Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0001902

Physical Location & Seq

Genomic Coordinates Forward (+)

16143438 .. 16145455

Gene Structure 2018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g14190.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGGTTGAAGAGTCACCTTCAGGGGATGAAGCTGCAAACAGCAATGACTCAGACTGGGGAATGGATTGCTCTACAGTTGTGAGAGTTAAAACATTGCACATTAGCTCTCCAATTTTGGCAGCCAAGAGTCCTTTTTTCTATAAGCTCTTTTCAAATGGGATGAGGGAGTCTGAACAGCGACATGTAACCTTGCGAATCAGTGCGTCCGAAGAAGCTGCCCTCATGGAGCTCCTAAATTTTATGTACAGCAATACCTTATCCACCACCACAGCTCCTGCTCTACTGGATGTGTTGATGGCTGCTGACAAATTTGAGGTAGCTTCATGCATGAGGTATTGCAGCCGGCTACTGAGGAATATGACCATGACACCTGAATCTGCGTTGCTTTATCTAGAGCTTCCTTCTAGTGTCTTAATGGCTGACGCAGTCCAGGCATTGACTGATGCTGCAAAGCAGTACCTTGCTGTCCGTTACAAGGACATAAGCAAGTTTTTCGAAGAGGTGATGGCCTTACCCCTAGCTGGAATAGAGGCAATTATATCCAGTGATGAACTCCAGGTTGCATCAGAGGATGCTGTATATGACTTTGTGTTGAAATGGTCTAGGACTCACTACCCTAAGTTGGAGGAAAGGCGAGAAATCTTGGGTGCTCGACTTGCACGCTACATTCGCTTCCCATACATGACTTGTCGAAAGCTGAAAAAGGTCTTAACCTGTAATGATTTTGACCACGAAGCTGCGTCCAAGCTTGTCCTTGAGTCTCTTTTCTTCAAGGCTGAGGCTCCGCACAGGCAGCGAATTCTGGCAGCAGAAGAGTCTGCTACCTTGAATCGTCGGTTTGTGGAGCGGGCATACAAGTATCGCCCTGTTAAGGTGGTGGAATTTGATCTTCCCAGACAGCAGTGTGTGGTGTACCTGGACTTGAAGCGAGAGGAGTGTGCAAATTTATTCCCATCCGGACGGGTATATTCTCAGGCATTCCACTTGGGTGGGCAAGGGTTCTTCCTCTCTGCGCATTGCAACATGGACCAGCAGAGTTCTTTCCATTGTTTTGGGCTGTTTTTGGGGATGCAGGAAAAAGGGTCAGTGAGTTTTGCAGTGGACTACGAATTTGCAGCGAGATCAAAGCCGACTGAGGAATTCATTAGCAAATACAAAGGCAACTACACATTTACAGGGGGCAAGGCAGTAGGGTACCGTAACTTATTTGCCATACCATGGACTTCATTCATGGCCGAGGATAGTCCTTTCTTCATAAATGGCGTCCTTCATCTTCGAGCGGAGCTTACCATCAAACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0010114 GO:0031461 GO:0031463 GO:0032991 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0050896 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

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Protein Analysis

434

Amino Acids

49.16

Weight (kDa)

6.4

Isoelectric Point (pI)

48.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46260 AT3G61600 AT3G61600
fragaria_vesca	FvH4_5g03751 FvH4_5g03751 FvH4_5g03751 FvH4_5g03751 FvH4_5g03751 FvH4_7g15752 FvH4_7g15752
malus_domestica	MD01G1074300.v1.1 MD07G1143200.v1.1 MD14G1117700.v1.1
prunus_persica	Prupe.2G182300_v2.0.a1 Prupe.2G182300_v2.0.a1 Prupe.5G112100_v2.0.a1 Prupe.5G112100_v2.0.a1 Prupe.5G112100_v2.0.a1
pyrus_communis	pycom06g09390 pycom07g14190
rosa_chinensis	RchiOBHm_Chr1g0358521 RchiOBHm_Chr7g0195841
rosa_laevigata	RLG00000004083 RLG00000027955
rosa_multiflora	Rmu_co8444369.1_g000001 Rmu_sc0001609.1_g000004 Rmu_sc0004016.1_g000020
rosa_roxburghii	Rroxscaffold_3G00260050 Rroxscaffold_4G00297840
rosa_rugosa	Rorug01G0262200 Rorug01G0262300 Rorug07G0026800 Rorug07G0026900 Rorug07G0027000 Rorug07G0027000 Rorug07G0027100
rosa_samantha	Rh1AG276900 Rh1BG243300 Rh1CG260500 Rh1DG271600 Rh7AG154600 Rh7BG156400 Rh7CG160100 Rh7DG155600
rosa_wichuraiana	Rw1G024620 Rw7G013210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1014
Acc65I	GGTACC	1 cut(s)	1194
AccB1I	GGYRCC	1 cut(s)	1194
AccB7I	CCANNNNNTGG	1 cut(s)	1218
AccBSI	CCGCTC	2 cut(s)	847, 1280
AccIII	TCCGGA	1 cut(s)	956
AciI	CCGC	3 cut(s)	785, 847, 1280
AcoI	YGGCCR	1 cut(s)	1233
AcsI	RAATTY	7 cut(s)	235, 308, 798, 881, 943, 1109, 1139
AcyI	GRCGYC	1 cut(s)	1263
AfaI	GTAC	4 cut(s)	245, 458, 914, 1196
AfiI	CCNNNNNNNGG	5 cut(s)	475, 521, 622, 871, 1218
AflIII	ACRYGT	1 cut(s)	181
AgsI	TTSAA	6 cut(s)	8, 153, 595, 772, 829, 925
AjnI	CCWGG	3 cut(s)	429, 555, 915
AleI	CACNNNNGTG	1 cut(s)	987
Alw21I	GWGCWC	2 cut(s)	231, 652
Alw26I	GTCTC	1 cut(s)	765
AlwNI	CAGNNNCTG	1 cut(s)	275
Aor13HI	TCCGGA	1 cut(s)	956
AoxI	GGCC	2 cut(s)	507, 1233
ApoI	RAATTY	7 cut(s)	235, 308, 798, 881, 943, 1109, 1139
ArsI	GACNNNNNNTTYG	2 cut(s)	1094, 1126
Asp718I	GGTACC	1 cut(s)	1194
AspLEI	GCGC	1 cut(s)	1015
AspS9I	GGNCC	1 cut(s)	1027
AsuHPI	GGTGA	2 cut(s)	6, 514
AsuII	TTCGAA	1 cut(s)	495
AvaII	GGWCC	1 cut(s)	1027
BanI	GGYRCC	1 cut(s)	1194
BanII	GRGCYC	1 cut(s)	231
Bbv12I	GWGCWC	2 cut(s)	231, 652
BbvCI	CCTCAGC	1 cut(s)	777
BccI	CCATC	4 cut(s)	289, 499, 961, 1298
BcgI	CGANNNNNNTGC	4 cut(s)	197, 231, 475, 509
BciT130I	CCWGG	3 cut(s)	431, 557, 917
BcoDI	GTCTC	1 cut(s)	765
BfaI	CTAG	4 cut(s)	392, 405, 518, 603
BfmI	CTRYAG	1 cut(s)	72
Bme1390I	CCNGG	3 cut(s)	431, 557, 917
Bme18I	GGWCC	1 cut(s)	1027
BmgT120I	GGNCC	1 cut(s)	1027
BmiI	GGNNCC	2 cut(s)	783, 1196
BmrFI	CCNGG	3 cut(s)	431, 557, 917
BmrI	ACTGGG	1 cut(s)	64
BmsI	GCATC	4 cut(s)	433, 562, 572, 1059
BmuI	ACTGGG	1 cut(s)	64
BpmI	CTGGAG	1 cut(s)	539
Bpu10I	CCTNAGC	1 cut(s)	777
Bpu14I	TTCGAA	1 cut(s)	495
BpuEI	CTTGAG	1 cut(s)	776
BsaHI	GRCGYC	1 cut(s)	1263
BsaJI	CCNNGG	2 cut(s)	1217, 1236
BsaWI	WCCGGW	1 cut(s)	956
BsaXI	ACNNNNNCTCC	2 cut(s)	256, 286
Bsc4I	CCNNNNNNNGG	5 cut(s)	475, 521, 622, 871, 1218
Bse118I	RCCGGY	1 cut(s)	342
Bse1I	ACTGG	3 cut(s)	59, 288, 543
Bse3DI	GCAATG	3 cut(s)	49, 92, 1015
BseAI	TCCGGA	1 cut(s)	956
BseBI	CCWGG	3 cut(s)	431, 557, 917
BseDI	CCNNGG	2 cut(s)	1217, 1236
BseGI	GGATG	6 cut(s)	31, 165, 292, 577, 953, 1074
BseLI	CCNNNNNNNGG	5 cut(s)	475, 521, 622, 871, 1218
BseMI	GCAATG	3 cut(s)	49, 92, 1015
BseMII	CTCAG	5 cut(s)	63, 341, 768, 986, 1125
BseNI	ACTGG	3 cut(s)	59, 288, 543
BseRI	GAGGAG	1 cut(s)	947
BshFI	GGCC	2 cut(s)	509, 1235
BshNI	GGYRCC	1 cut(s)	1194
BsiHKAI	GWGCWC	2 cut(s)	231, 652
BsiSI	CCGG	2 cut(s)	343, 957
BslI	CCNNNNNNNGG	5 cut(s)	475, 521, 622, 871, 1218
BsmAI	GTCTC	1 cut(s)	765
BsmI	GAATGC	1 cut(s)	977
BsnI	GGCC	2 cut(s)	509, 1235
Bsp119I	TTCGAA	1 cut(s)	495
Bsp1286I	GDGCHC	2 cut(s)	231, 652
Bsp13I	TCCGGA	1 cut(s)	956
Bsp1407I	TGTACA	1 cut(s)	243
Bsp143I	GATC	2 cut(s)	886, 1121
Bsp19I	CCATGG	1 cut(s)	1217
BspACI	CCGC	3 cut(s)	785, 847, 1280
BspANI	GGCC	2 cut(s)	509, 1235
BspCNI	CTCAG	5 cut(s)	62, 342, 769, 985, 1126
BspEI	TCCGGA	1 cut(s)	956
BspLI	GGNNCC	2 cut(s)	783, 1196
BspT104I	TTCGAA	1 cut(s)	495
BspT107I	GGYRCC	1 cut(s)	1194
BsrBI	CCGCTC	2 cut(s)	847, 1280
BsrDI	GCAATG	3 cut(s)	49, 92, 1015
BsrFI	RCCGGY	1 cut(s)	342
BsrGI	TGTACA	1 cut(s)	243
BsrI	ACTGG	3 cut(s)	59, 288, 543
BssAI	RCCGGY	1 cut(s)	342
BssECI	CCNNGG	2 cut(s)	1217, 1236
BssMI	GATC	2 cut(s)	886, 1121
BssNI	GRCGYC	1 cut(s)	1263
BssT1I	CCWWGG	1 cut(s)	1217
Bst2UI	CCWGG	3 cut(s)	431, 557, 917
Bst4CI	ACNGT	2 cut(s)	76, 1199
Bst6I	CTCTTC	3 cut(s)	3, 492, 807
BstACI	GRCGYC	1 cut(s)	1263
BstAUI	TGTACA	1 cut(s)	243
BstBI	TTCGAA	1 cut(s)	495
BstC8I	GCNNGC	3 cut(s)	344, 661, 849
BstDEI	CTNAG	6 cut(s)	49, 350, 618, 777, 972, 1134
BstDSI	CCRYGG	1 cut(s)	1217
BstF5I	GGATG	6 cut(s)	31, 165, 292, 577, 953, 1074
BstHHI	GCGC	1 cut(s)	1015
BstKTI	GATC	2 cut(s)	889, 1124
BstMAI	GTCTC	1 cut(s)	765
BstMBI	GATC	2 cut(s)	886, 1121
BstMWI	GCNNNNNNNGC	4 cut(s)	431, 656, 669, 793
BstNI	CCWGG	3 cut(s)	431, 557, 917
BstNSI	RCATGY	1 cut(s)	185
BstSCI	CCNGG	3 cut(s)	429, 555, 915
BstSFI	CTRYAG	1 cut(s)	72
BstXI	CCANNNNNNTGG	2 cut(s)	989, 1052
BsuRI	GGCC	2 cut(s)	509, 1235
BtgI	CCRYGG	1 cut(s)	1217
BtsCI	GGATG	6 cut(s)	31, 165, 292, 577, 953, 1074
BtsI	GCAGTG	2 cut(s)	908, 1104
BtsIMutI	CAGTG	6 cut(s)	205, 550, 908, 1092, 1104, 1297
Cac8I	GCNNGC	3 cut(s)	344, 661, 849
CaiI	CAGNNNCTG	1 cut(s)	275
CfoI	GCGC	1 cut(s)	1015
Cfr10I	RCCGGY	1 cut(s)	342
Cfr13I	GGNCC	1 cut(s)	1027
CseI	GACGC	4 cut(s)	192, 431, 729, 1252
Csp6I	GTAC	4 cut(s)	244, 457, 913, 1195
CviAII	CATG	9 cut(s)	182, 223, 324, 328, 364, 682, 1024, 1218, 1231
CviQI	GTAC	4 cut(s)	244, 457, 913, 1195
DdeI	CTNAG	6 cut(s)	49, 350, 618, 777, 972, 1134
DpnI	GATC	2 cut(s)	888, 1123
DpnII	GATC	2 cut(s)	886, 1121
EaeI	YGGCCR	1 cut(s)	1233
Eam1104I	CTCTTC	3 cut(s)	3, 492, 807
EarI	CTCTTC	3 cut(s)	3, 492, 807
Ecl136II	GAGCTC	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	1217
Eco24I	GRGCYC	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	1027
Eco53kI	GAGCTC	1 cut(s)	229
EcoICRI	GAGCTC	1 cut(s)	229
EcoRI	GAATTC	2 cut(s)	798, 1139
EcoRII	CCWGG	3 cut(s)	429, 555, 915
EcoT14I	CCWWGG	1 cut(s)	1217
EcoT22I	ATGCAT	1 cut(s)	329
EcoT38I	GRGCYC	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	1217
FaeI	CATG	9 cut(s)	185, 226, 327, 331, 367, 685, 1027, 1221, 1234
FatI	CATG	9 cut(s)	181, 222, 323, 327, 363, 681, 1023, 1217, 1230
FauI	CCCGC	1 cut(s)	840
FokI	GGATG	6 cut(s)	38, 172, 299, 584, 940, 1081
FriOI	GRGCYC	1 cut(s)	231
FspBI	CTAG	4 cut(s)	392, 405, 518, 603
FspI	TGCGCA	1 cut(s)	1014
GlaI	GCGC	1 cut(s)	1014
GsuI	CTGGAG	1 cut(s)	539
HaeIII	GGCC	2 cut(s)	509, 1235
HapII	CCGG	2 cut(s)	343, 957
HgaI	GACGC	4 cut(s)	192, 431, 729, 1252
HhaI	GCGC	1 cut(s)	1015
Hin1I	GRCGYC	1 cut(s)	1263
Hin1II	CATG	9 cut(s)	185, 226, 327, 331, 367, 685, 1027, 1221, 1234
Hin6I	GCGC	1 cut(s)	1013
HinP1I	GCGC	1 cut(s)	1013
HindIII	AAGCTT	1 cut(s)	746
HpaII	CCGG	2 cut(s)	343, 957
HphI	GGTGA	2 cut(s)	6, 514
Hpy166II	GTNNAC	2 cut(s)	913, 1102
Hpy188I	TCNGA	4 cut(s)	52, 172, 208, 568
Hpy188III	TCNNGA	2 cut(s)	392, 957
Hpy8I	GTNNAC	2 cut(s)	913, 1102
Hpy99I	CGWCG	1 cut(s)	837
HpyAV	CCTTC	3 cut(s)	27, 411, 1277
HpyCH4III	ACNGT	2 cut(s)	76, 1199
HpyF10VI	GCNNNNNNNGC	4 cut(s)	431, 656, 669, 793
HpyF3I	CTNAG	6 cut(s)	49, 350, 618, 777, 972, 1134
Hsp92I	GRCGYC	1 cut(s)	1263
Hsp92II	CATG	9 cut(s)	185, 226, 327, 331, 367, 685, 1027, 1221, 1234
HspAI	GCGC	1 cut(s)	1013
Kpn2I	TCCGGA	1 cut(s)	956
KpnI	GGTACC	1 cut(s)	1198
KroI	GCCGGC	1 cut(s)	342
KroNI	GCCGGC	1 cut(s)	344
Kzo9I	GATC	2 cut(s)	886, 1121
LmnI	GCTCC	6 cut(s)	226, 234, 277, 787, 844, 1282
LweI	GCATC	4 cut(s)	433, 562, 572, 1059
MaeI	CTAG	4 cut(s)	392, 405, 518, 603
MaeIII	GTNAC	4 cut(s)	12, 184, 470, 1199
MalI	GATC	2 cut(s)	888, 1123
MbiI	CCGCTC	2 cut(s)	847, 1280
MboI	GATC	2 cut(s)	886, 1121
MboII	GAAGA	9 cut(s)	20, 221, 509, 760, 824, 881, 994, 1243, 1265
MhlI	GDGCHC	2 cut(s)	231, 652
MluCI	AATT	9 cut(s)	111, 235, 308, 534, 798, 881, 943, 1109, 1139
MlyI	GAGTC	7 cut(s)	20, 41, 136, 176, 601, 767, 824
MmeI	TCCRAC	1 cut(s)	603
Mph1103I	ATGCAT	1 cut(s)	329
MroI	TCCGGA	1 cut(s)	956
MroNI	GCCGGC	1 cut(s)	342
MseI	TTAA	4 cut(s)	87, 413, 710, 870
MslI	CAYNNNNRTG	1 cut(s)	987
MspI	CCGG	2 cut(s)	343, 957
MspR9I	CCNGG	3 cut(s)	431, 557, 917
Mva1269I	GAATGC	1 cut(s)	977
MvaI	CCWGG	3 cut(s)	431, 557, 917
MwoI	GCNNNNNNNGC	4 cut(s)	431, 656, 669, 793
NaeI	GCCGGC	1 cut(s)	344
NcoI	CCATGG	1 cut(s)	1217
NdeII	GATC	2 cut(s)	886, 1121
NgoMIV	GCCGGC	1 cut(s)	342
NlaIII	CATG	9 cut(s)	185, 226, 327, 331, 367, 685, 1027, 1221, 1234
NlaIV	GGNNCC	2 cut(s)	783, 1196
NmeAIII	GCCGAG	1 cut(s)	1261
NmuCI	GTSAC	1 cut(s)	12
NsbI	TGCGCA	1 cut(s)	1014
NsiI	ATGCAT	1 cut(s)	329
NspI	RCATGY	1 cut(s)	185
NspV	TTCGAA	1 cut(s)	495
OliI	CACNNNNGTG	1 cut(s)	987
PciI	ACATGT	1 cut(s)	181
PctI	GAATGC	1 cut(s)	977
PdiI	GCCGGC	1 cut(s)	344
PfeI	GAWTC	3 cut(s)	195, 374, 829
PflFI	GACNNNGTC	1 cut(s)	425
PflMI	CCANNNNNTGG	1 cut(s)	1218
PleI	GAGTC	7 cut(s)	19, 41, 135, 175, 601, 766, 823
PpsI	GAGTC	7 cut(s)	19, 41, 135, 175, 601, 766, 823
PscI	ACATGT	1 cut(s)	181
Psp124BI	GAGCTC	1 cut(s)	231
Psp6I	CCWGG	3 cut(s)	429, 555, 915
PspGI	CCWGG	3 cut(s)	429, 555, 915
PspN4I	GGNNCC	2 cut(s)	783, 1196
PspPI	GGNCC	1 cut(s)	1027
PstNI	CAGNNNCTG	1 cut(s)	275
PsyI	GACNNNGTC	1 cut(s)	425
RsaI	GTAC	4 cut(s)	245, 458, 914, 1196
RsaNI	GTAC	4 cut(s)	244, 457, 913, 1195
RseI	CAYNNNNRTG	1 cut(s)	987
SacI	GAGCTC	1 cut(s)	231
SaqAI	TTAA	4 cut(s)	87, 413, 710, 870
Sau3AI	GATC	2 cut(s)	886, 1121
Sau96I	GGNCC	1 cut(s)	1027
SchI	GAGTC	7 cut(s)	20, 41, 136, 176, 601, 767, 824
ScrFI	CCNGG	3 cut(s)	431, 557, 917
SduI	GDGCHC	2 cut(s)	231, 652
SfaNI	GCATC	4 cut(s)	433, 562, 572, 1059
SfcI	CTRYAG	1 cut(s)	72
SfuI	TTCGAA	1 cut(s)	495
SinI	GGWCC	1 cut(s)	1027
SmiMI	CAYNNNNRTG	1 cut(s)	987
SmlI	CTYRAG	1 cut(s)	755
SmoI	CTYRAG	1 cut(s)	755
Sse9I	AATT	9 cut(s)	111, 235, 308, 534, 798, 881, 943, 1109, 1139
SsiI	CCGC	3 cut(s)	785, 847, 1280
SspMI	CTAG	4 cut(s)	392, 405, 518, 603
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	3 cut(s)	429, 555, 915
StyI	CCWWGG	1 cut(s)	1217
TaaI	ACNGT	2 cut(s)	76, 1199
TaqI	TCGA	4 cut(s)	495, 652, 691, 1276
TasI	AATT	9 cut(s)	111, 235, 308, 534, 798, 881, 943, 1109, 1139
TatI	WGTACW	1 cut(s)	243
TfiI	GAWTC	3 cut(s)	195, 374, 829
Tru1I	TTAA	4 cut(s)	87, 413, 710, 870
Tru9I	TTAA	4 cut(s)	87, 413, 710, 870
TscAI	CASTG	5 cut(s)	205, 550, 908, 1092, 1104
TseFI	GTSAC	1 cut(s)	12
Tsp45I	GTSAC	1 cut(s)	12
TspDTI	ATGAA	8 cut(s)	42, 312, 564, 1132, 1215, 1219, 1243, 1259
TspGWI	ACGGA	1 cut(s)	458
TspRI	CASTG	5 cut(s)	205, 550, 908, 1092, 1104
Tth111I	GACNNNGTC	1 cut(s)	425
Van91I	CCANNNNNTGG	1 cut(s)	1218
VpaK11BI	GGWCC	1 cut(s)	1027
XapI	RAATTY	7 cut(s)	235, 308, 798, 881, 943, 1109, 1139
XbaI	TCTAGA	1 cut(s)	391
XceI	RCATGY	1 cut(s)	185
XspI	CTAG	4 cut(s)	392, 405, 518, 603
Zsp2I	ATGCAT	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.