pycom07g14270

Microtubule-associated protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
16207319 .. 16207564
246 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 246 bp
ATGGACGGCGACGAGCTCATAAACCTCTTGCACCGCTTAGATCTGGTCAAGGTTGAGCTCAATGGACCCGAGAATGAAGTCAGAGATGCGAATACGGCTCCATCCGCAACTTTTCTCCAGATTTGTGGTCGATTTTATCGAGATTTGCCGTCAAATCTGGTAGGTGGGGCACGCTCCTTCGAGCTCACGGGGTCGTCAAAGAGGATGAGGGTTGAGTGGGTGGAGTCGAAGAGGGAGGGGGAATGA

Protein Analysis

82

Amino Acids

9.14

Weight (kDa)

5.15

Isoelectric Point (pI)

36.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021270)

Species Orthologous Gene IDs
pyrus_communis pycom07g14270
rosa_multiflora Rmu_sc0016337.1_g000004
rosa_roxburghii Rroxscaffold_6G00390450 Rroxscaffold_7G00186680
rosa_samantha Rh3CG356400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 34, 105
AluBI AGCT 3 cut(s) 16, 58, 184
AluI AGCT 3 cut(s) 16, 58, 184
Alw21I GWGCWC 3 cut(s) 18, 60, 186
Ama87I CYCGRG 1 cut(s) 68
AspS9I GGNCC 1 cut(s) 65
AvaI CYCGRG 1 cut(s) 68
AvaII GGWCC 1 cut(s) 65
BaeGI GKGCMC 1 cut(s) 172
BanII GRGCYC 3 cut(s) 18, 60, 186
Bbv12I GWGCWC 3 cut(s) 18, 60, 186
BccI CCATC 1 cut(s) 109
BceAI ACGGC 3 cut(s) 22, 111, 133
BglII AGATCT 1 cut(s) 40
Bme18I GGWCC 1 cut(s) 65
BmeT110I CYCGRG 1 cut(s) 68
BmgT120I GGNCC 1 cut(s) 65
BmiI GGNNCC 2 cut(s) 67, 99
BmsI GCATC 1 cut(s) 76
BpmI CTGGAG 1 cut(s) 101
BseGI GGATG 2 cut(s) 101, 210
BseSI GKGCMC 1 cut(s) 172
BsiHKAI GWGCWC 3 cut(s) 18, 60, 186
BsiHKCI CYCGRG 1 cut(s) 68
BsoBI CYCGRG 1 cut(s) 68
Bsp1286I GDGCHC 4 cut(s) 18, 60, 172, 186
Bsp143I GATC 1 cut(s) 40
BspACI CCGC 2 cut(s) 34, 105
BspLI GGNNCC 2 cut(s) 67, 99
BssMI GATC 1 cut(s) 40
Bst6I CTCTTC 1 cut(s) 224
BstC8I GCNNGC 1 cut(s) 172
BstDEI CTNAG 1 cut(s) 37
BstF5I GGATG 2 cut(s) 101, 210
BstKTI GATC 1 cut(s) 43
BstMBI GATC 1 cut(s) 40
BstMWI GCNNNNNNNGC 2 cut(s) 95, 104
BstSLI GKGCMC 1 cut(s) 172
BstX2I RGATCY 1 cut(s) 40
BstXI CCANNNNNNTGG 1 cut(s) 125
BstYI RGATCY 1 cut(s) 40
BtsCI GGATG 2 cut(s) 101, 210
Cac8I GCNNGC 1 cut(s) 172
Cfr13I GGNCC 1 cut(s) 65
CviJI RGCY 4 cut(s) 16, 58, 98, 184
CviKI_1 RGCY 4 cut(s) 16, 58, 98, 184
DdeI CTNAG 1 cut(s) 37
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 224
EarI CTCTTC 1 cut(s) 224
Ecl136II GAGCTC 3 cut(s) 16, 58, 184
Eco24I GRGCYC 3 cut(s) 18, 60, 186
Eco47I GGWCC 1 cut(s) 65
Eco53kI GAGCTC 3 cut(s) 16, 58, 184
Eco88I CYCGRG 1 cut(s) 68
EcoICRI GAGCTC 3 cut(s) 16, 58, 184
EcoT38I GRGCYC 3 cut(s) 18, 60, 186
FaiI YATR 1 cut(s) 20
FokI GGATG 2 cut(s) 88, 217
FriOI GRGCYC 3 cut(s) 18, 60, 186
GsuI CTGGAG 1 cut(s) 101
HinfI GANTC 1 cut(s) 224
Hpy188I TCNGA 1 cut(s) 83
Hpy188III TCNNGA 2 cut(s) 118, 140
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 1 cut(s) 187
HpyCH4V TGCA 1 cut(s) 31
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 104
HpyF3I CTNAG 1 cut(s) 37
Kzo9I GATC 1 cut(s) 40
LmnI GCTCC 2 cut(s) 103, 179
LpnPI CCDG 3 cut(s) 29, 131, 143
LweI GCATC 1 cut(s) 76
MalI GATC 1 cut(s) 42
MboI GATC 1 cut(s) 40
MboII GAAGA 1 cut(s) 241
MflI RGATCY 1 cut(s) 40
MhlI GDGCHC 4 cut(s) 18, 60, 172, 186
MlyI GAGTC 1 cut(s) 233
MnlI CCTC 5 cut(s) 35, 195, 201, 225, 229
MwoI GCNNNNNNNGC 2 cut(s) 95, 104
NdeII GATC 1 cut(s) 40
NlaIV GGNNCC 2 cut(s) 67, 99
PcsI WCGNNNNNNNCGW 1 cut(s) 136
PleI GAGTC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 232
Psp124BI GAGCTC 3 cut(s) 18, 60, 186
PspN4I GGNNCC 2 cut(s) 67, 99
PspPI GGNCC 1 cut(s) 65
PsuI RGATCY 1 cut(s) 40
SacI GAGCTC 3 cut(s) 18, 60, 186
Sau3AI GATC 1 cut(s) 40
Sau96I GGNCC 1 cut(s) 65
SchI GAGTC 1 cut(s) 233
SduI GDGCHC 4 cut(s) 18, 60, 172, 186
SetI ASST 6 cut(s) 18, 27, 54, 60, 166, 186
SfaNI GCATC 1 cut(s) 76
SinI GGWCC 1 cut(s) 65
SsiI CCGC 2 cut(s) 34, 105
SstI GAGCTC 3 cut(s) 18, 60, 186
TaqI TCGA 4 cut(s) 130, 139, 180, 227
TspDTI ATGAA 1 cut(s) 90
VpaK11BI GGWCC 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.