pycom07g24890

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0021175
Physical Location & Seq
Forward (+)
25410218 .. 25410646
429 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 429 bp
ATGGGATGGGTGATGAACGAAGTCTTGCGGCTATACCCTTCAGCACCAAATGCACAAAGGCAAGCCAAAGCCGACATTCAAGTGAACCACGACCTGTCGATTCCGAGTGGAACAAACATGTGGATTGACATCGTCGGCATGCACCATGACCCGGCCCTGTGGGGCGACGACGTCAACGAGTTCAAGCCGGAGAGGTTCAAGGACAGCATCCACGGGGGGTGCAAGCACAAGATGGGGTACTTGCCTTTTGGGTTTGGAGGGAGAATGTGCATCGGTAGAAACTTGACTTTCTTGGAGTACAAGATAGTTCTAACCCTAATTCTATCTAGGTTTTCGTTTACCATCTCTCCAACATACTGCCATTCCCCTTCTATTGTCCTATCTCTGAGACCTTCCGACGGCCTGCCTCTAGTACTCCAACCCCTCTAG

Protein Analysis

143

Amino Acids

15.98

Weight (kDa)

7.79

Isoelectric Point (pI)

49.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 3 - 118 1.3e-33 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021175)

Species Orthologous Gene IDs
malus_domestica MD01G1202800.v1.1
pyrus_communis pycom01g21210 pycom07g24890
rosa_multiflora Rmu_co7978254.1_g000001
rosa_samantha Rh1CG394500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 174
AciI CCGC 1 cut(s) 28
AcuI CTGAAG 1 cut(s) 24
AcyI GRCGYC 1 cut(s) 171
AfaI GTAC 3 cut(s) 239, 299, 414
AfiI CCNNNNNNNGG 2 cut(s) 151, 398
AflIII ACRYGT 1 cut(s) 117
AgsI TTSAA 3 cut(s) 80, 184, 199
Alw26I GTCTC 1 cut(s) 382
AoxI GGCC 2 cut(s) 153, 400
AspS9I GGNCC 1 cut(s) 154
AsuC2I CCSGG 1 cut(s) 152
AsuHPI GGTGA 1 cut(s) 22
BccI CCATC 2 cut(s) 226, 350
BceAI ACGGC 1 cut(s) 415
BcnI CCSGG 1 cut(s) 152
BcoDI GTCTC 1 cut(s) 382
BfaI CTAG 3 cut(s) 327, 410, 427
BisI GCNGC 1 cut(s) 29
BlsI GCNGC 1 cut(s) 30
BmcAI AGTACT 1 cut(s) 414
Bme1390I CCNGG 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 154
BmrFI CCNGG 1 cut(s) 152
BmsI GCATC 2 cut(s) 216, 279
BpuMI CCSGG 1 cut(s) 152
BsaBI GATNNNNATC 1 cut(s) 128
BsaHI GRCGYC 1 cut(s) 171
BsaI GGTCTC 1 cut(s) 382
BsaJI CCNNGG 1 cut(s) 211
BsaXI ACNNNNNCTCC 2 cut(s) 331, 361
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 398
Bse8I GATNNNNATC 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 211
BseGI GGATG 2 cut(s) 11, 207
BseJI GATNNNNATC 1 cut(s) 128
BseLI CCNNNNNNNGG 2 cut(s) 151, 398
BseMII CTCAG 1 cut(s) 377
BshFI GGCC 2 cut(s) 155, 402
BsiSI CCGG 2 cut(s) 152, 188
BslI CCNNNNNNNGG 2 cut(s) 151, 398
BsmAI GTCTC 1 cut(s) 382
BsnI GGCC 2 cut(s) 155, 402
Bso31I GGTCTC 1 cut(s) 382
BspACI CCGC 1 cut(s) 28
BspANI GGCC 2 cut(s) 155, 402
BspCNI CTCAG 1 cut(s) 378
BspTNI GGTCTC 1 cut(s) 382
BssECI CCNNGG 1 cut(s) 211
BssNI GRCGYC 1 cut(s) 171
BstACI GRCGYC 1 cut(s) 171
BstAPI GCANNNNNTGC 1 cut(s) 50
BstC8I GCNNGC 4 cut(s) 63, 140, 224, 404
BstDEI CTNAG 1 cut(s) 386
BstDSI CCRYGG 1 cut(s) 211
BstF5I GGATG 2 cut(s) 11, 207
BstMAI GTCTC 1 cut(s) 382
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNSI RCATGY 2 cut(s) 121, 142
BstSCI CCNGG 1 cut(s) 150
BsuRI GGCC 2 cut(s) 155, 402
BtgI CCRYGG 1 cut(s) 211
BtsCI GGATG 2 cut(s) 11, 207
Cac8I GCNNGC 4 cut(s) 63, 140, 224, 404
Cfr13I GGNCC 1 cut(s) 154
Csp6I GTAC 3 cut(s) 238, 298, 413
CviAII CATG 3 cut(s) 118, 139, 146
CviJI RGCY 6 cut(s) 31, 65, 71, 155, 187, 402
CviKI_1 RGCY 6 cut(s) 31, 65, 71, 155, 187, 402
CviQI GTAC 3 cut(s) 238, 298, 413
DdeI CTNAG 1 cut(s) 386
Eco31I GGTCTC 1 cut(s) 382
Eco57I CTGAAG 1 cut(s) 24
FaeI CATG 3 cut(s) 121, 142, 149
FaiI YATR 5 cut(s) 34, 119, 140, 147, 355
FatI CATG 3 cut(s) 117, 138, 145
Fnu4HI GCNGC 1 cut(s) 29
FokI GGATG 2 cut(s) 18, 194
Fsp4HI GCNGC 1 cut(s) 29
FspBI CTAG 3 cut(s) 327, 410, 427
GluI GCNGC 1 cut(s) 29
HaeIII GGCC 2 cut(s) 155, 402
HapII CCGG 2 cut(s) 152, 188
Hin1I GRCGYC 1 cut(s) 171
Hin1II CATG 3 cut(s) 121, 142, 149
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HinfI GANTC 1 cut(s) 100
HpaII CCGG 2 cut(s) 152, 188
HphI GGTGA 1 cut(s) 22
Hpy166II GTNNAC 3 cut(s) 85, 175, 339
Hpy188I TCNGA 3 cut(s) 105, 387, 397
Hpy8I GTNNAC 3 cut(s) 85, 175, 339
Hpy99I CGWCG 4 cut(s) 137, 170, 173, 401
HpyAV CCTTC 3 cut(s) 48, 378, 402
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 4 cut(s) 53, 142, 222, 270
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 1 cut(s) 386
HpySE526I ACGT 1 cut(s) 171
Hsp92I GRCGYC 1 cut(s) 171
Hsp92II CATG 3 cut(s) 121, 142, 149
LpnPI CCDG 5 cut(s) 107, 165, 170, 201, 416
LweI GCATC 2 cut(s) 216, 279
MaeI CTAG 3 cut(s) 327, 410, 427
MaeII ACGT 1 cut(s) 171
MluCI AATT 1 cut(s) 318
MmeI TCCRAC 2 cut(s) 374, 420
MnlI CCTC 3 cut(s) 186, 251, 417
MslI CAYNNNNRTG 1 cut(s) 80
MspI CCGG 2 cut(s) 152, 188
MspR9I CCNGG 1 cut(s) 152
MwoI GCNNNNNNNGC 1 cut(s) 50
NciI CCSGG 1 cut(s) 152
NlaIII CATG 3 cut(s) 121, 142, 149
NspI RCATGY 2 cut(s) 121, 142
PaeI GCATGC 1 cut(s) 142
PciI ACATGT 1 cut(s) 117
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PfeI GAWTC 1 cut(s) 100
PflFI GACNNNGTC 2 cut(s) 131, 170
PkrI GCNGC 1 cut(s) 30
PscI ACATGT 1 cut(s) 117
PspPI GGNCC 1 cut(s) 154
PsyI GACNNNGTC 2 cut(s) 131, 170
RsaI GTAC 3 cut(s) 239, 299, 414
RsaNI GTAC 3 cut(s) 238, 298, 413
RseI CAYNNNNRTG 1 cut(s) 80
SatI GCNGC 1 cut(s) 29
Sau96I GGNCC 1 cut(s) 154
ScaI AGTACT 1 cut(s) 414
ScrFI CCNGG 1 cut(s) 152
SetI ASST 5 cut(s) 96, 174, 197, 332, 394
SfaNI GCATC 2 cut(s) 216, 279
SmiMI CAYNNNNRTG 1 cut(s) 80
SphI GCATGC 1 cut(s) 142
Sse9I AATT 1 cut(s) 318
SsiI CCGC 1 cut(s) 28
SspMI CTAG 3 cut(s) 327, 410, 427
StyD4I CCNGG 1 cut(s) 150
TaiI ACGT 1 cut(s) 174
TaqI TCGA 1 cut(s) 98
TasI AATT 1 cut(s) 318
TatI WGTACW 2 cut(s) 297, 412
TauI GCSGC 1 cut(s) 31
TfiI GAWTC 1 cut(s) 100
TspDTI ATGAA 1 cut(s) 29
Tth111I GACNNNGTC 2 cut(s) 131, 170
XceI RCATGY 2 cut(s) 121, 142
XspI CTAG 3 cut(s) 327, 410, 427
ZraI GACGTC 1 cut(s) 172
ZrmI AGTACT 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.