Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001902

Physical Location & Seq

Genomic Coordinates Forward (+)

12571774 .. 12575795

Gene Structure 4022 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G013210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGAACAGTCAGAGAAACGCCAAGCAACTCTAAGAATTCATGAATCTGAAGAAGCAGCCCTCATGGACCTTCTTAATTTCATGTATAGTAATACTTTGTCCATGACAACGGCACCTTTACTGTTGGATGTGCTAAAGGCTGCTGACAAATTTGCAGTTGCATCTTGCATGAGATATTGCAGTAGGTTATTGGGGCAATTACCTATGACTCGTGATTCTGCCTTGCTTTATTTGGACCTTCCCTCTAGTGTTCTGATGGTTGATGCAGTTCAGTCACTCACAGATACAGCAAAGAAGTTCCTTGCTGACCGCTACAGAGAACTAAGCAAGTTTGTGGATGAGGTGTTAAACTTGCCCCTTGCTGGTATTGAGGCTGTACTGTCTAGTGATGATCTCCAGGTTGCATCAGAGGATGCTATTTTTGATTTGGTTCTTAAGTGGGCACGGTTGCATTTCCGGAATGTCGAAGATCGACGAGAAGTCATTGCTTCACGCCTTGCTCGCCTCATTCGTTTTCCTTACATGTCCTGTCGAAAGCTTAGGAAGGTTCTAAGCTGCAATGATTTTGATCCTCAACTGGCATCAAAGATAGTGCTTGAGGCTTTATTTTATAAGTCTGAGACACCACACAGGCAGCGCTTCCTTGCTGTAGAGAATGCTAACGCCACCTATCGCGGCTTTGTGGATCGTTCCTACAAGTACAGGCCAGTGAAGTTAGTGGAATTTGAACTACCCCGTCCACAGTGTATTGTGTACCTCGATCTGAAGCGTGAAGAGTGTGCACGCTTGTTTCCAGCTGGTCGGGTGTACTCGCAGGCTTTTCACCTGGGTGGGCAGGGCTTTTTCTTGTCAGCCCATTGCAACATGGACCAACAGAACTCCTTTCAGTGCTTGGGGCTGTTTTTAGGGATGCAAGAGAAGGGATCAGTTAGTTTTGCAGTTGACTATGAATTCTCAGTAAGGGTAAAGCCCGGTGAGGAGTTTCTGAGTAAATACAAAGGTACTTACACTTTCACTGGAGGGAAGGCTGTTGGGTATAGGAACTTGCTTGCTACACCCTGGACAACATTCATGGCCGATGACAGCATCTATTTCATCAATTCTGTCCTTCATCTCCGGGCTGAGCTCACCATCAGGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0010114 GO:0031461 GO:0031463 GO:0032991 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0050896 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BACK BTB

Protein Analysis

380

Amino Acids

43.47

Weight (kDa)

8.31

Isoelectric Point (pI)

37.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB_KLHL33	PF21536	1 - 60	4.6e-06	Kelch-like protein 33-like, BTB/POZ domain
BACK	PF07707	90 - 183	1.3e-10	BTB And C-terminal Kelch

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46260 AT3G61600 AT3G61600
fragaria_vesca	FvH4_5g03751 FvH4_5g03751 FvH4_5g03751 FvH4_5g03751 FvH4_5g03751 FvH4_7g15752 FvH4_7g15752
malus_domestica	MD01G1074300.v1.1 MD07G1143200.v1.1 MD14G1117700.v1.1
prunus_persica	Prupe.2G182300_v2.0.a1 Prupe.2G182300_v2.0.a1 Prupe.5G112100_v2.0.a1 Prupe.5G112100_v2.0.a1 Prupe.5G112100_v2.0.a1
pyrus_communis	pycom06g09390 pycom07g14190
rosa_chinensis	RchiOBHm_Chr1g0358521 RchiOBHm_Chr7g0195841
rosa_laevigata	RLG00000004083 RLG00000027955
rosa_multiflora	Rmu_co8444369.1_g000001 Rmu_sc0001609.1_g000004 Rmu_sc0004016.1_g000020
rosa_roxburghii	Rroxscaffold_3G00260050 Rroxscaffold_4G00297840
rosa_rugosa	Rorug01G0262200 Rorug01G0262300 Rorug07G0026800 Rorug07G0026900 Rorug07G0027000 Rorug07G0027000 Rorug07G0027100
rosa_samantha	Rh1AG276900 Rh1BG243300 Rh1CG260500 Rh1DG271600 Rh7AG154600 Rh7BG156400 Rh7CG160100 Rh7DG155600
rosa_wichuraiana	Rw1G024620 Rw7G013210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	612
AccB1I	GGYRCC	1 cut(s)	112
AccII	CGCG	1 cut(s)	675
AccIII	TCCGGA	1 cut(s)	456
AciI	CCGC	2 cut(s)	310, 675
AclWI	GGATC	3 cut(s)	563, 693, 931
AcoI	YGGCCR	1 cut(s)	1074
AcsI	RAATTY	4 cut(s)	36, 149, 722, 950
AcuI	CTGAAG	2 cut(s)	69, 785
AfaI	GTAC	5 cut(s)	378, 701, 755, 809, 1003
AfeI	AGCGCT	1 cut(s)	638
AfiI	CCNNNNNNNGG	1 cut(s)	362
AflII	CTTAAG	1 cut(s)	434
AflIII	ACRYGT	1 cut(s)	522
AgsI	TTSAA	1 cut(s)	728
AhdI	GACNNNNNGTC	1 cut(s)	479
AjnI	CCWGG	3 cut(s)	396, 825, 1058
AleI	CACNNNNGTG	1 cut(s)	828
AluBI	AGCT	4 cut(s)	538, 555, 797, 1126
AluI	AGCT	4 cut(s)	538, 555, 797, 1126
Alw21I	GWGCWC	2 cut(s)	784, 1128
Alw26I	GTCTC	1 cut(s)	614
Alw44I	GTGCAC	1 cut(s)	780
AlwI	GGATC	3 cut(s)	563, 693, 931
Aor13HI	TCCGGA	1 cut(s)	456
Aor51HI	AGCGCT	1 cut(s)	638
AoxI	GGCC	2 cut(s)	704, 1074
ApaLI	GTGCAC	1 cut(s)	780
ApeKI	GCWGC	4 cut(s)	56, 140, 555, 634
ApoI	RAATTY	4 cut(s)	36, 149, 722, 950
AspLEI	GCGC	1 cut(s)	639
AspS9I	GGNCC	3 cut(s)	67, 235, 868
AsuC2I	CCSGG	2 cut(s)	972, 1118
AsuHPI	GGTGA	3 cut(s)	815, 986, 1120
AvaII	GGWCC	3 cut(s)	67, 235, 868
BaeGI	GKGCMC	2 cut(s)	445, 784
BanI	GGYRCC	1 cut(s)	112
BanII	GRGCYC	1 cut(s)	1128
BauI	CACGAG	1 cut(s)	210
Bbv12I	GWGCWC	2 cut(s)	784, 1128
BbvI	GCAGC	4 cut(s)	68, 127, 542, 646
BccI	CCATC	2 cut(s)	250, 1139
BceAI	ACGGC	1 cut(s)	126
BciT130I	CCWGG	3 cut(s)	398, 827, 1060
BcnI	CCSGG	2 cut(s)	972, 1118
BcoDI	GTCTC	1 cut(s)	614
BfaI	CTAG	2 cut(s)	246, 384
BfmI	CTRYAG	2 cut(s)	313, 648
BfoI	RGCGCY	1 cut(s)	640
BfrI	CTTAAG	1 cut(s)	434
BisI	GCNGC	5 cut(s)	57, 141, 556, 635, 676
BlpI	GCTNAGC	1 cut(s)	1122
BlsI	GCNGC	5 cut(s)	58, 142, 557, 636, 677
Bme1390I	CCNGG	5 cut(s)	398, 827, 972, 1060, 1118
Bme18I	GGWCC	3 cut(s)	67, 235, 868
BmeRI	GACNNNNNGTC	1 cut(s)	479
BmgT120I	GGNCC	3 cut(s)	67, 235, 868
BmiI	GGNNCC	1 cut(s)	114
BmrFI	CCNGG	5 cut(s)	398, 827, 972, 1060, 1118
BmsI	GCATC	7 cut(s)	170, 253, 403, 413, 590, 900, 1095
BpmI	CTGGAG	2 cut(s)	380, 1038
Bpu10I	CCTNAGC	1 cut(s)	539
Bpu1102I	GCTNAGC	1 cut(s)	1122
BpuEI	CTTGAG	1 cut(s)	617
BpuMI	CCSGG	2 cut(s)	972, 1118
BsaBI	GATNNNNATC	1 cut(s)	567
BsaJI	CCNNGG	2 cut(s)	826, 1058
BsaWI	WCCGGW	1 cut(s)	456
Bsc4I	CCNNNNNNNGG	1 cut(s)	362
Bse1I	ACTGG	3 cut(s)	582, 707, 1021
Bse3DI	GCAATG	3 cut(s)	483, 565, 856
Bse8I	GATNNNNATC	1 cut(s)	567
BseAI	TCCGGA	1 cut(s)	456
BseBI	CCWGG	3 cut(s)	398, 827, 1060
BseDI	CCNNGG	2 cut(s)	826, 1058
BseGI	GGATG	4 cut(s)	133, 343, 418, 915
BseJI	GATNNNNATC	1 cut(s)	567
BseLI	CCNNNNNNNGG	1 cut(s)	362
BseMI	GCAATG	3 cut(s)	483, 565, 856
BseMII	CTCAG	4 cut(s)	609, 969, 977, 1113
BseNI	ACTGG	3 cut(s)	582, 707, 1021
BseRI	GAGGAG	1 cut(s)	992
BseSI	GKGCMC	2 cut(s)	445, 784
BseXI	GCAGC	4 cut(s)	68, 127, 542, 646
Bsh1236I	CGCG	1 cut(s)	675
BshFI	GGCC	2 cut(s)	706, 1076
BshNI	GGYRCC	1 cut(s)	112
BsiHKAI	GWGCWC	2 cut(s)	784, 1128
BsiSI	CCGG	3 cut(s)	457, 972, 1117
BslI	CCNNNNNNNGG	1 cut(s)	362
BsmAI	GTCTC	1 cut(s)	614
BsmI	GAATGC	1 cut(s)	661
BsnI	GGCC	2 cut(s)	706, 1076
Bsp1286I	GDGCHC	3 cut(s)	445, 784, 1128
Bsp13I	TCCGGA	1 cut(s)	456
Bsp143I	GATC	6 cut(s)	391, 469, 568, 685, 760, 923
Bsp1720I	GCTNAGC	1 cut(s)	1122
BspACI	CCGC	2 cut(s)	310, 675
BspANI	GGCC	2 cut(s)	706, 1076
BspCNI	CTCAG	4 cut(s)	610, 968, 978, 1114
BspEI	TCCGGA	1 cut(s)	456
BspFNI	CGCG	1 cut(s)	675
BspHI	TCATGA	1 cut(s)	40
BspLI	GGNNCC	1 cut(s)	114
BspPI	GGATC	3 cut(s)	563, 693, 931
BspT107I	GGYRCC	1 cut(s)	112
BspTI	CTTAAG	1 cut(s)	434
BsrDI	GCAATG	3 cut(s)	483, 565, 856
BsrI	ACTGG	3 cut(s)	582, 707, 1021
BssECI	CCNNGG	2 cut(s)	826, 1058
BssMI	GATC	6 cut(s)	391, 469, 568, 685, 760, 923
BssSI	CACGAG	1 cut(s)	210
Bst2BI	CACGAG	1 cut(s)	210
Bst2UI	CCWGG	3 cut(s)	398, 827, 1060
Bst4CI	ACNGT	5 cut(s)	9, 123, 381, 447, 744
Bst6I	CTCTTC	1 cut(s)	768
BstAFI	CTTAAG	1 cut(s)	434
BstC8I	GCNNGC	4 cut(s)	502, 784, 816, 1050
BstDEI	CTNAG	8 cut(s)	32, 323, 539, 551, 618, 955, 986, 1122
BstF5I	GGATG	4 cut(s)	133, 343, 418, 915
BstFNI	CGCG	1 cut(s)	675
BstH2I	RGCGCY	1 cut(s)	640
BstHHI	GCGC	1 cut(s)	639
BstKTI	GATC	6 cut(s)	394, 472, 571, 688, 763, 926
BstMAI	GTCTC	1 cut(s)	614
BstMBI	GATC	6 cut(s)	391, 469, 568, 685, 760, 923
BstMWI	GCNNNNNNNGC	1 cut(s)	501
BstNI	CCWGG	3 cut(s)	398, 827, 1060
BstNSI	RCATGY	1 cut(s)	526
BstSCI	CCNGG	5 cut(s)	396, 825, 970, 1058, 1116
BstSFI	CTRYAG	2 cut(s)	313, 648
BstSLI	GKGCMC	2 cut(s)	445, 784
BstUI	CGCG	1 cut(s)	675
BstV1I	GCAGC	4 cut(s)	68, 127, 542, 646
BsuRI	GGCC	2 cut(s)	706, 1076
BtsCI	GGATG	4 cut(s)	133, 343, 418, 915
BtsIMutI	CAGTG	4 cut(s)	714, 749, 893, 1014
Cac8I	GCNNGC	4 cut(s)	502, 784, 816, 1050
CciI	TCATGA	1 cut(s)	40
CfoI	GCGC	1 cut(s)	639
Cfr13I	GGNCC	3 cut(s)	67, 235, 868
Csp6I	GTAC	5 cut(s)	377, 700, 754, 808, 1002
CviAII	CATG	8 cut(s)	41, 64, 82, 103, 169, 523, 865, 1072
CviQI	GTAC	5 cut(s)	377, 700, 754, 808, 1002
DdeI	CTNAG	8 cut(s)	32, 323, 539, 551, 618, 955, 986, 1122
DpnI	GATC	6 cut(s)	393, 471, 570, 687, 762, 925
DpnII	GATC	6 cut(s)	391, 469, 568, 685, 760, 923
DriI	GACNNNNNGTC	1 cut(s)	479
EaeI	YGGCCR	1 cut(s)	1074
Eam1104I	CTCTTC	1 cut(s)	768
Eam1105I	GACNNNNNGTC	1 cut(s)	479
EarI	CTCTTC	1 cut(s)	768
Ecl136II	GAGCTC	1 cut(s)	1126
Eco24I	GRGCYC	1 cut(s)	1128
Eco47I	GGWCC	3 cut(s)	67, 235, 868
Eco47III	AGCGCT	1 cut(s)	638
Eco53kI	GAGCTC	1 cut(s)	1126
Eco57I	CTGAAG	2 cut(s)	69, 785
EcoICRI	GAGCTC	1 cut(s)	1126
EcoRI	GAATTC	2 cut(s)	36, 950
EcoRII	CCWGG	3 cut(s)	396, 825, 1058
EcoT38I	GRGCYC	1 cut(s)	1128
FaeI	CATG	8 cut(s)	44, 67, 85, 106, 172, 526, 868, 1075
FatI	CATG	8 cut(s)	40, 63, 81, 102, 168, 522, 864, 1071
Fnu4HI	GCNGC	5 cut(s)	57, 141, 556, 635, 676
FokI	GGATG	4 cut(s)	140, 350, 425, 922
FriOI	GRGCYC	1 cut(s)	1128
Fsp4HI	GCNGC	5 cut(s)	57, 141, 556, 635, 676
FspBI	CTAG	2 cut(s)	246, 384
GlaI	GCGC	1 cut(s)	638
GluI	GCNGC	5 cut(s)	57, 141, 556, 635, 676
GsuI	CTGGAG	2 cut(s)	380, 1038
HaeII	RGCGCY	1 cut(s)	640
HaeIII	GGCC	2 cut(s)	706, 1076
HapII	CCGG	3 cut(s)	457, 972, 1117
HhaI	GCGC	1 cut(s)	639
Hin1II	CATG	8 cut(s)	44, 67, 85, 106, 172, 526, 868, 1075
Hin6I	GCGC	1 cut(s)	637
HinP1I	GCGC	1 cut(s)	637
HincII	GTYRAC	1 cut(s)	943
HindII	GTYRAC	1 cut(s)	943
HindIII	AAGCTT	1 cut(s)	536
HinfI	GANTC	3 cut(s)	44, 208, 215
HpaII	CCGG	3 cut(s)	457, 972, 1117
HphI	GGTGA	3 cut(s)	815, 986, 1120
Hpy166II	GTNNAC	5 cut(s)	740, 754, 782, 808, 943
Hpy188I	TCNGA	7 cut(s)	13, 49, 255, 409, 619, 765, 987
Hpy188III	TCNNGA	3 cut(s)	41, 212, 457
Hpy8I	GTNNAC	5 cut(s)	740, 754, 782, 808, 943
Hpy99I	CGWCG	1 cut(s)	477
HpyAV	CCTTC	6 cut(s)	80, 248, 538, 913, 1018, 1118
HpyCH4III	ACNGT	5 cut(s)	9, 123, 381, 447, 744
HpyF10VI	GCNNNNNNNGC	1 cut(s)	501
HpyF3I	CTNAG	8 cut(s)	32, 323, 539, 551, 618, 955, 986, 1122
Hsp92II	CATG	8 cut(s)	44, 67, 85, 106, 172, 526, 868, 1075
HspAI	GCGC	1 cut(s)	637
Kpn2I	TCCGGA	1 cut(s)	456
Kzo9I	GATC	6 cut(s)	391, 469, 568, 685, 760, 923
Lsp1109I	GCAGC	4 cut(s)	68, 127, 542, 646
LweI	GCATC	7 cut(s)	170, 253, 403, 413, 590, 900, 1095
MaeI	CTAG	2 cut(s)	246, 384
MaeIII	GTNAC	1 cut(s)	273
MalI	GATC	6 cut(s)	393, 471, 570, 687, 762, 925
MboI	GATC	6 cut(s)	391, 469, 568, 685, 760, 923
MboII	GAAGA	3 cut(s)	62, 479, 785
MhlI	GDGCHC	3 cut(s)	445, 784, 1128
MluCI	AATT	7 cut(s)	36, 76, 149, 197, 722, 950, 1099
MlyI	GAGTC	1 cut(s)	202
MmeI	TCCRAC	1 cut(s)	105
MroI	TCCGGA	1 cut(s)	456
MseI	TTAA	3 cut(s)	75, 347, 435
MslI	CAYNNNNRTG	1 cut(s)	828
MspA1I	CMGCKG	1 cut(s)	797
MspCI	CTTAAG	1 cut(s)	434
MspI	CCGG	3 cut(s)	457, 972, 1117
MspR9I	CCNGG	5 cut(s)	398, 827, 972, 1060, 1118
Mva1269I	GAATGC	1 cut(s)	661
MvaI	CCWGG	3 cut(s)	398, 827, 1060
MvnI	CGCG	1 cut(s)	675
MwoI	GCNNNNNNNGC	1 cut(s)	501
NciI	CCSGG	2 cut(s)	972, 1118
NdeII	GATC	6 cut(s)	391, 469, 568, 685, 760, 923
NlaIII	CATG	8 cut(s)	44, 67, 85, 106, 172, 526, 868, 1075
NlaIV	GGNNCC	1 cut(s)	114
NmuCI	GTSAC	1 cut(s)	273
NspI	RCATGY	1 cut(s)	526
OliI	CACNNNNGTG	1 cut(s)	828
PagI	TCATGA	1 cut(s)	40
PciI	ACATGT	1 cut(s)	522
PcsI	WCGNNNNNNNCGW	1 cut(s)	508
PctI	GAATGC	1 cut(s)	661
PfeI	GAWTC	2 cut(s)	44, 215
PkrI	GCNGC	5 cut(s)	58, 142, 557, 636, 677
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
PscI	ACATGT	1 cut(s)	522
PsiI	TTATAA	1 cut(s)	612
Psp124BI	GAGCTC	1 cut(s)	1128
Psp6I	CCWGG	3 cut(s)	396, 825, 1058
PspGI	CCWGG	3 cut(s)	396, 825, 1058
PspN4I	GGNNCC	1 cut(s)	114
PspPI	GGNCC	3 cut(s)	67, 235, 868
PvuII	CAGCTG	1 cut(s)	797
RsaI	GTAC	5 cut(s)	378, 701, 755, 809, 1003
RsaNI	GTAC	5 cut(s)	377, 700, 754, 808, 1002
RseI	CAYNNNNRTG	1 cut(s)	828
SacI	GAGCTC	1 cut(s)	1128
SaqAI	TTAA	3 cut(s)	75, 347, 435
SatI	GCNGC	5 cut(s)	57, 141, 556, 635, 676
Sau3AI	GATC	6 cut(s)	391, 469, 568, 685, 760, 923
Sau96I	GGNCC	3 cut(s)	67, 235, 868
SchI	GAGTC	1 cut(s)	202
ScrFI	CCNGG	5 cut(s)	398, 827, 972, 1060, 1118
SduI	GDGCHC	3 cut(s)	445, 784, 1128
SfaNI	GCATC	7 cut(s)	170, 253, 403, 413, 590, 900, 1095
SfcI	CTRYAG	2 cut(s)	313, 648
SinI	GGWCC	3 cut(s)	67, 235, 868
SmiMI	CAYNNNNRTG	1 cut(s)	828
SmlI	CTYRAG	2 cut(s)	434, 596
SmoI	CTYRAG	2 cut(s)	434, 596
Sse9I	AATT	7 cut(s)	36, 76, 149, 197, 722, 950, 1099
SsiI	CCGC	2 cut(s)	310, 675
SspMI	CTAG	2 cut(s)	246, 384
SstI	GAGCTC	1 cut(s)	1128
StyD4I	CCNGG	5 cut(s)	396, 825, 970, 1058, 1116
TaaI	ACNGT	5 cut(s)	9, 123, 381, 447, 744
TaqI	TCGA	4 cut(s)	465, 472, 532, 759
TasI	AATT	7 cut(s)	36, 76, 149, 197, 722, 950, 1099
TatI	WGTACW	3 cut(s)	376, 699, 807
TauI	GCSGC	1 cut(s)	678
TfiI	GAWTC	2 cut(s)	44, 215
Tru1I	TTAA	3 cut(s)	75, 347, 435
Tru9I	TTAA	3 cut(s)	75, 347, 435
TscAI	CASTG	4 cut(s)	714, 749, 893, 1021
TseFI	GTSAC	1 cut(s)	273
TseI	GCWGC	4 cut(s)	56, 140, 555, 634
Tsp45I	GTSAC	1 cut(s)	273
TspDTI	ATGAA	7 cut(s)	29, 57, 70, 963, 1060, 1084, 1100
TspRI	CASTG	4 cut(s)	714, 749, 893, 1021
Vha464I	CTTAAG	1 cut(s)	434
VneI	GTGCAC	1 cut(s)	780
VpaK11BI	GGWCC	3 cut(s)	67, 235, 868
XapI	RAATTY	4 cut(s)	36, 149, 722, 950
XceI	RCATGY	1 cut(s)	526
XspI	CTAG	2 cut(s)	246, 384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.