Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008053

Physical Location & Seq

Genomic Coordinates Forward (+)

53588949 .. 53590949

Gene Structure 2001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0391500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCAACTGCTTCTTCGTCGTCGTCGTCGTCGTCCAAAGGATGGATGGGCAATATCCAAACGAAGGCTGCTCGCATCTTTTTCATTCTAATCATTTTTCAGATCCCACTTTTCAGAGTTCCATGCAGAGCTGGTATGTGTACCACACCATTGCATTTCACATCTTCCCAGCTGATTACAAGTGAGATCTTTCCTGTTCCTGTAGTAAAGGCTCTTCTCTACCCTGGAGCTCTTGCAAATGGCCTCGTAAGGAACATGACTGTTCCAAGCTGGAATAACTTGTTAGAAATCTATAACTTGACCAATGCAAAGGAAGCCAATCCAGTTACTGATCTCCAGCGCTTAGAGGTTCTAACAGGGAGCTACTTCTCTGTGGCTGGAGCCCTTGTGGGTGTTCTGAAATCAGGGAGGATGAGCATGTTTGGGACACTTCTATTAATTTGGGGCCTCATCAAAGAAGGGATCTTAGGAAAGCCTGTGAACACAGATCCTACTAAAGCTGTCTATGTCTACCCAACTATGTTGCTTGCCTTGATCGCTGCCTTCTCATCTATAAAGTATAATGCGAAGAAGATTGTTAGACCTGCACCTGCTAGGCCTATTGCAAAGCCTCTTCAGAGGTCTTCAAAATCTAAGCTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000146 GO:0000166 GO:0000331 GO:0003674 GO:0003774 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005773 GO:0005856 GO:0006810 GO:0006928 GO:0007097 GO:0008092 GO:0008144 GO:0008150 GO:0008360 GO:0009987 GO:0012505 GO:0015629 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022603 GO:0022604 GO:0030029 GO:0030048 GO:0030554 GO:0030898 GO:0031090 GO:0031410 GO:0031965 GO:0031967 GO:0031975 GO:0031982 GO:0032553 GO:0032555 GO:0032559 GO:0032878 GO:0033275 GO:0035639 GO:0036094 GO:0042623 GO:0042641 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043531 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0046907 GO:0050789 GO:0050793 GO:0050794 GO:0051015 GO:0051128 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:0065007 GO:0065008 GO:0070252 GO:0097159 GO:0097367 GO:0097708 GO:0140027 GO:1901265 GO:1901363 GO:2000769

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DIL IQ Myosin_N Myosin_head

Protein Analysis

214

Amino Acids

23.23

Weight (kDa)

10.29

Isoelectric Point (pI)

40.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33200 AT4G33200 AT4G33200 AT4G33200
fragaria_vesca	FvH4_2g30900
malus_domestica	MD08G1072000.v1.1 MD15G1049200.v1.1
prunus_persica	Prupe.1G403500_v2.0.a1 Prupe.1G403500_v2.0.a1 Prupe.1G403500_v2.0.a1 Prupe.1G403500_v2.0.a1
pyrus_communis	pycom08g05980 pycom08g05990 pycom15g04800
rosa_chinensis	RchiOBHm_Chr6g0311941
rosa_laevigata	RLG00000010367
rosa_multiflora	Rmu_sc0005381.1_g000002
rosa_roxburghii	Rroxscaffold_7G00157200
rosa_rugosa	Rorug06G0391500
rosa_samantha	Rh6AG508000 Rh6BG519200 Rh6CG524900 Rh6DG510500
rosa_wichuraiana	Rw6G044220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	598
Acc36I	ACCTGC	2 cut(s)	592, 598
AccB7I	CCANNNNNTGG	1 cut(s)	42
AccI	GTMKAC	1 cut(s)	510
AclWI	GGATC	3 cut(s)	97, 470, 482
AcuI	CTGAAG	1 cut(s)	599
AfaI	GTAC	1 cut(s)	142
AfeI	AGCGCT	1 cut(s)	341
AfiI	CCNNNNNNNGG	2 cut(s)	42, 64
AgsI	TTSAA	1 cut(s)	627
AjnI	CCWGG	1 cut(s)	223
AluBI	AGCT	7 cut(s)	131, 172, 230, 270, 363, 500, 637
AluI	AGCT	7 cut(s)	131, 172, 230, 270, 363, 500, 637
Alw21I	GWGCWC	1 cut(s)	232
AlwI	GGATC	3 cut(s)	97, 470, 482
AlwNI	CAGNNNCTG	1 cut(s)	329
Aor51HI	AGCGCT	1 cut(s)	341
AoxI	GGCC	3 cut(s)	241, 445, 596
ApeKI	GCWGC	2 cut(s)	68, 539
AseI	ATTAAT	1 cut(s)	437
AspLEI	GCGC	1 cut(s)	342
AspS9I	GGNCC	1 cut(s)	445
BanII	GRGCYC	2 cut(s)	232, 385
BarI	GAAGNNNNNNTAC	2 cut(s)	198, 230
BbsI	GAAGAC	1 cut(s)	615
Bbv12I	GWGCWC	1 cut(s)	232
BbvI	GCAGC	2 cut(s)	55, 526
BccI	CCATC	2 cut(s)	36, 40
BciT130I	CCWGG	1 cut(s)	225
BfaI	CTAG	1 cut(s)	594
BfmI	CTRYAG	1 cut(s)	201
BfoI	RGCGCY	1 cut(s)	343
BfuAI	ACCTGC	2 cut(s)	592, 598
BglII	AGATCT	1 cut(s)	186
BisI	GCNGC	2 cut(s)	69, 540
BlsI	GCNGC	2 cut(s)	70, 541
Bme1390I	CCNGG	1 cut(s)	225
BmgT120I	GGNCC	1 cut(s)	445
BmiI	GGNNCC	2 cut(s)	382, 446
BmrFI	CCNGG	1 cut(s)	225
BmsI	GCATC	1 cut(s)	84
BpiI	GAAGAC	1 cut(s)	615
BpmI	CTGGAG	3 cut(s)	246, 320, 399
BsaJI	CCNNGG	1 cut(s)	223
BsaXI	ACNNNNNCTCC	2 cut(s)	372, 402
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 64
Bse1I	ACTGG	1 cut(s)	323
Bse3DI	GCAATG	1 cut(s)	149
BseBI	CCWGG	1 cut(s)	225
BseDI	CCNNGG	1 cut(s)	223
BseGI	GGATG	3 cut(s)	47, 51, 417
BseLI	CCNNNNNNNGG	2 cut(s)	42, 64
BseMI	GCAATG	1 cut(s)	149
BseNI	ACTGG	1 cut(s)	323
BseXI	GCAGC	2 cut(s)	55, 526
BseYI	CCCAGC	1 cut(s)	168
BsgI	GTGCAG	1 cut(s)	570
BshFI	GGCC	3 cut(s)	243, 447, 598
BsiHKAI	GWGCWC	1 cut(s)	232
BslFI	GGGAC	1 cut(s)	439
BslI	CCNNNNNNNGG	2 cut(s)	42, 64
BsmFI	GGGAC	1 cut(s)	439
BsnI	GGCC	3 cut(s)	243, 447, 598
Bsp1286I	GDGCHC	2 cut(s)	232, 385
Bsp143I	GATC	6 cut(s)	102, 186, 331, 462, 487, 534
BspANI	GGCC	3 cut(s)	243, 447, 598
BspLI	GGNNCC	2 cut(s)	382, 446
BspMI	ACCTGC	2 cut(s)	592, 598
BspPI	GGATC	3 cut(s)	97, 470, 482
BspQI	GCTCTTC	1 cut(s)	219
BsrDI	GCAATG	1 cut(s)	149
BsrI	ACTGG	1 cut(s)	323
BssECI	CCNNGG	1 cut(s)	223
BssMI	GATC	6 cut(s)	102, 186, 331, 462, 487, 534
Bst2UI	CCWGG	1 cut(s)	225
Bst4CI	ACNGT	1 cut(s)	262
Bst6I	CTCTTC	2 cut(s)	219, 618
BstC8I	GCNNGC	2 cut(s)	73, 528
BstDEI	CTNAG	3 cut(s)	343, 466, 633
BstF5I	GGATG	3 cut(s)	47, 51, 417
BstH2I	RGCGCY	1 cut(s)	343
BstHHI	GCGC	1 cut(s)	342
BstKTI	GATC	6 cut(s)	105, 189, 334, 465, 490, 537
BstMBI	GATC	6 cut(s)	102, 186, 331, 462, 487, 534
BstMWI	GCNNNNNNNGC	2 cut(s)	314, 536
BstNI	CCWGG	1 cut(s)	225
BstNSI	RCATGY	1 cut(s)	421
BstSCI	CCNGG	1 cut(s)	223
BstSFI	CTRYAG	1 cut(s)	201
BstV1I	GCAGC	2 cut(s)	55, 526
BstV2I	GAAGAC	1 cut(s)	615
BstX2I	RGATCY	4 cut(s)	102, 186, 462, 487
BstYI	RGATCY	4 cut(s)	102, 186, 462, 487
BsuRI	GGCC	3 cut(s)	243, 447, 598
BtsCI	GGATG	3 cut(s)	47, 51, 417
BveI	ACCTGC	2 cut(s)	592, 598
Cac8I	GCNNGC	2 cut(s)	73, 528
CaiI	CAGNNNCTG	1 cut(s)	329
CfoI	GCGC	1 cut(s)	342
Cfr13I	GGNCC	1 cut(s)	445
Csp6I	GTAC	1 cut(s)	141
CviAII	CATG	3 cut(s)	123, 256, 418
CviQI	GTAC	1 cut(s)	141
DdeI	CTNAG	3 cut(s)	343, 466, 633
DpnI	GATC	6 cut(s)	104, 188, 333, 464, 489, 536
DpnII	GATC	6 cut(s)	102, 186, 331, 462, 487, 534
Eam1104I	CTCTTC	2 cut(s)	219, 618
EarI	CTCTTC	2 cut(s)	219, 618
Ecl136II	GAGCTC	1 cut(s)	230
Eco147I	AGGCCT	1 cut(s)	598
Eco24I	GRGCYC	2 cut(s)	232, 385
Eco47III	AGCGCT	1 cut(s)	341
Eco53kI	GAGCTC	1 cut(s)	230
Eco57I	CTGAAG	1 cut(s)	599
EcoICRI	GAGCTC	1 cut(s)	230
EcoO109I	RGGNCCY	1 cut(s)	445
EcoRII	CCWGG	1 cut(s)	223
EcoT38I	GRGCYC	2 cut(s)	232, 385
FaeI	CATG	3 cut(s)	126, 259, 421
FaiI	YATR	9 cut(s)	124, 137, 257, 294, 419, 507, 521, 554, 561
FaqI	GGGAC	1 cut(s)	439
FatI	CATG	3 cut(s)	122, 255, 417
FblI	GTMKAC	1 cut(s)	510
Fnu4HI	GCNGC	2 cut(s)	69, 540
FokI	GGATG	3 cut(s)	54, 58, 424
FriOI	GRGCYC	2 cut(s)	232, 385
Fsp4HI	GCNGC	2 cut(s)	69, 540
FspBI	CTAG	1 cut(s)	594
GlaI	GCGC	1 cut(s)	341
GluI	GCNGC	2 cut(s)	69, 540
GsaI	CCCAGC	1 cut(s)	172
GsuI	CTGGAG	3 cut(s)	246, 320, 399
HaeII	RGCGCY	1 cut(s)	343
HaeIII	GGCC	3 cut(s)	243, 447, 598
HhaI	GCGC	1 cut(s)	342
Hin1II	CATG	3 cut(s)	126, 259, 421
Hin6I	GCGC	1 cut(s)	340
HinP1I	GCGC	1 cut(s)	340
Hpy166II	GTNNAC	3 cut(s)	141, 481, 511
Hpy188I	TCNGA	4 cut(s)	102, 116, 399, 618
Hpy8I	GTNNAC	3 cut(s)	141, 481, 511
Hpy99I	CGWCG	5 cut(s)	22, 25, 28, 31, 34
HpyAV	CCTTC	3 cut(s)	58, 452, 553
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4V	TGCA	6 cut(s)	126, 154, 236, 308, 587, 605
HpyF10VI	GCNNNNNNNGC	2 cut(s)	314, 536
HpyF3I	CTNAG	3 cut(s)	343, 466, 633
Hsp92II	CATG	3 cut(s)	126, 259, 421
HspAI	GCGC	1 cut(s)	340
Kzo9I	GATC	6 cut(s)	102, 186, 331, 462, 487, 534
LguI	GCTCTTC	1 cut(s)	219
LmnI	GCTCC	3 cut(s)	227, 360, 380
Lsp1109I	GCAGC	2 cut(s)	55, 526
LweI	GCATC	1 cut(s)	84
MaeI	CTAG	1 cut(s)	594
MaeIII	GTNAC	1 cut(s)	325
MalI	GATC	6 cut(s)	104, 188, 333, 464, 489, 536
MboI	GATC	6 cut(s)	102, 186, 331, 462, 487, 534
MboII	GAAGA	7 cut(s)	6, 156, 206, 580, 583, 605, 615
MflI	RGATCY	4 cut(s)	102, 186, 462, 487
MhlI	GDGCHC	2 cut(s)	232, 385
MluCI	AATT	1 cut(s)	438
MnlI	CCTC	6 cut(s)	254, 340, 402, 458, 612, 621
MseI	TTAA	1 cut(s)	437
MspA1I	CMGCKG	1 cut(s)	172
MspR9I	CCNGG	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	225
MwoI	GCNNNNNNNGC	2 cut(s)	314, 536
NdeII	GATC	6 cut(s)	102, 186, 331, 462, 487, 534
NlaIII	CATG	3 cut(s)	126, 259, 421
NlaIV	GGNNCC	2 cut(s)	382, 446
NspI	RCATGY	1 cut(s)	421
PaqCI	CACCTGC	1 cut(s)	598
PceI	AGGCCT	1 cut(s)	598
PciSI	GCTCTTC	1 cut(s)	219
PcsI	WCGNNNNNNNCGW	3 cut(s)	23, 26, 29
PflMI	CCANNNNNTGG	1 cut(s)	42
PkrI	GCNGC	2 cut(s)	70, 541
PshBI	ATTAAT	1 cut(s)	437
Psp124BI	GAGCTC	1 cut(s)	232
Psp6I	CCWGG	1 cut(s)	223
PspFI	CCCAGC	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	223
PspN4I	GGNNCC	2 cut(s)	382, 446
PspPI	GGNCC	1 cut(s)	445
PstNI	CAGNNNCTG	1 cut(s)	329
PsuI	RGATCY	4 cut(s)	102, 186, 462, 487
PvuII	CAGCTG	1 cut(s)	172
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
SacI	GAGCTC	1 cut(s)	232
SapI	GCTCTTC	1 cut(s)	219
SaqAI	TTAA	1 cut(s)	437
SatI	GCNGC	2 cut(s)	69, 540
Sau3AI	GATC	6 cut(s)	102, 186, 331, 462, 487, 534
Sau96I	GGNCC	1 cut(s)	445
ScrFI	CCNGG	1 cut(s)	225
SduI	GDGCHC	2 cut(s)	232, 385
SfaNI	GCATC	1 cut(s)	84
SfcI	CTRYAG	1 cut(s)	201
Sse9I	AATT	1 cut(s)	438
SseBI	AGGCCT	1 cut(s)	598
SspMI	CTAG	1 cut(s)	594
SstI	GAGCTC	1 cut(s)	232
StuI	AGGCCT	1 cut(s)	598
StyD4I	CCNGG	1 cut(s)	223
TaaI	ACNGT	1 cut(s)	262
TasI	AATT	1 cut(s)	438
Tru1I	TTAA	1 cut(s)	437
Tru9I	TTAA	1 cut(s)	437
TseI	GCWGC	2 cut(s)	68, 539
TspDTI	ATGAA	1 cut(s)	73
Van91I	CCANNNNNTGG	1 cut(s)	42
VspI	ATTAAT	1 cut(s)	437
XceI	RCATGY	1 cut(s)	421
XcmI	CCANNNNNNNNNTGG	1 cut(s)	43
XmiI	GTMKAC	1 cut(s)	510
XspI	CTAG	1 cut(s)	594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.