Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016337.1

Orthogroup ID

OG0021270

Physical Location & Seq

Genomic Coordinates Reverse (-)

16640 .. 18160

Gene Structure 1521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016337.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

atggacgacgacgagatcattaacctcctgcacggctcggatccggtcaaggtggagctcaatcgcctcgagaatgaagtcagaggtgcaaatgcggctcgatctactgccattgaaaatcaattaatggagcactatatagaggggagatcagatcaatgcgaagggaaaagagctccaaaagcttcaaggcttttgacctccgacccgcaacggaacccgattggaaatcctccatccggtcacgatgtggtgatgcaccggtctcatattcgattcctctccttactacggtcctacctccagacttgttttgctcgattgatgggagaggaaggagaatcgaagctcaaaagattcgggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006996 GO:0007010 GO:0007275 GO:0007389 GO:0008017 GO:0008092 GO:0008150 GO:0009832 GO:0009987 GO:0010005 GO:0010051 GO:0015630 GO:0015631 GO:0016043 GO:0030863 GO:0030981 GO:0032501 GO:0032502 GO:0042546 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048856 GO:0055028 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MAP70

Protein Analysis

121

Amino Acids

13.67

Weight (kDa)

6.51

Isoelectric Point (pI)

60.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021270)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g14270
rosa_multiflora	Rmu_sc0016337.1_g000004
rosa_roxburghii	Rroxscaffold_6G00390450 Rroxscaffold_7G00186680
rosa_samantha	Rh3CG356400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	95, 209
AclWI	GGATC	2 cut(s)	35, 48
AdeI	CACNNNGTG	1 cut(s)	250
AfiI	CCNNNNNNNGG	2 cut(s)	239, 291
AgeI	ACCGGT	1 cut(s)	261
AgsI	TTSAA	2 cut(s)	116, 189
AluBI	AGCT	4 cut(s)	58, 176, 185, 349
AluI	AGCT	4 cut(s)	58, 176, 185, 349
Alw21I	GWGCWC	3 cut(s)	60, 135, 178
Alw26I	GTCTC	1 cut(s)	270
AlwI	GGATC	2 cut(s)	35, 48
Ama87I	CYCGRG	1 cut(s)	68
AseI	ATTAAT	1 cut(s)	125
AsiGI	ACCGGT	1 cut(s)	261
AspS9I	GGNCC	1 cut(s)	294
AsuHPI	GGTGA	1 cut(s)	265
AvaI	CYCGRG	1 cut(s)	68
AvaII	GGWCC	1 cut(s)	294
BamHI	GGATCC	1 cut(s)	40
BanII	GRGCYC	2 cut(s)	60, 178
Bbv12I	GWGCWC	3 cut(s)	60, 135, 178
BccI	CCATC	2 cut(s)	244, 319
BceAI	ACGGC	1 cut(s)	49
BcoDI	GTCTC	1 cut(s)	270
BisI	GCNGC	1 cut(s)	96
BlsI	GCNGC	1 cut(s)	97
Bme18I	GGWCC	1 cut(s)	294
BmeT110I	CYCGRG	1 cut(s)	68
BmgT120I	GGNCC	1 cut(s)	294
BmiI	GGNNCC	2 cut(s)	42, 218
BmsI	GCATC	1 cut(s)	246
BpmI	CTGGAG	1 cut(s)	287
BsaI	GGTCTC	1 cut(s)	270
BsaWI	WCCGGW	3 cut(s)	43, 239, 261
Bsc4I	CCNNNNNNNGG	2 cut(s)	239, 291
Bse118I	RCCGGY	1 cut(s)	261
BseGI	GGATG	1 cut(s)	236
BseLI	CCNNNNNNNGG	2 cut(s)	239, 291
BsgI	GTGCAG	1 cut(s)	14
BshTI	ACCGGT	1 cut(s)	261
BsiHKAI	GWGCWC	3 cut(s)	60, 135, 178
BsiHKCI	CYCGRG	1 cut(s)	68
BsiSI	CCGG	3 cut(s)	44, 240, 262
BslI	CCNNNNNNNGG	2 cut(s)	239, 291
BsmAI	GTCTC	1 cut(s)	270
Bso31I	GGTCTC	1 cut(s)	270
BsoBI	CYCGRG	1 cut(s)	68
Bsp1286I	GDGCHC	3 cut(s)	60, 135, 178
Bsp143I	GATC	5 cut(s)	15, 40, 101, 149, 154
BspACI	CCGC	2 cut(s)	95, 209
BspLI	GGNNCC	2 cut(s)	42, 218
BspPI	GGATC	2 cut(s)	35, 48
BspTNI	GGTCTC	1 cut(s)	270
BsrFI	RCCGGY	1 cut(s)	261
BssAI	RCCGGY	1 cut(s)	261
BssMI	GATC	5 cut(s)	15, 40, 101, 149, 154
Bst4CI	ACNGT	1 cut(s)	294
BstF5I	GGATG	1 cut(s)	236
BstKTI	GATC	5 cut(s)	18, 43, 104, 152, 157
BstMAI	GTCTC	1 cut(s)	270
BstMBI	GATC	5 cut(s)	15, 40, 101, 149, 154
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 182
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
BtsCI	GGATG	1 cut(s)	236
Cfr10I	RCCGGY	1 cut(s)	261
Cfr13I	GGNCC	1 cut(s)	294
CspAI	ACCGGT	1 cut(s)	261
CviJI	RGCY	7 cut(s)	36, 58, 98, 176, 185, 193, 349
CviKI_1	RGCY	7 cut(s)	36, 58, 98, 176, 185, 193, 349
DpnI	GATC	5 cut(s)	17, 42, 103, 151, 156
DpnII	GATC	5 cut(s)	15, 40, 101, 149, 154
DraIII	CACNNNGTG	1 cut(s)	250
Ecl136II	GAGCTC	2 cut(s)	58, 176
Eco24I	GRGCYC	2 cut(s)	60, 178
Eco31I	GGTCTC	1 cut(s)	270
Eco47I	GGWCC	1 cut(s)	294
Eco53kI	GAGCTC	2 cut(s)	58, 176
Eco88I	CYCGRG	1 cut(s)	68
EcoICRI	GAGCTC	2 cut(s)	58, 176
EcoT38I	GRGCYC	2 cut(s)	60, 178
FaiI	YATR	3 cut(s)	138, 140, 270
FauI	CCCGC	1 cut(s)	216
Fnu4HI	GCNGC	1 cut(s)	96
FokI	GGATG	1 cut(s)	223
FriOI	GRGCYC	2 cut(s)	60, 178
Fsp4HI	GCNGC	1 cut(s)	96
GluI	GCNGC	1 cut(s)	96
GsuI	CTGGAG	1 cut(s)	287
HapII	CCGG	3 cut(s)	44, 240, 262
HindIII	AAGCTT	1 cut(s)	183
HinfI	GANTC	3 cut(s)	276, 341, 357
HpaII	CCGG	3 cut(s)	44, 240, 262
HphI	GGTGA	1 cut(s)	265
Hpy188I	TCNGA	4 cut(s)	40, 83, 154, 205
Hpy188III	TCNNGA	3 cut(s)	70, 245, 304
Hpy99I	CGWCG	2 cut(s)	11, 14
HpyAV	CCTTC	2 cut(s)	158, 329
HpyCH4III	ACNGT	1 cut(s)	294
HpyCH4V	TGCA	3 cut(s)	31, 89, 259
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 182
Kzo9I	GATC	5 cut(s)	15, 40, 101, 149, 154
LmnI	GCTCC	3 cut(s)	55, 130, 181
LpnPI	CCDG	5 cut(s)	41, 57, 253, 275, 317
LweI	GCATC	1 cut(s)	246
MaeIII	GTNAC	1 cut(s)	242
MalI	GATC	5 cut(s)	17, 42, 103, 151, 156
MboI	GATC	5 cut(s)	15, 40, 101, 149, 154
MflI	RGATCY	1 cut(s)	40
MhlI	GDGCHC	3 cut(s)	60, 135, 178
MluCI	AATT	1 cut(s)	122
MmeI	TCCRAC	1 cut(s)	228
MnlI	CCTC	9 cut(s)	35, 77, 77, 136, 211, 243, 290, 311, 325
MseI	TTAA	2 cut(s)	21, 125
MspI	CCGG	3 cut(s)	44, 240, 262
MwoI	GCNNNNNNNGC	2 cut(s)	95, 182
NdeII	GATC	5 cut(s)	15, 40, 101, 149, 154
NlaIV	GGNNCC	2 cut(s)	42, 218
NmuCI	GTSAC	1 cut(s)	242
PaeR7I	CTCGAG	1 cut(s)	68
PfeI	GAWTC	3 cut(s)	276, 341, 357
PinAI	ACCGGT	1 cut(s)	261
PkrI	GCNGC	1 cut(s)	97
PshBI	ATTAAT	1 cut(s)	125
Psp124BI	GAGCTC	2 cut(s)	60, 178
PspN4I	GGNNCC	2 cut(s)	42, 218
PspPI	GGNCC	1 cut(s)	294
PsuI	RGATCY	1 cut(s)	40
SacI	GAGCTC	2 cut(s)	60, 178
SaqAI	TTAA	2 cut(s)	21, 125
SatI	GCNGC	1 cut(s)	96
Sau3AI	GATC	5 cut(s)	15, 40, 101, 149, 154
Sau96I	GGNCC	1 cut(s)	294
SduI	GDGCHC	3 cut(s)	60, 135, 178
SetI	ASST	9 cut(s)	27, 54, 60, 88, 178, 187, 203, 303, 351
SfaNI	GCATC	1 cut(s)	246
Sfr274I	CTCGAG	1 cut(s)	68
SinI	GGWCC	1 cut(s)	294
SlaI	CTCGAG	1 cut(s)	68
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	1 cut(s)	122
SsiI	CCGC	2 cut(s)	95, 209
SstI	GAGCTC	2 cut(s)	60, 178
TaaI	ACNGT	1 cut(s)	294
TaqI	TCGA	5 cut(s)	69, 100, 274, 319, 344
TasI	AATT	1 cut(s)	122
TauI	GCSGC	1 cut(s)	98
TfiI	GAWTC	3 cut(s)	276, 341, 357
Tru1I	TTAA	2 cut(s)	21, 125
Tru9I	TTAA	2 cut(s)	21, 125
TseFI	GTSAC	1 cut(s)	242
Tsp45I	GTSAC	1 cut(s)	242
TspDTI	ATGAA	1 cut(s)	90
TspGWI	ACGGA	1 cut(s)	229
VpaK11BI	GGWCC	1 cut(s)	294
VspI	ATTAAT	1 cut(s)	125
XhoI	CTCGAG	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.