Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0020397

Physical Location & Seq

Genomic Coordinates Reverse (-)

18077992 .. 18078589

Gene Structure 598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g15640.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTTTGAGGGAGACCTTGTGCCAGATGTGCAGTCCTATCAGATTTTGATGCAAGGCTTATGTAGGAAAGGGCAGGTGAATATCGCGGTCGATTTCTTCGAGGACATGTTGAACAAATGGTTCGTGTCGGATACGCTGAGTTACATGACATTGTTGAATAGTTTGTGTTGGAATAAGAAACTTCGTGAGGCATATAAGCTGCCTTGTAGGATGAAGGTTAAGGAGGGGCGCTCGAGGGATGCTTGTAAGGTTCTCGAGGACATGGCGTCAAATGGGTGCTTACCAAATTTGGTATCTTATCGAACCTTGTTTAGCAGGTTATGCGATCATGGGATGCTTGACGAGGCTAATAGTTACATGGAGACAATGGTATCAAAAGGGTTTTCTCCGCATTTCTCAGTTATTCATGCTTTGGTTAAAGGGTTCTTAATGTGGGTAGGTTTGAGGAAGCTTGTGGATTTTGGAGGAGGTGCTAAACCACGGGGAAGTTCCTCGTACAAATACTTGGATTACGGTAGTTCCTGGGATATGCGAAGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000301 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0006890 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0016070 GO:0016192 GO:0016787 GO:0016788 GO:0017119 GO:0022607 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048193 GO:0048213 GO:0051179 GO:0051234 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0099023 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG4 PPR PPR_1 PPR_2 PPR_3

Protein Analysis

181

Amino Acids

20.63

Weight (kDa)

8.7

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020397)

Species	Orthologous Gene IDs
malus_domestica	MD07G1160100.v1.1
pyrus_communis	pycom07g15640
rosa_chinensis	RchiOBHm_Chr2g0097111
rosa_samantha	Rh2BG113400 Rh2CG115700 Rh2DG114700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	64
Acc36I	ACCTGC	2 cut(s)	64, 306
AccII	CGCG	1 cut(s)	86
AciI	CCGC	2 cut(s)	86, 389
AcsI	RAATTY	1 cut(s)	286
AcyI	GRCGYC	1 cut(s)	266
AfaI	GTAC	1 cut(s)	497
AflIII	ACRYGT	1 cut(s)	105
AgsI	TTSAA	2 cut(s)	112, 157
AhdI	GACNNNNNGTC	1 cut(s)	265
AjnI	CCWGG	1 cut(s)	521
AluBI	AGCT	2 cut(s)	199, 451
AluI	AGCT	2 cut(s)	199, 451
Alw26I	GTCTC	2 cut(s)	6, 356
Ama87I	CYCGRG	2 cut(s)	232, 254
ApeKI	GCWGC	1 cut(s)	199
ApoI	RAATTY	1 cut(s)	286
AspLEI	GCGC	1 cut(s)	231
AsuHPI	GGTGA	1 cut(s)	88
AvaI	CYCGRG	2 cut(s)	232, 254
BaeI	ACNNNNGTAYC	2 cut(s)	354, 387
BbvI	GCAGC	1 cut(s)	186
BciT130I	CCWGG	1 cut(s)	523
BciVI	GTATCC	1 cut(s)	124
BcoDI	GTCTC	2 cut(s)	6, 356
BfoI	RGCGCY	1 cut(s)	232
BfuAI	ACCTGC	2 cut(s)	64, 306
BfuI	GTATCC	1 cut(s)	124
BisI	GCNGC	1 cut(s)	200
BlsI	GCNGC	1 cut(s)	201
Bme1390I	CCNGG	1 cut(s)	523
BmeRI	GACNNNNNGTC	1 cut(s)	265
BmeT110I	CYCGRG	2 cut(s)	232, 254
BmrFI	CCNGG	1 cut(s)	523
BmsI	GCATC	3 cut(s)	39, 229, 324
BplI	GAGNNNNNCTC	2 cut(s)	215, 247
BsaHI	GRCGYC	1 cut(s)	266
BsaI	GGTCTC	1 cut(s)	6
BsaJI	CCNNGG	2 cut(s)	479, 522
BsaXI	ACNNNNNCTCC	1 cut(s)	33
BseBI	CCWGG	1 cut(s)	523
BseDI	CCNNGG	2 cut(s)	479, 522
BseGI	GGATG	3 cut(s)	216, 244, 339
BseMII	CTCAG	2 cut(s)	128, 411
BseRI	GAGGAG	1 cut(s)	480
BseXI	GCAGC	1 cut(s)	186
BsgI	GTGCAG	1 cut(s)	50
Bsh1236I	CGCG	1 cut(s)	86
Bsh1285I	CGRYCG	1 cut(s)	90
BsiEI	CGRYCG	1 cut(s)	90
BsiHKCI	CYCGRG	2 cut(s)	232, 254
BsmAI	GTCTC	2 cut(s)	6, 356
Bso31I	GGTCTC	1 cut(s)	6
BsoBI	CYCGRG	2 cut(s)	232, 254
Bsp143I	GATC	1 cut(s)	325
BspACI	CCGC	2 cut(s)	86, 389
BspCNI	CTCAG	2 cut(s)	129, 410
BspFNI	CGCG	1 cut(s)	86
BspMI	ACCTGC	2 cut(s)	64, 306
BspTNI	GGTCTC	1 cut(s)	6
BssECI	CCNNGG	2 cut(s)	479, 522
BssMI	GATC	1 cut(s)	325
BssNI	GRCGYC	1 cut(s)	266
Bst2UI	CCWGG	1 cut(s)	523
Bst4CI	ACNGT	1 cut(s)	515
Bst6I	CTCTTC	1 cut(s)	529
BstACI	GRCGYC	1 cut(s)	266
BstAPI	GCANNNNNTGC	1 cut(s)	321
BstDEI	CTNAG	2 cut(s)	137, 397
BstDSI	CCRYGG	1 cut(s)	479
BstF5I	GGATG	3 cut(s)	216, 244, 339
BstFNI	CGCG	1 cut(s)	86
BstH2I	RGCGCY	1 cut(s)	232
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	1 cut(s)	328
BstMAI	GTCTC	2 cut(s)	6, 356
BstMBI	GATC	1 cut(s)	325
BstMCI	CGRYCG	1 cut(s)	90
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 321
BstNI	CCWGG	1 cut(s)	523
BstNSI	RCATGY	1 cut(s)	109
BstSCI	CCNGG	1 cut(s)	521
BstUI	CGCG	1 cut(s)	86
BstV1I	GCAGC	1 cut(s)	186
BsuI	GTATCC	1 cut(s)	124
BtgI	CCRYGG	1 cut(s)	479
BtsCI	GGATG	3 cut(s)	216, 244, 339
BveI	ACCTGC	2 cut(s)	64, 306
CfoI	GCGC	1 cut(s)	231
CseI	GACGC	1 cut(s)	255
Csp6I	GTAC	1 cut(s)	496
CviAII	CATG	6 cut(s)	106, 145, 262, 329, 358, 407
CviJI	RGCY	4 cut(s)	57, 199, 347, 451
CviKI_1	RGCY	4 cut(s)	57, 199, 347, 451
CviQI	GTAC	1 cut(s)	496
DdeI	CTNAG	2 cut(s)	137, 397
DpnI	GATC	1 cut(s)	327
DpnII	GATC	1 cut(s)	325
DriI	GACNNNNNGTC	1 cut(s)	265
Eam1104I	CTCTTC	1 cut(s)	529
Eam1105I	GACNNNNNGTC	1 cut(s)	265
EarI	CTCTTC	1 cut(s)	529
Eco31I	GGTCTC	1 cut(s)	6
Eco88I	CYCGRG	2 cut(s)	232, 254
EcoRII	CCWGG	1 cut(s)	521
FaeI	CATG	6 cut(s)	109, 148, 265, 332, 361, 410
FatI	CATG	6 cut(s)	105, 144, 261, 328, 357, 406
Fnu4HI	GCNGC	1 cut(s)	200
FokI	GGATG	3 cut(s)	223, 251, 346
Fsp4HI	GCNGC	1 cut(s)	200
GlaI	GCGC	1 cut(s)	230
GluI	GCNGC	1 cut(s)	200
HaeII	RGCGCY	1 cut(s)	232
HgaI	GACGC	1 cut(s)	255
HhaI	GCGC	1 cut(s)	231
Hin1I	GRCGYC	1 cut(s)	266
Hin1II	CATG	6 cut(s)	109, 148, 265, 332, 361, 410
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HindIII	AAGCTT	1 cut(s)	449
HphI	GGTGA	1 cut(s)	88
Hpy188I	TCNGA	2 cut(s)	42, 130
Hpy188III	TCNNGA	2 cut(s)	185, 254
HpyAV	CCTTC	1 cut(s)	208
HpyCH4III	ACNGT	1 cut(s)	515
HpyCH4V	TGCA	2 cut(s)	31, 52
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 321
HpyF3I	CTNAG	2 cut(s)	137, 397
Hsp92I	GRCGYC	1 cut(s)	266
Hsp92II	CATG	6 cut(s)	109, 148, 265, 332, 361, 410
HspAI	GCGC	1 cut(s)	229
Kzo9I	GATC	1 cut(s)	325
LpnPI	CCDG	5 cut(s)	36, 59, 301, 508, 535
Lsp1109I	GCAGC	1 cut(s)	186
LweI	GCATC	3 cut(s)	39, 229, 324
MaeIII	GTNAC	2 cut(s)	140, 353
MalI	GATC	1 cut(s)	327
MboI	GATC	1 cut(s)	325
MboII	GAAGA	1 cut(s)	88
MluCI	AATT	1 cut(s)	286
MmeI	TCCRAC	2 cut(s)	108, 149
MseI	TTAA	3 cut(s)	219, 417, 428
MspR9I	CCNGG	1 cut(s)	523
MvaI	CCWGG	1 cut(s)	523
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	2 cut(s)	28, 321
NdeII	GATC	1 cut(s)	325
NlaIII	CATG	6 cut(s)	109, 148, 265, 332, 361, 410
NspI	RCATGY	1 cut(s)	109
PaeR7I	CTCGAG	2 cut(s)	232, 254
PaqCI	CACCTGC	1 cut(s)	64
PciI	ACATGT	1 cut(s)	105
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PkrI	GCNGC	1 cut(s)	201
PscI	ACATGT	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	521
PspGI	CCWGG	1 cut(s)	521
PspXI	VCTCGAGB	1 cut(s)	232
RsaI	GTAC	1 cut(s)	497
RsaNI	GTAC	1 cut(s)	496
SaqAI	TTAA	3 cut(s)	219, 417, 428
SatI	GCNGC	1 cut(s)	200
Sau3AI	GATC	1 cut(s)	325
ScrFI	CCNGG	1 cut(s)	523
SfaNI	GCATC	3 cut(s)	39, 229, 324
Sfr274I	CTCGAG	2 cut(s)	232, 254
SlaI	CTCGAG	2 cut(s)	232, 254
SmlI	CTYRAG	2 cut(s)	232, 254
SmoI	CTYRAG	2 cut(s)	232, 254
Sse9I	AATT	1 cut(s)	286
SsiI	CCGC	2 cut(s)	86, 389
StyD4I	CCNGG	1 cut(s)	521
TaaI	ACNGT	1 cut(s)	515
TaqI	TCGA	5 cut(s)	90, 99, 233, 255, 301
TasI	AATT	1 cut(s)	286
Tru1I	TTAA	3 cut(s)	219, 417, 428
Tru9I	TTAA	3 cut(s)	219, 417, 428
TseI	GCWGC	1 cut(s)	199
TspDTI	ATGAA	2 cut(s)	227, 395
XapI	RAATTY	1 cut(s)	286
XceI	RCATGY	1 cut(s)	109
XhoI	CTCGAG	2 cut(s)	232, 254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.