Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0008053

Physical Location & Seq

Genomic Coordinates Forward (+)

4590354 .. 4592658

Gene Structure 2305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g05990.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGTCACATCTTGAAGCAAGATATCCAGCTATATTGTTCAAACAACAGCTAACTGCTTGCGTAGAAAAGATCTTTGGCTTGATGCGTGACAGTTTGAAGAAGGAATTAGCTCCACTCTTGGGCTCATGCATTCAGGCACCCAAAGCTGCGCGAAAGTCATCTAGATCACCTGGTAATGCTCCTCAGCAATTACCTGGAAGTCAGTGGGACAACATAATCAAATTCTTGGATACCCTAATGAGTCGATTACGTGGGAATCATGTACCTTCATTTTTTATTCGCAAGCTAATCACACAGGTCTTCTCTTTCATCAATATGTCACTTTTCAACAGTCTACTGCTGCGACGCGAATGTTGCACATTTTCAAACGGTGAATATGTGAAATCAGGTCTTGCTGAACTGGAGAAATGGATTGGCAACACTGGGGAGGAGTATGCCGGAACCTCTTGGCACGAGCTAAATTATATCAGACAAGCTGTTGGTTTTCTGGTAATACATCAGAAGAGGAAAAAGTCTCTGGATGAAATTAGGCAGGATCTTTGTCCGGTGGTTGCTCAAATGAGGGAGATTTTGAACAAGGACAACCAGAATCTGACCTCCAATTCGTTCTTGTTGGATGATGATCTGAGCATTCCATTCTCTACCGAAGATATTGACATGGCAATTCCTCTAACCGATCCTTCAGAAATCGAACTTCCATCATCCTTGTCTGGTTATACTTGCGCGCAGTTTCTTGTCCAGCCCCAAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000146 GO:0000166 GO:0000331 GO:0003674 GO:0003774 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005773 GO:0005856 GO:0006810 GO:0006928 GO:0007097 GO:0008092 GO:0008144 GO:0008150 GO:0008360 GO:0009987 GO:0012505 GO:0015629 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022603 GO:0022604 GO:0030029 GO:0030048 GO:0030554 GO:0030898 GO:0031090 GO:0031410 GO:0031965 GO:0031967 GO:0031975 GO:0031982 GO:0032553 GO:0032555 GO:0032559 GO:0032878 GO:0033275 GO:0035639 GO:0036094 GO:0042623 GO:0042641 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043531 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0046907 GO:0050789 GO:0050793 GO:0050794 GO:0051015 GO:0051128 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:0065007 GO:0065008 GO:0070252 GO:0097159 GO:0097367 GO:0097708 GO:0140027 GO:1901265 GO:1901363 GO:2000769

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DIL IQ Myosin_N Myosin_head

Protein Analysis

251

Amino Acids

28.28

Weight (kDa)

6.9

Isoelectric Point (pI)

57.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33200 AT4G33200 AT4G33200 AT4G33200
fragaria_vesca	FvH4_2g30900
malus_domestica	MD08G1072000.v1.1 MD15G1049200.v1.1
prunus_persica	Prupe.1G403500_v2.0.a1 Prupe.1G403500_v2.0.a1 Prupe.1G403500_v2.0.a1 Prupe.1G403500_v2.0.a1
pyrus_communis	pycom08g05980 pycom08g05990 pycom15g04800
rosa_chinensis	RchiOBHm_Chr6g0311941
rosa_laevigata	RLG00000010367
rosa_multiflora	Rmu_sc0005381.1_g000002
rosa_roxburghii	Rroxscaffold_7G00157200
rosa_rugosa	Rorug06G0391500
rosa_samantha	Rh6AG508000 Rh6BG519200 Rh6CG524900 Rh6DG510500
rosa_wichuraiana	Rw6G044220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	136
AccI	GTMKAC	1 cut(s)	334
AccII	CGCG	3 cut(s)	151, 348, 725
AclWI	GGATC	2 cut(s)	543, 671
AcsI	RAATTY	1 cut(s)	221
AcuI	CTGAAG	1 cut(s)	666
AfaI	GTAC	1 cut(s)	264
AfiI	CCNNNNNNNGG	1 cut(s)	119
AgsI	TTSAA	6 cut(s)	14, 40, 97, 328, 366, 574
AjnI	CCWGG	2 cut(s)	169, 193
AjuI	GAANNNNNNNTTGG	2 cut(s)	57, 89
AluBI	AGCT	7 cut(s)	29, 49, 110, 146, 286, 457, 476
AluI	AGCT	7 cut(s)	29, 49, 110, 146, 286, 457, 476
Alw26I	GTCTC	1 cut(s)	519
AlwI	GGATC	2 cut(s)	543, 671
AlwNI	CAGNNNCTG	1 cut(s)	592
ApeKI	GCWGC	2 cut(s)	146, 340
ApoI	RAATTY	1 cut(s)	221
ArsI	GACNNNNNNTTYG	2 cut(s)	586, 618
AspLEI	GCGC	3 cut(s)	151, 725, 727
AsuHPI	GGTGA	2 cut(s)	159, 383
BanI	GGYRCC	1 cut(s)	136
BanII	GRGCYC	1 cut(s)	125
BauI	CACGAG	1 cut(s)	452
BbsI	GAAGAC	1 cut(s)	292
BbvCI	CCTCAGC	1 cut(s)	183
BbvI	GCAGC	2 cut(s)	133, 327
BccI	CCATC	1 cut(s)	706
BciT130I	CCWGG	2 cut(s)	171, 195
BciVI	GTATCC	1 cut(s)	223
BcoDI	GTCTC	1 cut(s)	519
BfaI	CTAG	1 cut(s)	162
BfuI	GTATCC	1 cut(s)	223
BglII	AGATCT	1 cut(s)	69
BisI	GCNGC	2 cut(s)	147, 341
BlsI	GCNGC	2 cut(s)	148, 342
Bme1390I	CCNGG	2 cut(s)	171, 195
BmiI	GGNNCC	2 cut(s)	138, 442
BmrFI	CCNGG	2 cut(s)	171, 195
BmrI	ACTGGG	1 cut(s)	432
BmsI	GCATC	1 cut(s)	72
BmuI	ACTGGG	1 cut(s)	432
BpiI	GAAGAC	1 cut(s)	292
BpmI	CTGGAG	1 cut(s)	422
Bpu10I	CCTNAGC	1 cut(s)	183
BsaAI	YACGTR	1 cut(s)	251
BsaBI	GATNNNNATC	1 cut(s)	621
BsaWI	WCCGGW	1 cut(s)	544
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
Bse1I	ACTGG	2 cut(s)	405, 427
Bse8I	GATNNNNATC	1 cut(s)	621
BseBI	CCWGG	2 cut(s)	171, 195
BseGI	GGATG	3 cut(s)	526, 622, 701
BseJI	GATNNNNATC	1 cut(s)	621
BseLI	CCNNNNNNNGG	1 cut(s)	119
BseMII	CTCAG	2 cut(s)	197, 617
BseNI	ACTGG	2 cut(s)	405, 427
BsePI	GCGCGC	1 cut(s)	723
BseRI	GAGGAG	2 cut(s)	171, 443
BseXI	GCAGC	2 cut(s)	133, 327
Bsh1236I	CGCG	3 cut(s)	151, 348, 725
BshNI	GGYRCC	1 cut(s)	136
BsiSI	CCGG	2 cut(s)	438, 545
BslFI	GGGAC	1 cut(s)	221
BslI	CCNNNNNNNGG	1 cut(s)	119
BsmAI	GTCTC	1 cut(s)	519
BsmFI	GGGAC	1 cut(s)	221
BsmI	GAATGC	2 cut(s)	129, 630
Bsp1286I	GDGCHC	1 cut(s)	125
Bsp143I	GATC	5 cut(s)	69, 164, 535, 622, 676
BspCNI	CTCAG	2 cut(s)	196, 618
BspFNI	CGCG	3 cut(s)	151, 348, 725
BspLI	GGNNCC	2 cut(s)	138, 442
BspPI	GGATC	2 cut(s)	543, 671
BspT107I	GGYRCC	1 cut(s)	136
BsrI	ACTGG	2 cut(s)	405, 427
BssHII	GCGCGC	1 cut(s)	723
BssMI	GATC	5 cut(s)	69, 164, 535, 622, 676
BssSI	CACGAG	1 cut(s)	452
Bst2BI	CACGAG	1 cut(s)	452
Bst2UI	CCWGG	2 cut(s)	171, 195
Bst4CI	ACNGT	3 cut(s)	92, 332, 371
Bst6I	CTCTTC	1 cut(s)	497
BstBAI	YACGTR	1 cut(s)	251
BstC8I	GCNNGC	3 cut(s)	58, 284, 725
BstDEI	CTNAG	2 cut(s)	183, 626
BstF5I	GGATG	3 cut(s)	526, 622, 701
BstFNI	CGCG	3 cut(s)	151, 348, 725
BstHHI	GCGC	3 cut(s)	151, 725, 727
BstKTI	GATC	5 cut(s)	72, 167, 538, 625, 679
BstMAI	GTCTC	1 cut(s)	519
BstMBI	GATC	5 cut(s)	69, 164, 535, 622, 676
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 354
BstNI	CCWGG	2 cut(s)	171, 195
BstSCI	CCNGG	2 cut(s)	169, 193
BstUI	CGCG	3 cut(s)	151, 348, 725
BstV1I	GCAGC	2 cut(s)	133, 327
BstV2I	GAAGAC	1 cut(s)	292
BstX2I	RGATCY	2 cut(s)	69, 535
BstYI	RGATCY	2 cut(s)	69, 535
BsuI	GTATCC	1 cut(s)	223
BtsCI	GGATG	3 cut(s)	526, 622, 701
BtsIMutI	CAGTG	2 cut(s)	209, 420
Cac8I	GCNNGC	3 cut(s)	58, 284, 725
CaiI	CAGNNNCTG	1 cut(s)	592
CfoI	GCGC	3 cut(s)	151, 725, 727
CseI	GACGC	1 cut(s)	354
CsiI	ACCWGGT	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	263
CviAII	CATG	3 cut(s)	126, 260, 658
CviQI	GTAC	1 cut(s)	263
DdeI	CTNAG	2 cut(s)	183, 626
DpnI	GATC	5 cut(s)	71, 166, 537, 624, 678
DpnII	GATC	5 cut(s)	69, 164, 535, 622, 676
Eam1104I	CTCTTC	1 cut(s)	497
EarI	CTCTTC	1 cut(s)	497
Eco24I	GRGCYC	1 cut(s)	125
Eco32I	GATATC	1 cut(s)	23
Eco57I	CTGAAG	1 cut(s)	666
EcoRII	CCWGG	2 cut(s)	169, 193
EcoRV	GATATC	1 cut(s)	23
EcoT22I	ATGCAT	1 cut(s)	131
EcoT38I	GRGCYC	1 cut(s)	125
FaeI	CATG	3 cut(s)	129, 263, 661
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	3 cut(s)	125, 259, 657
FblI	GTMKAC	1 cut(s)	334
Fnu4HI	GCNGC	2 cut(s)	147, 341
FokI	GGATG	3 cut(s)	533, 629, 688
FriOI	GRGCYC	1 cut(s)	125
Fsp4HI	GCNGC	2 cut(s)	147, 341
FspBI	CTAG	1 cut(s)	162
GlaI	GCGC	3 cut(s)	150, 724, 726
GluI	GCNGC	2 cut(s)	147, 341
GsuI	CTGGAG	1 cut(s)	422
HapII	CCGG	2 cut(s)	438, 545
HgaI	GACGC	1 cut(s)	354
HhaI	GCGC	3 cut(s)	151, 725, 727
Hin1II	CATG	3 cut(s)	129, 263, 661
Hin6I	GCGC	3 cut(s)	149, 723, 725
HinP1I	GCGC	3 cut(s)	149, 723, 725
HinfI	GANTC	3 cut(s)	241, 256, 589
HpaII	CCGG	2 cut(s)	438, 545
HphI	GGTGA	2 cut(s)	159, 383
Hpy166II	GTNNAC	1 cut(s)	335
Hpy188I	TCNGA	5 cut(s)	470, 501, 594, 627, 685
Hpy188III	TCNNGA	3 cut(s)	11, 162, 518
Hpy8I	GTNNAC	1 cut(s)	335
Hpy99I	CGWCG	1 cut(s)	348
HpyAV	CCTTC	3 cut(s)	94, 276, 690
HpyCH4III	ACNGT	3 cut(s)	92, 332, 371
HpyCH4IV	ACGT	1 cut(s)	250
HpyCH4V	TGCA	2 cut(s)	129, 357
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 354
HpyF3I	CTNAG	2 cut(s)	183, 626
HpySE526I	ACGT	1 cut(s)	250
Hsp92II	CATG	3 cut(s)	129, 263, 661
HspAI	GCGC	3 cut(s)	149, 723, 725
Kzo9I	GATC	5 cut(s)	69, 164, 535, 622, 676
LmnI	GCTCC	2 cut(s)	115, 184
Lsp1109I	GCAGC	2 cut(s)	133, 327
LweI	GCATC	1 cut(s)	72
MabI	ACCWGGT	1 cut(s)	169
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	1 cut(s)	250
MaeIII	GTNAC	3 cut(s)	3, 86, 318
MalI	GATC	5 cut(s)	71, 166, 537, 624, 678
MboI	GATC	5 cut(s)	69, 164, 535, 622, 676
MboII	GAAGA	4 cut(s)	109, 292, 514, 659
MflI	RGATCY	2 cut(s)	69, 535
MhlI	GDGCHC	1 cut(s)	125
MluCI	AATT	7 cut(s)	104, 188, 221, 460, 525, 601, 663
MlyI	GAGTC	1 cut(s)	250
MmeI	TCCRAC	1 cut(s)	594
MnlI	CCTC	7 cut(s)	192, 421, 454, 498, 555, 607, 678
Mph1103I	ATGCAT	1 cut(s)	131
MseI	TTAA	1 cut(s)	751
MslI	CAYNNNNRTG	1 cut(s)	314
MspI	CCGG	2 cut(s)	438, 545
MspR9I	CCNGG	2 cut(s)	171, 195
Mva1269I	GAATGC	2 cut(s)	129, 630
MvaI	CCWGG	2 cut(s)	171, 195
MvnI	CGCG	3 cut(s)	151, 348, 725
MwoI	GCNNNNNNNGC	2 cut(s)	143, 354
NdeII	GATC	5 cut(s)	69, 164, 535, 622, 676
NlaIII	CATG	3 cut(s)	129, 263, 661
NlaIV	GGNNCC	2 cut(s)	138, 442
NmuCI	GTSAC	3 cut(s)	3, 86, 318
NsiI	ATGCAT	1 cut(s)	131
PauI	GCGCGC	1 cut(s)	723
PctI	GAATGC	2 cut(s)	129, 630
PfeI	GAWTC	2 cut(s)	256, 589
PkrI	GCNGC	2 cut(s)	148, 342
PleI	GAGTC	1 cut(s)	249
PpsI	GAGTC	1 cut(s)	249
Ppu21I	YACGTR	1 cut(s)	251
Psp6I	CCWGG	2 cut(s)	169, 193
PspGI	CCWGG	2 cut(s)	169, 193
PspN4I	GGNNCC	2 cut(s)	138, 442
PstNI	CAGNNNCTG	1 cut(s)	592
PsuI	RGATCY	2 cut(s)	69, 535
PteI	GCGCGC	1 cut(s)	723
RsaI	GTAC	1 cut(s)	264
RsaNI	GTAC	1 cut(s)	263
RseI	CAYNNNNRTG	1 cut(s)	314
SaqAI	TTAA	1 cut(s)	751
SatI	GCNGC	2 cut(s)	147, 341
Sau3AI	GATC	5 cut(s)	69, 164, 535, 622, 676
SchI	GAGTC	1 cut(s)	250
ScrFI	CCNGG	2 cut(s)	171, 195
SduI	GDGCHC	1 cut(s)	125
SexAI	ACCWGGT	1 cut(s)	169
SfaNI	GCATC	1 cut(s)	72
SmiMI	CAYNNNNRTG	1 cut(s)	314
Sse9I	AATT	7 cut(s)	104, 188, 221, 460, 525, 601, 663
SspMI	CTAG	1 cut(s)	162
StyD4I	CCNGG	2 cut(s)	169, 193
TaaI	ACNGT	3 cut(s)	92, 332, 371
TaiI	ACGT	1 cut(s)	253
TaqI	TCGA	2 cut(s)	244, 690
TasI	AATT	7 cut(s)	104, 188, 221, 460, 525, 601, 663
TfiI	GAWTC	2 cut(s)	256, 589
Tru1I	TTAA	1 cut(s)	751
Tru9I	TTAA	1 cut(s)	751
TscAI	CASTG	2 cut(s)	209, 427
TseFI	GTSAC	3 cut(s)	3, 86, 318
TseI	GCWGC	2 cut(s)	146, 340
Tsp45I	GTSAC	3 cut(s)	3, 86, 318
TspDTI	ATGAA	3 cut(s)	258, 298, 537
TspRI	CASTG	2 cut(s)	209, 427
XapI	RAATTY	1 cut(s)	221
XbaI	TCTAGA	1 cut(s)	161
XmiI	GTMKAC	1 cut(s)	334
XspI	CTAG	1 cut(s)	162
Zsp2I	ATGCAT	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.