Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0021175

Physical Location & Seq

Genomic Coordinates Forward (+)

66192169 .. 66192359

Gene Structure 191 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG394500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 191 bp

ATGCACCATGATCCAGTTCTATGGGGTGAGGACGTGCATGAGTTTAAGTCAGAGAGGTTCAAAGATGACATACATGGTGGGTGCAAGCACAAGATGGGTTTCTTGCCTTTTGGGTTTGGAGGAAGGATGTGTATTGGTAGAAACTTGAGCTTCTTGGAGTATAAGATTGTGCTAACCCTGATTCTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0010268 GO:0010817 GO:0014070 GO:0016128 GO:0016131 GO:0016491 GO:0033993 GO:0042221 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

63

Amino Acids

7.29

Weight (kDa)

6.95

Isoelectric Point (pI)

45.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	1 - 63	3.4e-15	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021175)

Species	Orthologous Gene IDs
malus_domestica	MD01G1202800.v1.1
pyrus_communis	pycom01g21210 pycom07g24890
rosa_multiflora	Rmu_co7978254.1_g000001
rosa_samantha	Rh1CG394500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	5
AgsI	TTSAA	1 cut(s)	61
AjiI	CACGTC	1 cut(s)	34
AluBI	AGCT	1 cut(s)	150
AluI	AGCT	1 cut(s)	150
AlwI	GGATC	1 cut(s)	5
AsuHPI	GGTGA	1 cut(s)	38
BccI	CCATC	1 cut(s)	88
BfaI	CTAG	1 cut(s)	189
BmgBI	CACGTC	1 cut(s)	34
BpuEI	CTTGAG	1 cut(s)	166
Bse1I	ACTGG	1 cut(s)	14
BseGI	GGATG	1 cut(s)	132
BseNI	ACTGG	1 cut(s)	14
Bsp143I	GATC	1 cut(s)	10
BspPI	GGATC	1 cut(s)	5
BsrI	ACTGG	1 cut(s)	14
BssMI	GATC	1 cut(s)	10
BstC8I	GCNNGC	1 cut(s)	86
BstF5I	GGATG	1 cut(s)	132
BstKTI	GATC	1 cut(s)	13
BstMBI	GATC	1 cut(s)	10
BstXI	CCANNNNNNTGG	1 cut(s)	21
BtrI	CACGTC	1 cut(s)	34
BtsCI	GGATG	1 cut(s)	132
Cac8I	GCNNGC	1 cut(s)	86
CviAII	CATG	3 cut(s)	8, 38, 74
CviJI	RGCY	1 cut(s)	150
CviKI_1	RGCY	1 cut(s)	150
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
FaeI	CATG	3 cut(s)	11, 41, 77
FaiI	YATR	6 cut(s)	9, 22, 39, 71, 75, 162
FatI	CATG	3 cut(s)	7, 37, 73
FokI	GGATG	1 cut(s)	139
FspBI	CTAG	1 cut(s)	189
Hin1II	CATG	3 cut(s)	11, 41, 77
HinfI	GANTC	1 cut(s)	181
HphI	GGTGA	1 cut(s)	38
Hpy188I	TCNGA	1 cut(s)	52
HpyAV	CCTTC	1 cut(s)	117
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	3 cut(s)	4, 37, 84
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	3 cut(s)	11, 41, 77
Kzo9I	GATC	1 cut(s)	10
LpnPI	CCDG	1 cut(s)	27
MaeI	CTAG	1 cut(s)	189
MaeII	ACGT	1 cut(s)	33
MalI	GATC	1 cut(s)	12
MboI	GATC	1 cut(s)	10
MnlI	CCTC	3 cut(s)	22, 48, 113
MseI	TTAA	1 cut(s)	45
NdeII	GATC	1 cut(s)	10
NlaIII	CATG	3 cut(s)	11, 41, 77
PfeI	GAWTC	1 cut(s)	181
SaqAI	TTAA	1 cut(s)	45
Sau3AI	GATC	1 cut(s)	10
SetI	ASST	3 cut(s)	36, 59, 152
SmlI	CTYRAG	1 cut(s)	145
SmoI	CTYRAG	1 cut(s)	145
SspMI	CTAG	1 cut(s)	189
TaiI	ACGT	1 cut(s)	36
TfiI	GAWTC	1 cut(s)	181
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
XspI	CTAG	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.