 1478
TaaI ACNGT 3 cut(s) 872, 1444, 1509
TaiI ACGT 2 cut(s) 428, 1393
TaqI TCGA 2 cut(s) 945, 1280
TasI AATT 9 cut(s) 12, 798, 926, 1164, 1235, 1253, 1342, 1409, 1432
TatI WGTACW 2 cut(s) 357, 716
TauI GCSGC 3 cut(s) 42, 161, 752
Tru1I TTAA 2 cut(s) 429, 497
Tru9I TTAA 2 cut(s) 429, 497
TscAI CASTG 2 cut(s) 315, 889
TseFI GTSAC 1 cut(s) 1147
TseI GCWGC 8 cut(s) 122, 245, 530, 542, 746, 833, 920, 1268
Tsp45I GTSAC 1 cut(s) 1147
TspDTI ATGAA 5 cut(s) 22, 330, 672, 924, 1488
TspRI CASTG 2 cut(s) 315, 889
VpaK11BI GGWCC 2 cut(s) 367, 1187
VspI ATTAAT 1 cut(s) 497
XagI CCTNNNNNAGG 1 cut(s) 1377
XapI RAATTY 3 cut(s) 12, 926, 1164
XmnI GAANNNNTTC 1 cut(s) 57
XspI CTAG 2 cut(s) 275, 590
ZrmI AGTACT 2 cut(s) 359, 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.