Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8444369.1

Orthogroup ID

OG0001902

Physical Location & Seq

Genomic Coordinates Forward (+)

19 .. 1439

Gene Structure 1421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8444369.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

atgcagctcttttcaaatgggatgagggaatctgaacagcgacacgtgaccttgagaatcaatgcctcagaagaagctgccctgatggagctccttaatttcatgtacagtagtaccttaaacacgaccacagctcctgggttgctggatgtgctgatggctgcagacaagtttgaggttgcttcttgcatgagacattgcagccggctgttgcggaatattcccatgacaccggagtctgctttgctttatctagagcttccttccagtgtcctaatggctgaagcagtccaggcattgactgatgcagcaaagcagtaccttgctgctcgttataaggacgtaagcaagtttatagatgaggtgatggccttgcccctagctggaatcgaggcaattgtatcgagtgatgatctccaagttgcatcagaggatgctgtatatgactttgtcttgaaatggtcgaggactcactacccaaaactggaggaaaggcgagaaatcttgggttctcgacttgcacgctacattcgcttcccttacatgacttgtcgaaagctaaagaaagtcttgacatgtaatgattttgaccatgaagctgcatccaagcttgtgcttgaggctctattcttcaaggctgaggccccacatcggcagcgaatccttgcagcagaggagtctgctaccctgaatcgacgctttgtggaacgggcatacaagtatcgcccagttaaggtggtggaatttgaccttcccaggcagcagtgtgtggtgtacctggacctgaagcgcgaggagtgtgcaaatttattcccatctggacgggtgtattctcaggcattccacttgggtggacaaggattcttcctctctgcgcattgcaacatggaccagcagagttctttccattgttttgggctgtttttggggatgcaggagaaggggtcagtgagttttgcggtggactacgagtttgcggcaagatcaaagccaacggaggaatttattagcaaatacaaaggcaactacacttttactgggggaaaggcggttggctacagaaacttatttgccataccatggactaacttcatggccgaggatagtctttacttcatcaatggtgtactccatctaagagcggagcttactatcaggcactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0010114 GO:0031461 GO:0031463 GO:0032991 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0050896 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BACK BTB

Protein Analysis

387

Amino Acids

44.17

Weight (kDa)

7.13

Isoelectric Point (pI)

43.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46260 AT3G61600 AT3G61600
fragaria_vesca	FvH4_5g03751 FvH4_5g03751 FvH4_5g03751 FvH4_5g03751 FvH4_5g03751 FvH4_7g15752 FvH4_7g15752
malus_domestica	MD01G1074300.v1.1 MD07G1143200.v1.1 MD14G1117700.v1.1
prunus_persica	Prupe.2G182300_v2.0.a1 Prupe.2G182300_v2.0.a1 Prupe.5G112100_v2.0.a1 Prupe.5G112100_v2.0.a1 Prupe.5G112100_v2.0.a1
pyrus_communis	pycom06g09390 pycom07g14190
rosa_chinensis	RchiOBHm_Chr1g0358521 RchiOBHm_Chr7g0195841
rosa_laevigata	RLG00000004083 RLG00000027955
rosa_multiflora	Rmu_co8444369.1_g000001 Rmu_sc0001609.1_g000004 Rmu_sc0004016.1_g000020
rosa_roxburghii	Rroxscaffold_3G00260050 Rroxscaffold_4G00297840
rosa_rugosa	Rorug01G0262200 Rorug01G0262300 Rorug07G0026800 Rorug07G0026900 Rorug07G0027000 Rorug07G0027000 Rorug07G0027100
rosa_samantha	Rh1AG276900 Rh1BG243300 Rh1CG260500 Rh1DG271600 Rh7AG154600 Rh7BG156400 Rh7CG160100 Rh7DG155600
rosa_wichuraiana	Rw1G024620 Rw7G013210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	336
AasI	GACNNNNNNGTC	1 cut(s)	235
Acc16I	TGCGCA	1 cut(s)	876
AccB7I	CCANNNNNTGG	1 cut(s)	1080
AccBSI	CCGCTC	1 cut(s)	1142
AccII	CGCG	1 cut(s)	792
AciI	CCGC	5 cut(s)	214, 959, 977, 1049, 1142
AcoI	YGGCCR	1 cut(s)	1095
AcsI	RAATTY	3 cut(s)	743, 805, 1001
AcuI	CTGAAG	2 cut(s)	303, 806
AcvI	CACGTG	1 cut(s)	46
AfaI	GTAC	5 cut(s)	107, 115, 320, 776, 1128
AfiI	CCNNNNNNNGG	5 cut(s)	383, 484, 651, 733, 1080
AflIII	ACRYGT	2 cut(s)	43, 575
AgsI	TTSAA	3 cut(s)	15, 457, 634
AjnI	CCWGG	4 cut(s)	136, 291, 755, 777
AleI	CACNNNNGTG	1 cut(s)	849
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	1 cut(s)	187
AlwNI	CAGNNNCTG	2 cut(s)	137, 1161
AoxI	GGCC	3 cut(s)	369, 642, 1095
ApoI	RAATTY	3 cut(s)	743, 805, 1001
ArsI	GACNNNNNNTTYG	2 cut(s)	956, 988
AspLEI	GCGC	2 cut(s)	792, 877
AspS9I	GGNCC	3 cut(s)	643, 781, 889
AsuHPI	GGTGA	1 cut(s)	376
AvaII	GGWCC	2 cut(s)	781, 889
BaeI	ACNNNNGTAYC	2 cut(s)	97, 130
BanII	GRGCYC	1 cut(s)	93
BbrPI	CACGTG	1 cut(s)	46
Bbv12I	GWGCWC	1 cut(s)	93
BbvCI	CCTCAGC	1 cut(s)	639
BccI	CCATC	5 cut(s)	79, 151, 361, 823, 1140
BcgI	CGANNNNNNTGC	4 cut(s)	384, 418, 782, 816
BciT130I	CCWGG	4 cut(s)	138, 293, 757, 779
BcoDI	GTCTC	1 cut(s)	187
BfaI	CTAG	2 cut(s)	254, 380
BfmI	CTRYAG	2 cut(s)	162, 1057
Bme1390I	CCNGG	4 cut(s)	138, 293, 757, 779
Bme18I	GGWCC	2 cut(s)	781, 889
BmgT120I	GGNCC	3 cut(s)	643, 781, 889
BmiI	GGNNCC	1 cut(s)	645
BmrFI	CCNGG	4 cut(s)	138, 293, 757, 779
BmrI	ACTGGG	2 cut(s)	722, 1047
BmsI	GCATC	5 cut(s)	295, 424, 434, 611, 921
BmuI	ACTGGG	2 cut(s)	722, 1047
BpmI	CTGGAG	1 cut(s)	506
Bpu10I	CCTNAGC	1 cut(s)	639
BpuEI	CTTGAG	2 cut(s)	73, 638
BsaAI	YACGTR	1 cut(s)	46
BsaJI	CCNNGG	4 cut(s)	137, 755, 1079, 1098
BsaWI	WCCGGW	1 cut(s)	232
BsaXI	ACNNNNNCTCC	4 cut(s)	118, 148, 929, 959
Bsc4I	CCNNNNNNNGG	5 cut(s)	383, 484, 651, 733, 1080
Bse118I	RCCGGY	1 cut(s)	204
Bse1I	ACTGG	4 cut(s)	267, 489, 728, 1042
Bse3DI	GCAATG	2 cut(s)	196, 877
BseBI	CCWGG	4 cut(s)	138, 293, 757, 779
BseDI	CCNNGG	4 cut(s)	137, 755, 1079, 1098
BseGI	GGATG	5 cut(s)	27, 154, 439, 602, 936
BseLI	CCNNNNNNNGG	5 cut(s)	383, 484, 651, 733, 1080
BseMI	GCAATG	2 cut(s)	196, 877
BseMII	CTCAG	3 cut(s)	81, 630, 848
BseNI	ACTGG	4 cut(s)	267, 489, 728, 1042
BseRI	GAGGAG	2 cut(s)	689, 809
Bsh1236I	CGCG	1 cut(s)	792
BshFI	GGCC	3 cut(s)	371, 644, 1097
BsiHKAI	GWGCWC	1 cut(s)	93
BsiSI	CCGG	2 cut(s)	205, 233
BslI	CCNNNNNNNGG	5 cut(s)	383, 484, 651, 733, 1080
BsmAI	GTCTC	1 cut(s)	187
BsmI	GAATGC	1 cut(s)	839
BsnI	GGCC	3 cut(s)	371, 644, 1097
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp1407I	TGTACA	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	412, 983
Bsp19I	CCATGG	1 cut(s)	1079
BspACI	CCGC	5 cut(s)	214, 959, 977, 1049, 1142
BspANI	GGCC	3 cut(s)	371, 644, 1097
BspCNI	CTCAG	3 cut(s)	80, 631, 847
BspFNI	CGCG	1 cut(s)	792
BspLI	GGNNCC	1 cut(s)	645
BspMAI	CTGCAG	1 cut(s)	166
BsrBI	CCGCTC	1 cut(s)	1142
BsrDI	GCAATG	2 cut(s)	196, 877
BsrFI	RCCGGY	1 cut(s)	204
BsrGI	TGTACA	1 cut(s)	105
BsrI	ACTGG	4 cut(s)	267, 489, 728, 1042
BssAI	RCCGGY	1 cut(s)	204
BssECI	CCNNGG	4 cut(s)	137, 755, 1079, 1098
BssMI	GATC	2 cut(s)	412, 983
BssT1I	CCWWGG	1 cut(s)	1079
Bst2UI	CCWGG	4 cut(s)	138, 293, 757, 779
Bst4CI	ACNGT	1 cut(s)	110
BstAUI	TGTACA	1 cut(s)	105
BstBAI	YACGTR	1 cut(s)	46
BstC8I	GCNNGC	2 cut(s)	206, 523
BstDEI	CTNAG	4 cut(s)	67, 639, 834, 1136
BstDSI	CCRYGG	1 cut(s)	1079
BstF5I	GGATG	5 cut(s)	27, 154, 439, 602, 936
BstFNI	CGCG	1 cut(s)	792
BstHHI	GCGC	2 cut(s)	792, 877
BstKTI	GATC	2 cut(s)	415, 986
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	2 cut(s)	412, 983
BstMWI	GCNNNNNNNGC	3 cut(s)	151, 293, 531
BstNI	CCWGG	4 cut(s)	138, 293, 757, 779
BstNSI	RCATGY	1 cut(s)	579
BstSCI	CCNGG	4 cut(s)	136, 291, 755, 777
BstSFI	CTRYAG	2 cut(s)	162, 1057
BstUI	CGCG	1 cut(s)	792
BstXI	CCANNNNNNTGG	2 cut(s)	851, 914
BsuRI	GGCC	3 cut(s)	371, 644, 1097
BtgI	CCRYGG	1 cut(s)	1079
BtsCI	GGATG	5 cut(s)	27, 154, 439, 602, 936
BtsI	GCAGTG	1 cut(s)	770
BtsIMutI	CAGTG	4 cut(s)	274, 770, 954, 1159
Cac8I	GCNNGC	2 cut(s)	206, 523
CaiI	CAGNNNCTG	2 cut(s)	137, 1161
CfoI	GCGC	2 cut(s)	792, 877
Cfr10I	RCCGGY	1 cut(s)	204
Cfr13I	GGNCC	3 cut(s)	643, 781, 889
CseI	GACGC	1 cut(s)	705
Csp6I	GTAC	5 cut(s)	106, 114, 319, 775, 1127
CviAII	CATG	9 cut(s)	103, 190, 226, 544, 576, 593, 886, 1080, 1093
CviQI	GTAC	5 cut(s)	106, 114, 319, 775, 1127
DdeI	CTNAG	4 cut(s)	67, 639, 834, 1136
DpnI	GATC	2 cut(s)	414, 985
DpnII	GATC	2 cut(s)	412, 983
DrdI	GACNNNNNNGTC	1 cut(s)	235
DseDI	GACNNNNNNGTC	1 cut(s)	235
EaeI	YGGCCR	1 cut(s)	1095
Ecl136II	GAGCTC	1 cut(s)	91
Eco130I	CCWWGG	1 cut(s)	1079
Eco24I	GRGCYC	1 cut(s)	93
Eco47I	GGWCC	2 cut(s)	781, 889
Eco53kI	GAGCTC	1 cut(s)	91
Eco57I	CTGAAG	2 cut(s)	303, 806
Eco72I	CACGTG	1 cut(s)	46
EcoICRI	GAGCTC	1 cut(s)	91
EcoO109I	RGGNCCY	1 cut(s)	643
EcoRII	CCWGG	4 cut(s)	136, 291, 755, 777
EcoT14I	CCWWGG	1 cut(s)	1079
EcoT38I	GRGCYC	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	1079
FaeI	CATG	9 cut(s)	106, 193, 229, 547, 579, 596, 889, 1083, 1096
FalI	AAGNNNNNCTT	2 cut(s)	554, 586
FatI	CATG	9 cut(s)	102, 189, 225, 543, 575, 592, 885, 1079, 1092
FokI	GGATG	5 cut(s)	34, 161, 446, 589, 943
FriOI	GRGCYC	1 cut(s)	93
FspBI	CTAG	2 cut(s)	254, 380
FspI	TGCGCA	1 cut(s)	876
GlaI	GCGC	2 cut(s)	791, 876
GsuI	CTGGAG	1 cut(s)	506
HaeIII	GGCC	3 cut(s)	371, 644, 1097
HapII	CCGG	2 cut(s)	205, 233
HgaI	GACGC	1 cut(s)	705
HhaI	GCGC	2 cut(s)	792, 877
Hin1II	CATG	9 cut(s)	106, 193, 229, 547, 579, 596, 889, 1083, 1096
Hin6I	GCGC	2 cut(s)	790, 875
HinP1I	GCGC	2 cut(s)	790, 875
HindIII	AAGCTT	1 cut(s)	608
HinfI	GANTC	9 cut(s)	29, 57, 236, 387, 469, 660, 677, 691, 861
HpaII	CCGG	2 cut(s)	205, 233
HphI	GGTGA	1 cut(s)	376
Hpy166II	GTNNAC	4 cut(s)	775, 854, 964, 1127
Hpy188I	TCNGA	3 cut(s)	34, 70, 430
Hpy188III	TCNNGA	5 cut(s)	254, 454, 513, 571, 819
Hpy8I	GTNNAC	4 cut(s)	775, 854, 964, 1127
Hpy99I	CGWCG	1 cut(s)	699
HpyAV	CCTTC	3 cut(s)	273, 761, 934
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4IV	ACGT	2 cut(s)	45, 342
HpyF10VI	GCNNNNNNNGC	3 cut(s)	151, 293, 531
HpyF3I	CTNAG	4 cut(s)	67, 639, 834, 1136
HpySE526I	ACGT	2 cut(s)	45, 342
Hsp92II	CATG	9 cut(s)	106, 193, 229, 547, 579, 596, 889, 1083, 1096
HspAI	GCGC	2 cut(s)	790, 875
KroI	GCCGGC	1 cut(s)	204
KroNI	GCCGGC	1 cut(s)	206
Kzo9I	GATC	2 cut(s)	412, 983
LmnI	GCTCC	4 cut(s)	88, 96, 139, 1144
LweI	GCATC	5 cut(s)	295, 424, 434, 611, 921
MaeI	CTAG	2 cut(s)	254, 380
MaeII	ACGT	2 cut(s)	45, 342
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	2 cut(s)	414, 985
MbiI	CCGCTC	1 cut(s)	1142
MboI	GATC	2 cut(s)	412, 983
MboII	GAAGA	3 cut(s)	83, 622, 856
MfeI	CAATTG	1 cut(s)	396
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	5 cut(s)	97, 396, 743, 805, 1001
MlyI	GAGTC	3 cut(s)	245, 463, 686
MroNI	GCCGGC	1 cut(s)	204
MseI	TTAA	3 cut(s)	96, 119, 732
MslI	CAYNNNNRTG	1 cut(s)	849
MspI	CCGG	2 cut(s)	205, 233
MspR9I	CCNGG	4 cut(s)	138, 293, 757, 779
MunI	CAATTG	1 cut(s)	396
Mva1269I	GAATGC	1 cut(s)	839
MvaI	CCWGG	4 cut(s)	138, 293, 757, 779
MvnI	CGCG	1 cut(s)	792
MwoI	GCNNNNNNNGC	3 cut(s)	151, 293, 531
NaeI	GCCGGC	1 cut(s)	206
NcoI	CCATGG	1 cut(s)	1079
NdeII	GATC	2 cut(s)	412, 983
NgoMIV	GCCGGC	1 cut(s)	204
NlaIII	CATG	9 cut(s)	106, 193, 229, 547, 579, 596, 889, 1083, 1096
NlaIV	GGNNCC	1 cut(s)	645
NmeAIII	GCCGAG	1 cut(s)	1123
NmuCI	GTSAC	1 cut(s)	46
NsbI	TGCGCA	1 cut(s)	876
NspI	RCATGY	1 cut(s)	579
OliI	CACNNNNGTG	1 cut(s)	849
PciI	ACATGT	1 cut(s)	575
PctI	GAATGC	1 cut(s)	839
PdiI	GCCGGC	1 cut(s)	206
PfeI	GAWTC	6 cut(s)	29, 57, 387, 660, 691, 861
PflFI	GACNNNGTC	1 cut(s)	449
PflMI	CCANNNNNTGG	1 cut(s)	1080
PleI	GAGTC	3 cut(s)	244, 463, 685
PmaCI	CACGTG	1 cut(s)	46
PmlI	CACGTG	1 cut(s)	46
PpsI	GAGTC	3 cut(s)	244, 463, 685
Ppu21I	YACGTR	1 cut(s)	46
PscI	ACATGT	1 cut(s)	575
PsiI	TTATAA	1 cut(s)	336
Psp124BI	GAGCTC	1 cut(s)	93
Psp6I	CCWGG	4 cut(s)	136, 291, 755, 777
PspCI	CACGTG	1 cut(s)	46
PspGI	CCWGG	4 cut(s)	136, 291, 755, 777
PspN4I	GGNNCC	1 cut(s)	645
PspPI	GGNCC	3 cut(s)	643, 781, 889
PstI	CTGCAG	1 cut(s)	166
PstNI	CAGNNNCTG	2 cut(s)	137, 1161
PsyI	GACNNNGTC	1 cut(s)	449
RsaI	GTAC	5 cut(s)	107, 115, 320, 776, 1128
RsaNI	GTAC	5 cut(s)	106, 114, 319, 775, 1127
RseI	CAYNNNNRTG	1 cut(s)	849
SacI	GAGCTC	1 cut(s)	93
SaqAI	TTAA	3 cut(s)	96, 119, 732
Sau3AI	GATC	2 cut(s)	412, 983
Sau96I	GGNCC	3 cut(s)	643, 781, 889
SchI	GAGTC	3 cut(s)	245, 463, 686
ScrFI	CCNGG	4 cut(s)	138, 293, 757, 779
SduI	GDGCHC	1 cut(s)	93
SfaNI	GCATC	5 cut(s)	295, 424, 434, 611, 921
SfcI	CTRYAG	2 cut(s)	162, 1057
SinI	GGWCC	2 cut(s)	781, 889
SmiMI	CAYNNNNRTG	1 cut(s)	849
SmlI	CTYRAG	2 cut(s)	52, 617
SmoI	CTYRAG	2 cut(s)	52, 617
Sse9I	AATT	5 cut(s)	97, 396, 743, 805, 1001
SsiI	CCGC	5 cut(s)	214, 959, 977, 1049, 1142
SspI	AATATT	1 cut(s)	220
SspMI	CTAG	2 cut(s)	254, 380
SstI	GAGCTC	1 cut(s)	93
StyD4I	CCNGG	4 cut(s)	136, 291, 755, 777
StyI	CCWWGG	1 cut(s)	1079
TaaI	ACNGT	1 cut(s)	110
TaiI	ACGT	2 cut(s)	48, 345
TaqI	TCGA	6 cut(s)	390, 404, 464, 514, 553, 694
TasI	AATT	5 cut(s)	97, 396, 743, 805, 1001
TatI	WGTACW	2 cut(s)	105, 1126
TauI	GCSGC	1 cut(s)	980
TfiI	GAWTC	6 cut(s)	29, 57, 387, 660, 691, 861
Tru1I	TTAA	3 cut(s)	96, 119, 732
Tru9I	TTAA	3 cut(s)	96, 119, 732
TscAI	CASTG	3 cut(s)	274, 770, 954
TseFI	GTSAC	1 cut(s)	46
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	4 cut(s)	91, 609, 1081, 1105
TspGWI	ACGGA	1 cut(s)	1010
TspRI	CASTG	3 cut(s)	274, 770, 954
Tth111I	GACNNNGTC	1 cut(s)	449
Van91I	CCANNNNNTGG	1 cut(s)	1080
VpaK11BI	GGWCC	2 cut(s)	781, 889
XapI	RAATTY	3 cut(s)	743, 805, 1001
XbaI	TCTAGA	1 cut(s)	253
XceI	RCATGY	1 cut(s)	579
XcmI	CCANNNNNNNNNTGG	1 cut(s)	274
XspI	CTAG	2 cut(s)	254, 380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.