Rroxscaffold_7G00186680

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0021270
Physical Location & Seq
Forward (+)
25989008 .. 25991949
2942 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00186680.1

Sequence Viewer

Length: 435 bp
ATGGTGCTGCAGGGAGTCCACCTCGGTGGTCGGAGATCGGTGACGGAGGAGAGAGATTCCTCCAGATCCACTTTCTCTCTCCTCCCTCCCTCTTATTCTGGGTTTCGTTGTGGTTTCTTTAATATGGTGGTCAATCTTGGTGGTTCTGTACGGAGAATAAATCAAGAATCGTGGAGGAACAACGATATGGGTAGGCTATTTCTTTTCTTGCTCCTTATAGACCAAACCAAACCATATTCCTTGCTCATCAAAACGAGGGTCGGCCGCCGGCGGGAGATTAATATGGCGGACTGCGCGAGGACTAAAGCATTTGAAGATGCTCAATGCCCCCAAGTATTTTCAAAATATCAGTGGGCATTTGATGATTGTTATGAAATCAAGGGATCGCAGGGCATCTCTTGGAAATTGGATTGCATCGTGGAGGCCAAAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

16.54

Weight (kDa)

9.27

Isoelectric Point (pI)

52.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021270)

Species Orthologous Gene IDs
pyrus_communis pycom07g14270
rosa_multiflora Rmu_sc0016337.1_g000004
rosa_roxburghii Rroxscaffold_6G00390450 Rroxscaffold_7G00186680
rosa_samantha Rh3CG356400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 296
AciI CCGC 3 cut(s) 265, 271, 287
AclWI GGATC 2 cut(s) 60, 391
AcoI YGGCCR 1 cut(s) 262
AfaI GTAC 1 cut(s) 150
AfiI CCNNNNNNNGG 1 cut(s) 271
AgsI TTSAA 2 cut(s) 314, 342
AleI CACNNNNGTG 1 cut(s) 24
AlwI GGATC 2 cut(s) 60, 391
AoxI GGCC 2 cut(s) 262, 423
ApeKI GCWGC 1 cut(s) 7
ArsI GACNNNNNNTTYG 2 cut(s) 243, 275
AseI ATTAAT 1 cut(s) 279
AspLEI GCGC 1 cut(s) 296
AsuHPI GGTGA 1 cut(s) 52
BfmI CTRYAG 1 cut(s) 8
BisI GCNGC 2 cut(s) 8, 265
BlsI GCNGC 2 cut(s) 9, 266
BmsI GCATC 3 cut(s) 307, 402, 423
BplI GAGNNNNNCTC 1 cut(s) 38
BpmI CTGGAG 1 cut(s) 46
BsaJI CCNNGG 1 cut(s) 22
Bsc4I CCNNNNNNNGG 1 cut(s) 271
Bse118I RCCGGY 1 cut(s) 267
BseDI CCNNGG 1 cut(s) 22
BseLI CCNNNNNNNGG 1 cut(s) 271
BseRI GAGGAG 2 cut(s) 62, 71
BseX3I CGGCCG 1 cut(s) 262
Bsh1236I CGCG 1 cut(s) 296
Bsh1285I CGRYCG 1 cut(s) 265
BshFI GGCC 2 cut(s) 264, 425
BsiEI CGRYCG 1 cut(s) 265
BsiSI CCGG 1 cut(s) 268
BslI CCNNNNNNNGG 1 cut(s) 271
BsnI GGCC 2 cut(s) 264, 425
Bsp143I GATC 3 cut(s) 35, 65, 383
BspACI CCGC 3 cut(s) 265, 271, 287
BspANI GGCC 2 cut(s) 264, 425
BspFNI CGCG 1 cut(s) 296
BspMAI CTGCAG 1 cut(s) 12
BspPI GGATC 2 cut(s) 60, 391
BsrFI RCCGGY 1 cut(s) 267
BssAI RCCGGY 1 cut(s) 267
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 3 cut(s) 35, 65, 383
BstC8I GCNNGC 1 cut(s) 269
BstFNI CGCG 1 cut(s) 296
BstHHI GCGC 1 cut(s) 296
BstKTI GATC 3 cut(s) 38, 68, 386
BstMBI GATC 3 cut(s) 35, 65, 383
BstMCI CGRYCG 1 cut(s) 265
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstSFI CTRYAG 1 cut(s) 8
BstUI CGCG 1 cut(s) 296
BstX2I RGATCY 1 cut(s) 65
BstXI CCANNNNNNTGG 1 cut(s) 26
BstYI RGATCY 1 cut(s) 65
BstZI CGGCCG 1 cut(s) 262
BsuRI GGCC 2 cut(s) 264, 425
BtsIMutI CAGTG 1 cut(s) 356
Cac8I GCNNGC 1 cut(s) 269
CfoI GCGC 1 cut(s) 296
Cfr10I RCCGGY 1 cut(s) 267
Csp6I GTAC 1 cut(s) 149
CspCI CAANNNNNGTGG 4 cut(s) 121, 152, 156, 187
CviJI RGCY 3 cut(s) 196, 264, 425
CviKI_1 RGCY 3 cut(s) 196, 264, 425
CviQI GTAC 1 cut(s) 149
DpnI GATC 3 cut(s) 37, 67, 385
DpnII GATC 3 cut(s) 35, 65, 383
EaeI YGGCCR 1 cut(s) 262
EagI CGGCCG 1 cut(s) 262
EciI GGCGGA 1 cut(s) 302
EclXI CGGCCG 1 cut(s) 262
Eco52I CGGCCG 1 cut(s) 262
FaiI YATR 6 cut(s) 125, 188, 218, 235, 284, 372
FauI CCCGC 1 cut(s) 264
Fnu4HI GCNGC 2 cut(s) 8, 265
Fsp4HI GCNGC 2 cut(s) 8, 265
GlaI GCGC 1 cut(s) 295
GluI GCNGC 2 cut(s) 8, 265
GsuI CTGGAG 1 cut(s) 46
HaeIII GGCC 2 cut(s) 264, 425
HapII CCGG 1 cut(s) 268
HhaI GCGC 1 cut(s) 296
Hin6I GCGC 1 cut(s) 294
HinP1I GCGC 1 cut(s) 294
HinfI GANTC 3 cut(s) 15, 56, 167
HpaII CCGG 1 cut(s) 268
HphI GGTGA 1 cut(s) 52
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 1 cut(s) 33
Hpy188III TCNNGA 2 cut(s) 63, 164
Hpy8I GTNNAC 1 cut(s) 19
HpyCH4V TGCA 2 cut(s) 10, 414
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
HspAI GCGC 1 cut(s) 294
KroI GCCGGC 1 cut(s) 267
KroNI GCCGGC 1 cut(s) 269
Kzo9I GATC 3 cut(s) 35, 65, 383
LmnI GCTCC 1 cut(s) 216
LpnPI CCDG 4 cut(s) 76, 84, 281, 374
LweI GCATC 3 cut(s) 307, 402, 423
MaeIII GTNAC 1 cut(s) 40
MalI GATC 3 cut(s) 37, 67, 385
MboI GATC 3 cut(s) 35, 65, 383
MboII GAAGA 1 cut(s) 326
MflI RGATCY 1 cut(s) 65
MluCI AATT 1 cut(s) 404
MlyI GAGTC 1 cut(s) 24
MmeI TCCRAC 1 cut(s) 11
MreI CGCCGGCG 1 cut(s) 267
MroNI GCCGGC 1 cut(s) 267
MseI TTAA 3 cut(s) 120, 279, 433
MslI CAYNNNNRTG 1 cut(s) 24
MspI CCGG 1 cut(s) 268
MvnI CGCG 1 cut(s) 296
MwoI GCNNNNNNNGC 1 cut(s) 293
NaeI GCCGGC 1 cut(s) 269
NdeII GATC 3 cut(s) 35, 65, 383
NgoMIV GCCGGC 1 cut(s) 267
NmuCI GTSAC 1 cut(s) 40
OliI CACNNNNGTG 1 cut(s) 24
PdiI GCCGGC 1 cut(s) 269
PfeI GAWTC 2 cut(s) 56, 167
PkrI GCNGC 2 cut(s) 9, 266
PleI GAGTC 1 cut(s) 23
PpsI GAGTC 1 cut(s) 23
PshBI ATTAAT 1 cut(s) 279
PstI CTGCAG 1 cut(s) 12
PsuI RGATCY 1 cut(s) 65
RsaI GTAC 1 cut(s) 150
RsaNI GTAC 1 cut(s) 149
RseI CAYNNNNRTG 1 cut(s) 24
SaqAI TTAA 3 cut(s) 120, 279, 433
SatI GCNGC 2 cut(s) 8, 265
Sau3AI GATC 3 cut(s) 35, 65, 383
SchI GAGTC 1 cut(s) 24
SetI ASST 1 cut(s) 24
SfaNI GCATC 3 cut(s) 307, 402, 423
SfcI CTRYAG 1 cut(s) 8
SgrAI CRCCGGYG 1 cut(s) 267
SmiMI CAYNNNNRTG 1 cut(s) 24
Sse9I AATT 1 cut(s) 404
SsiI CCGC 3 cut(s) 265, 271, 287
TasI AATT 1 cut(s) 404
TauI GCSGC 1 cut(s) 267
TfiI GAWTC 2 cut(s) 56, 167
Tru1I TTAA 3 cut(s) 120, 279, 433
Tru9I TTAA 3 cut(s) 120, 279, 433
TscAI CASTG 1 cut(s) 356
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 1 cut(s) 7
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 1 cut(s) 387
TspGWI ACGGA 2 cut(s) 59, 166
TspRI CASTG 1 cut(s) 356
VspI ATTAAT 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.