Rh3CG356400

Microtubule-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0021270
Physical Location & Seq
Reverse (-)
43680641 .. 43703851
23211 bp
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UTR
Exon/CDS
Intron
Rh3CG356400.1

Sequence Viewer

Length: 204 bp
ATGGACGACGAGTTCATTAACCTCCTGCACGGCTTGGATCCGGTCAAGGTGGAACTCAATCGCCTCGAGAATGAAGTCAGAGATTCTGGGTTTCGTTGTGGTTTCTTTAATATGGTGGTCAATCTTGGTGGTTCTGTACGGAGAATAAATCAAGAATCGTGGAGGAACAACGATATGGGCGTGACTGCGCGAGGAAGCATTTGA

Protein Analysis

67

Amino Acids

7.64

Weight (kDa)

5.18

Isoelectric Point (pI)

26.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAP70 PF07058 3 - 29 2.4e-08 Microtubule-associated protein 70
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0021270)

Species Orthologous Gene IDs
pyrus_communis pycom07g14270
rosa_multiflora Rmu_sc0016337.1_g000004
rosa_roxburghii Rroxscaffold_6G00390450 Rroxscaffold_7G00186680
rosa_samantha Rh3CG356400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 190
AclWI GGATC 2 cut(s) 32, 45
AfaI GTAC 1 cut(s) 138
AloI GAACNNNNNNTCC 1 cut(s) 28
AlwI GGATC 2 cut(s) 32, 45
Ama87I CYCGRG 1 cut(s) 65
AspLEI GCGC 1 cut(s) 190
AvaI CYCGRG 1 cut(s) 65
BamHI GGATCC 1 cut(s) 37
BceAI ACGGC 1 cut(s) 46
BmeT110I CYCGRG 1 cut(s) 65
BmiI GGNNCC 1 cut(s) 39
BsaWI WCCGGW 1 cut(s) 40
BsgI GTGCAG 1 cut(s) 11
Bsh1236I CGCG 1 cut(s) 190
BsiHKCI CYCGRG 1 cut(s) 65
BsiSI CCGG 1 cut(s) 41
BsoBI CYCGRG 1 cut(s) 65
Bsp143I GATC 1 cut(s) 37
BspFNI CGCG 1 cut(s) 190
BspLI GGNNCC 1 cut(s) 39
BspPI GGATC 2 cut(s) 32, 45
BssMI GATC 1 cut(s) 37
BstFNI CGCG 1 cut(s) 190
BstHHI GCGC 1 cut(s) 190
BstKTI GATC 1 cut(s) 40
BstMBI GATC 1 cut(s) 37
BstUI CGCG 1 cut(s) 190
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
CfoI GCGC 1 cut(s) 190
Csp6I GTAC 1 cut(s) 137
CspCI CAANNNNNGTGG 4 cut(s) 109, 140, 144, 175
CviJI RGCY 1 cut(s) 33
CviKI_1 RGCY 1 cut(s) 33
CviQI GTAC 1 cut(s) 137
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
Eco88I CYCGRG 1 cut(s) 65
FaiI YATR 2 cut(s) 113, 176
GlaI GCGC 1 cut(s) 189
HapII CCGG 1 cut(s) 41
HhaI GCGC 1 cut(s) 190
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HinfI GANTC 2 cut(s) 83, 155
HpaII CCGG 1 cut(s) 41
Hpy188I TCNGA 1 cut(s) 80
Hpy188III TCNNGA 2 cut(s) 67, 152
Hpy99I CGWCG 1 cut(s) 11
HpyCH4V TGCA 1 cut(s) 28
HspAI GCGC 1 cut(s) 188
Kzo9I GATC 1 cut(s) 37
LpnPI CCDG 3 cut(s) 38, 54, 72
MaeIII GTNAC 1 cut(s) 181
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MflI RGATCY 1 cut(s) 37
MnlI CCTC 4 cut(s) 32, 74, 156, 185
MseI TTAA 2 cut(s) 18, 108
MspI CCGG 1 cut(s) 41
MvnI CGCG 1 cut(s) 190
NdeII GATC 1 cut(s) 37
NlaIV GGNNCC 1 cut(s) 39
NmuCI GTSAC 1 cut(s) 181
PaeR7I CTCGAG 1 cut(s) 65
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PfeI GAWTC 2 cut(s) 83, 155
PspN4I GGNNCC 1 cut(s) 39
PsuI RGATCY 1 cut(s) 37
RsaI GTAC 1 cut(s) 138
RsaNI GTAC 1 cut(s) 137
SaqAI TTAA 2 cut(s) 18, 108
Sau3AI GATC 1 cut(s) 37
SetI ASST 2 cut(s) 24, 51
Sfr274I CTCGAG 1 cut(s) 65
SlaI CTCGAG 1 cut(s) 65
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
TaqI TCGA 1 cut(s) 66
TfiI GAWTC 2 cut(s) 83, 155
Tru1I TTAA 2 cut(s) 18, 108
Tru9I TTAA 2 cut(s) 18, 108
TseFI GTSAC 1 cut(s) 181
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 2 cut(s) 4, 87
TspGWI ACGGA 1 cut(s) 154
XhoI CTCGAG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.