Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001902

Physical Location & Seq

Genomic Coordinates Reverse (-)

1886672 .. 1888229

Gene Structure 1558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0026800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGGCGAAAATAAGGTGACTATAATGATTCTGAAGGTAGACCTTCAGTGTGAAAAATGCTACAGGAAGGTCAAGAAAGTCCTCTGTAAATTCCCTCAAATACGAGACCAGATGTACGACGAGAAGAACAACCAGGTGATTATCAAAGTGGTCTGCTGCTGTCCTGAAAAGATCAGGGACAAGCTATGCTGCAAAGGAGGTGTCGCCATTACGAGCATCGAGATCAAAGAGCCCCAGAAGCCCAAGCCTCCTTCTCCGGCTCCGAAACCTGCTCCGGCTCCGGCTCCGAAACCTGCTCCGACTCCGGCTCCGAAACCTGCTCCCGCTCCTGCTCCGAAACCAGCTCCGGCGCCGGTACCTGCTTGCCCTCCGCGGCCGGTGAACCCGTGTTGTATGGATTGTTACGGAGGGCGTCATGGTGGTCCCTGCGAAACTGGGTATGGTGCTCCGGCTCCGGCGCCGGTTCCTGCTTGCCGTCCGCGGCCGTTGAACCCGTGTTGTATGGATTGTTACGAAGGGCGTCCTGGTGGTCCCTGCGAAACTGGGTACGGTTACAGTGGGCCTGCCCCTTACACACAGTACGATGGCTACTACGGAAGGCCGGTCTATGATAGTTACGGCGGTGGGAGGAGTTACTGCGTGACCCGCCCCCATTGTTTCAGTGAAGAAAATCCCCAAGTATGCGCCATCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0010114 GO:0031461 GO:0031463 GO:0032991 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0050896 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BACK BTB

Protein Analysis

231

Amino Acids

24.88

Weight (kDa)

8.8

Isoelectric Point (pI)

63.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46260 AT3G61600 AT3G61600
fragaria_vesca	FvH4_5g03751 FvH4_5g03751 FvH4_5g03751 FvH4_5g03751 FvH4_5g03751 FvH4_7g15752 FvH4_7g15752
malus_domestica	MD01G1074300.v1.1 MD07G1143200.v1.1 MD14G1117700.v1.1
prunus_persica	Prupe.2G182300_v2.0.a1 Prupe.2G182300_v2.0.a1 Prupe.5G112100_v2.0.a1 Prupe.5G112100_v2.0.a1 Prupe.5G112100_v2.0.a1
pyrus_communis	pycom06g09390 pycom07g14190
rosa_chinensis	RchiOBHm_Chr1g0358521 RchiOBHm_Chr7g0195841
rosa_laevigata	RLG00000004083 RLG00000027955
rosa_multiflora	Rmu_co8444369.1_g000001 Rmu_sc0001609.1_g000004 Rmu_sc0004016.1_g000020
rosa_roxburghii	Rroxscaffold_3G00260050 Rroxscaffold_4G00297840
rosa_rugosa	Rorug01G0262200 Rorug01G0262300 Rorug07G0026800 Rorug07G0026900 Rorug07G0027000 Rorug07G0027000 Rorug07G0027100
rosa_samantha	Rh1AG276900 Rh1BG243300 Rh1CG260500 Rh1DG271600 Rh7AG154600 Rh7BG156400 Rh7CG160100 Rh7DG155600
rosa_wichuraiana	Rw1G024620 Rw7G013210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	4 cut(s)	277, 301, 325, 367
Acc65I	GGTACC	1 cut(s)	355
AccB1I	GGYRCC	3 cut(s)	349, 355, 457
AccBSI	CCGCTC	1 cut(s)	326
AccI	GTMKAC	1 cut(s)	39
AccII	CGCG	2 cut(s)	373, 481
AciI	CCGC	7 cut(s)	324, 371, 373, 479, 481, 621, 646
AcoI	YGGCCR	2 cut(s)	374, 482
AcsI	RAATTY	1 cut(s)	89
AcuI	CTGAAG	2 cut(s)	29, 53
AcyI	GRCGYC	4 cut(s)	350, 412, 458, 520
AfaI	GTAC	4 cut(s)	116, 357, 548, 581
AgsI	TTSAA	1 cut(s)	490
AjnI	CCWGG	2 cut(s)	132, 523
AluBI	AGCT	2 cut(s)	184, 344
AluI	AGCT	2 cut(s)	184, 344
Alw21I	GWGCWC	1 cut(s)	448
Alw26I	GTCTC	1 cut(s)	99
AoxI	GGCC	4 cut(s)	374, 482, 560, 599
ApeKI	GCWGC	2 cut(s)	156, 189
ApoI	RAATTY	1 cut(s)	89
ArsI	GACNNNNNNTTYG	2 cut(s)	186, 218
Asp718I	GGTACC	1 cut(s)	355
AspLEI	GCGC	3 cut(s)	352, 460, 686
AspS9I	GGNCC	3 cut(s)	422, 530, 560
AsuHPI	GGTGA	3 cut(s)	28, 148, 391
AvaII	GGWCC	2 cut(s)	422, 530
BanI	GGYRCC	3 cut(s)	349, 355, 457
BanII	GRGCYC	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	448
BbvI	GCAGC	2 cut(s)	143, 176
BccI	CCATC	2 cut(s)	578, 695
BceAI	ACGGC	3 cut(s)	459, 469, 634
BciT130I	CCWGG	2 cut(s)	134, 525
BcoDI	GTCTC	1 cut(s)	99
BfmI	CTRYAG	1 cut(s)	61
BfoI	RGCGCY	2 cut(s)	353, 461
BfuAI	ACCTGC	4 cut(s)	277, 301, 325, 367
BisI	GCNGC	4 cut(s)	157, 190, 374, 482
BlsI	GCNGC	4 cut(s)	158, 191, 375, 483
Bme1390I	CCNGG	2 cut(s)	134, 525
Bme18I	GGWCC	2 cut(s)	422, 530
BmgT120I	GGNCC	3 cut(s)	422, 530, 560
BmrFI	CCNGG	2 cut(s)	134, 525
BmrI	ACTGGG	2 cut(s)	444, 552
BmsI	GCATC	1 cut(s)	225
BmuI	ACTGGG	2 cut(s)	444, 552
BsaHI	GRCGYC	4 cut(s)	350, 412, 458, 520
BsaI	GGTCTC	1 cut(s)	99
BsaJI	CCNNGG	2 cut(s)	371, 479
BsaXI	ACNNNNNCTCC	2 cut(s)	292, 322
Bse118I	RCCGGY	4 cut(s)	352, 376, 460, 601
Bse1I	ACTGG	2 cut(s)	439, 547
BseBI	CCWGG	2 cut(s)	134, 525
BseDI	CCNNGG	2 cut(s)	371, 479
BseNI	ACTGG	2 cut(s)	439, 547
BseRI	GAGGAG	1 cut(s)	643
BseX3I	CGGCCG	2 cut(s)	374, 482
BseXI	GCAGC	2 cut(s)	143, 176
Bsh1236I	CGCG	2 cut(s)	373, 481
Bsh1285I	CGRYCG	2 cut(s)	377, 485
BshFI	GGCC	4 cut(s)	376, 484, 562, 601
BshNI	GGYRCC	3 cut(s)	349, 355, 457
BsiEI	CGRYCG	2 cut(s)	377, 485
BsiHKAI	GWGCWC	1 cut(s)	448
BslFI	GGGAC	3 cut(s)	191, 408, 516
BsmAI	GTCTC	1 cut(s)	99
BsmFI	GGGAC	3 cut(s)	191, 408, 516
BsnI	GGCC	4 cut(s)	376, 484, 562, 601
Bso31I	GGTCTC	1 cut(s)	99
Bsp1286I	GDGCHC	2 cut(s)	234, 448
Bsp143I	GATC	2 cut(s)	171, 222
BspACI	CCGC	7 cut(s)	324, 371, 373, 479, 481, 621, 646
BspANI	GGCC	4 cut(s)	376, 484, 562, 601
BspFNI	CGCG	2 cut(s)	373, 481
BspMI	ACCTGC	4 cut(s)	277, 301, 325, 367
BspT107I	GGYRCC	3 cut(s)	349, 355, 457
BspTNI	GGTCTC	1 cut(s)	99
BsrBI	CCGCTC	1 cut(s)	326
BsrFI	RCCGGY	4 cut(s)	352, 376, 460, 601
BsrI	ACTGG	2 cut(s)	439, 547
BssAI	RCCGGY	4 cut(s)	352, 376, 460, 601
BssECI	CCNNGG	2 cut(s)	371, 479
BssMI	GATC	2 cut(s)	171, 222
BssNI	GRCGYC	4 cut(s)	350, 412, 458, 520
Bst2UI	CCWGG	2 cut(s)	134, 525
Bst4CI	ACNGT	3 cut(s)	551, 557, 579
BstACI	GRCGYC	4 cut(s)	350, 412, 458, 520
BstC8I	GCNNGC	3 cut(s)	364, 472, 564
BstDSI	CCRYGG	2 cut(s)	371, 479
BstFNI	CGCG	2 cut(s)	373, 481
BstH2I	RGCGCY	2 cut(s)	353, 461
BstHHI	GCGC	3 cut(s)	352, 460, 686
BstKTI	GATC	2 cut(s)	174, 225
BstMAI	GTCTC	1 cut(s)	99
BstMBI	GATC	2 cut(s)	171, 222
BstMCI	CGRYCG	2 cut(s)	377, 485
BstMWI	GCNNNNNNNGC	2 cut(s)	238, 645
BstNI	CCWGG	2 cut(s)	134, 525
BstSCI	CCNGG	2 cut(s)	132, 523
BstSFI	CTRYAG	1 cut(s)	61
BstUI	CGCG	2 cut(s)	373, 481
BstV1I	GCAGC	2 cut(s)	143, 176
BstZI	CGGCCG	2 cut(s)	374, 482
BsuRI	GGCC	4 cut(s)	376, 484, 562, 601
BtgI	CCRYGG	2 cut(s)	371, 479
BtsIMutI	CAGTG	3 cut(s)	53, 562, 667
BveI	ACCTGC	4 cut(s)	277, 301, 325, 367
Cac8I	GCNNGC	3 cut(s)	364, 472, 564
CfoI	GCGC	3 cut(s)	352, 460, 686
Cfr10I	RCCGGY	4 cut(s)	352, 376, 460, 601
Cfr13I	GGNCC	3 cut(s)	422, 530, 560
Cfr42I	CCGCGG	2 cut(s)	374, 482
CseI	GACGC	2 cut(s)	401, 509
CsiI	ACCWGGT	1 cut(s)	132
Csp6I	GTAC	4 cut(s)	115, 356, 547, 580
CviAII	CATG	2 cut(s)	416, 691
CviQI	GTAC	4 cut(s)	115, 356, 547, 580
DinI	GGCGCC	2 cut(s)	351, 459
DpnI	GATC	2 cut(s)	173, 224
DpnII	GATC	2 cut(s)	171, 222
EaeI	YGGCCR	2 cut(s)	374, 482
EagI	CGGCCG	2 cut(s)	374, 482
EclXI	CGGCCG	2 cut(s)	374, 482
Eco24I	GRGCYC	1 cut(s)	234
Eco31I	GGTCTC	1 cut(s)	99
Eco47I	GGWCC	2 cut(s)	422, 530
Eco52I	CGGCCG	2 cut(s)	374, 482
Eco57I	CTGAAG	2 cut(s)	29, 53
EcoRII	CCWGG	2 cut(s)	132, 523
EcoT38I	GRGCYC	1 cut(s)	234
EgeI	GGCGCC	2 cut(s)	351, 459
EheI	GGCGCC	2 cut(s)	351, 459
FaeI	CATG	2 cut(s)	419, 694
FaiI	YATR	9 cut(s)	23, 187, 395, 417, 441, 503, 609, 682, 692
FaqI	GGGAC	3 cut(s)	191, 408, 516
FatI	CATG	2 cut(s)	415, 690
FauI	CCCGC	2 cut(s)	331, 653
FblI	GTMKAC	1 cut(s)	39
Fnu4HI	GCNGC	4 cut(s)	157, 190, 374, 482
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	4 cut(s)	157, 190, 374, 482
GlaI	GCGC	3 cut(s)	351, 459, 685
GluI	GCNGC	4 cut(s)	157, 190, 374, 482
HaeII	RGCGCY	2 cut(s)	353, 461
HaeIII	GGCC	4 cut(s)	376, 484, 562, 601
HgaI	GACGC	2 cut(s)	401, 509
HhaI	GCGC	3 cut(s)	352, 460, 686
Hin1I	GRCGYC	4 cut(s)	350, 412, 458, 520
Hin1II	CATG	2 cut(s)	419, 694
Hin6I	GCGC	3 cut(s)	350, 458, 684
HinP1I	GCGC	3 cut(s)	350, 458, 684
HinfI	GANTC	2 cut(s)	28, 301
HphI	GGTGA	3 cut(s)	28, 148, 391
Hpy166II	GTNNAC	2 cut(s)	40, 382
Hpy188I	TCNGA	6 cut(s)	33, 264, 288, 300, 312, 336
Hpy188III	TCNNGA	3 cut(s)	73, 164, 220
Hpy8I	GTNNAC	2 cut(s)	40, 382
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	6 cut(s)	28, 53, 61, 261, 509, 591
HpyCH4III	ACNGT	3 cut(s)	551, 557, 579
HpyCH4V	TGCA	1 cut(s)	192
HpyF10VI	GCNNNNNNNGC	2 cut(s)	238, 645
Hsp92I	GRCGYC	4 cut(s)	350, 412, 458, 520
Hsp92II	CATG	2 cut(s)	419, 694
HspAI	GCGC	3 cut(s)	350, 458, 684
KasI	GGCGCC	2 cut(s)	349, 457
KpnI	GGTACC	1 cut(s)	359
KspI	CCGCGG	2 cut(s)	374, 482
Kzo9I	GATC	2 cut(s)	171, 222
Lsp1109I	GCAGC	2 cut(s)	143, 176
LweI	GCATC	1 cut(s)	225
MabI	ACCWGGT	1 cut(s)	132
MaeIII	GTNAC	7 cut(s)	16, 401, 509, 551, 614, 632, 640
MalI	GATC	2 cut(s)	173, 224
MbiI	CCGCTC	1 cut(s)	326
MboI	GATC	2 cut(s)	171, 222
MboII	GAAGA	2 cut(s)	136, 677
MhlI	GDGCHC	2 cut(s)	234, 448
MluCI	AATT	1 cut(s)	89
Mly113I	GGCGCC	2 cut(s)	350, 458
MlyI	GAGTC	1 cut(s)	295
MmeI	TCCRAC	1 cut(s)	323
MnlI	CCTC	7 cut(s)	92, 105, 191, 258, 378, 401, 621
MspA1I	CMGCKG	2 cut(s)	373, 481
MspR9I	CCNGG	2 cut(s)	134, 525
MvaI	CCWGG	2 cut(s)	134, 525
MvnI	CGCG	2 cut(s)	373, 481
MwoI	GCNNNNNNNGC	2 cut(s)	238, 645
NarI	GGCGCC	2 cut(s)	350, 458
NdeII	GATC	2 cut(s)	171, 222
NlaIII	CATG	2 cut(s)	419, 694
NmuCI	GTSAC	2 cut(s)	16, 640
PfeI	GAWTC	1 cut(s)	28
PkrI	GCNGC	4 cut(s)	158, 191, 375, 483
PleI	GAGTC	1 cut(s)	295
PluTI	GGCGCC	2 cut(s)	353, 461
PpsI	GAGTC	1 cut(s)	295
Psp6I	CCWGG	2 cut(s)	132, 523
PspGI	CCWGG	2 cut(s)	132, 523
PspPI	GGNCC	3 cut(s)	422, 530, 560
RsaI	GTAC	4 cut(s)	116, 357, 548, 581
RsaNI	GTAC	4 cut(s)	115, 356, 547, 580
SacII	CCGCGG	2 cut(s)	374, 482
SatI	GCNGC	4 cut(s)	157, 190, 374, 482
Sau3AI	GATC	2 cut(s)	171, 222
Sau96I	GGNCC	3 cut(s)	422, 530, 560
SchI	GAGTC	1 cut(s)	295
ScrFI	CCNGG	2 cut(s)	134, 525
SduI	GDGCHC	2 cut(s)	234, 448
SexAI	ACCWGGT	1 cut(s)	132
SfaNI	GCATC	1 cut(s)	225
SfcI	CTRYAG	1 cut(s)	61
SfoI	GGCGCC	2 cut(s)	351, 459
Sfr303I	CCGCGG	2 cut(s)	374, 482
SgrBI	CCGCGG	2 cut(s)	374, 482
SinI	GGWCC	2 cut(s)	422, 530
Sse9I	AATT	1 cut(s)	89
SsiI	CCGC	7 cut(s)	324, 371, 373, 479, 481, 621, 646
SspDI	GGCGCC	2 cut(s)	349, 457
StyD4I	CCNGG	2 cut(s)	132, 523
TaaI	ACNGT	3 cut(s)	551, 557, 579
TaqI	TCGA	1 cut(s)	219
TasI	AATT	1 cut(s)	89
TauI	GCSGC	2 cut(s)	376, 484
TfiI	GAWTC	1 cut(s)	28
TscAI	CASTG	3 cut(s)	53, 562, 667
TseFI	GTSAC	2 cut(s)	16, 640
TseI	GCWGC	2 cut(s)	156, 189
Tsp45I	GTSAC	2 cut(s)	16, 640
TspGWI	ACGGA	2 cut(s)	420, 609
TspRI	CASTG	3 cut(s)	53, 562, 667
VpaK11BI	GGWCC	2 cut(s)	422, 530
XapI	RAATTY	1 cut(s)	89
XmiI	GTMKAC	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.