Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0015471

Physical Location & Seq

Genomic Coordinates Forward (+)

13753729 .. 13755810

Gene Structure 2082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2082 bp

ATGGAATTCGCGTACCTGAACCGAATAGTTACCGCTCTCCGCCACTGTGGCGGCCGATCTCAGGCCAATCACGGCAGAGCATTTCACTCCCAACTAATCAAGCTCGGCGCTTTGAATGACGTTTTTCTCGCTAACAATCTGATATCTATGTACGTCGCGTTTCCTTGTTTGAGTGACGCGCGGAAGGTGTTTGATGGAATGCCTGATAGGAACGTTGTGACATGGACGACAATGGTTTGTGGATATACTAATTGCGGAAAACCTGATAAGGCTGTGGGATTGTACACGCGGATGTTGGATTCTGAATCGGAGATGCCGAATGGGTTCATGTACTCTGCGGTGCTAAAAGCTTGTGGCTTGGTGGGTGACCTGAGAACGGGTAAATTGATTCATGAGAGGATATGTAGTGAGAGGTTGGAGTTTGACACTGTTTTGATGAATACCCTTTTGGACATGTACTTCAAATGTGGGAGTTTGAGTGATGCTCGGAGAGTTTTTGATGACATGTCGAGCAAAAACACGACTACGTGGAACACTATGGTTTCGGGGTATACTAAGGCTGGTTTGGTGGATGATGCAGTGTGTTTGTTTCATCAAATGCAAGAGCCGAATGTTGTATCTTGGAATAGCATTATTGCTGGTTTGGCGGATAATGGAAGTCCGCGTGCATTTGAATTCGTGTGTATAATGCACCGAGAAGGCCTCAAGTTAGATGGATTTACCTTCCCGTGCGCGCTTAAAACCTGTGGTCGACATGGTTTGTCAGCTTCTGGGAAACAAATCCACTGTTATGTTATAAAATCAGGTTTTGAATCAGGCATTTTTACTGTGTCGGCACTGGTTGATATGTACTCGAATGGCAATGAATTGACTGAAGCTGTAAAACTGTTTGATCAGCGTTCAAGGTGCTATGCTTCCACTTCTGATAGTTTGGCACTTTGGAATTCTATGCTTTCAGGATACGTCATTAACAAATGCAATAGTGCAGCTTTGGATTTAGTTTTGAAAATCCATTGCTCAGGTACTTGCATGGATTCCTACACTTTCAGTGGCGCTTTAAAGGCTTGTGTCAACTTACGCAACTTGCGACTCGGGCGTCAAGTGCACGGCTTGGTTGTAACCGCAGGGTATGAGTTAGATCATATTGTTGGAAGCATTCTTATAGACCTGCATGCAAGACTGGGGAATATTAATAATGCATTGGGATTGTTTCAAAGGCTTCCAAAGAAAGACGCCGTAGCTTGGACTGGTTTGATCATAGGGTGTGCAACAACGGGACAAAGCTGGCTAGCCTTTTCACTGTTTCGGGATATGGTGTATTTGGGTCTCGAAGTAGATCAATTTGTCCTTTCGTTTATTCTGAAAGTTTGCTCCAGTTTAACATCGCTTGGAAGCGGAAAACAGGTTCATGCTTTCTCTGTTAAGAGTGGATATGAGTCTGAGGAGGTTGTAGTGACATCCCTGCTCGATATGTACTCAAAATGTGGTGAAATTAACAATGCGTTAGCTCTGTTTGATTCTGTGGAAGAAAGAGACACCGTGTGTTGGACAGGGATAATTGTGGGGTGTGGGCAAAATGGAAGGGCAGAGGAAGCAATCAAATTTTTTAATGAGATGACAGAATCAGGATTGAAGCCAAACGAAATTACGTATTTAGGTGTTCTTTCTGCCTGTAGGCATGCTGGACTTGTAGAAGAGGCACGGACCATATTTAATTCCATGAAAATTGAACACGGACTGGGACCTCGTTTAGAGCATTATTATTGCATGGTTGACATTCTAGCTCAAGCTGGATGTTTTAAAGAGGCAGAGCAGTTGATTGCTAAGATGCCATTTGAGCCTGACCCAATCATATGGAGATCATTGCTCGTGGCCTGTGGAACTCATAAAAATACCGAACTTGTTAATGTTATTGCCGATCAGATTCTCACAACCTTACCAGAAGACCCTTCCACGTATGTGACGCTTTCGAATGTTTATGCAGAACTAGGAATGTGGGAAGATTTAAGCAAAGTTAGAATTGCCATCAAGAAAGTGAGTGCTAAAGAAGCAGGAAAGAGTTGGATTGAGATTTCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

694

Amino Acids

76.35

Weight (kDa)

6.13

Isoelectric Point (pI)

32.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	70 - 118	1e-06	PPR repeat family
PPR	PF01535	73 - 100	9.3e-06	PPR repeat
PPR_2	PF13041	172 - 201	4e-06	PPR repeat family
PPR_1	PF12854	173 - 201	8.3e-07	PPR repeat
PPR	PF01535	176 - 202	1.7e-07	PPR repeat
PPR_2	PF13041	511 - 558	3.5e-12	PPR repeat family
PPR	PF01535	514 - 544	8.1e-07	PPR repeat
E_motif	PF20431	629 - 690	2.5e-09	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0015471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08210
fragaria_vesca	FvH4_2g26350
malus_domestica	MD08G1169600.v1.1
prunus_persica	Prupe.1G503500_v2.0.a1 Prupe.1G503500_v2.0.a1
pyrus_communis	pycom08g14510
rosa_chinensis	RchiOBHm_Chr6g0294931
rosa_laevigata	RLG00000011826
rosa_multiflora	Rmu_sc0002700.1_g000046
rosa_roxburghii	Rroxscaffold_7G00172820
rosa_rugosa	Rorug06G0248400
rosa_samantha	Rh6AG361600 Rh6BG369100 Rh6CG375600 Rh6DG362100
rosa_wichuraiana	Rw6G031540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	797
AasI	GACNNNNNNGTC	1 cut(s)	1095
Acc36I	ACCTGC	1 cut(s)	1176
AccBSI	CCGCTC	1 cut(s)	35
AccI	GTMKAC	2 cut(s)	551, 751
AccII	CGCG	7 cut(s)	11, 158, 179, 181, 289, 664, 734
AclI	AACGTT	1 cut(s)	213
AcoI	YGGCCR	1 cut(s)	52
AcsI	RAATTY	4 cut(s)	5, 674, 943, 1601
AcuI	CTGAAG	1 cut(s)	894
AcyI	GRCGYC	2 cut(s)	1096, 1233
AdeI	CACNNNGTG	1 cut(s)	1542
AfaI	GTAC	8 cut(s)	14, 152, 284, 332, 458, 851, 1024, 1475
AfiI	CCNNNNNNNGG	4 cut(s)	61, 376, 1242, 1545
AflIII	ACRYGT	2 cut(s)	453, 504
AjuI	GAANNNNNNNTTGG	2 cut(s)	431, 463
AleI	CACNNNNGTG	1 cut(s)	1958
AloI	GAACNNNNNNTCC	2 cut(s)	1389, 1421
Alw21I	GWGCWC	1 cut(s)	1107
Alw26I	GTCTC	2 cut(s)	1331, 1527
Alw44I	GTGCAC	1 cut(s)	1103
AlwNI	CAGNNNCTG	1 cut(s)	770
Ama87I	CYCGRG	1 cut(s)	1091
AoxI	GGCC	4 cut(s)	52, 63, 700, 1872
ApaLI	GTGCAC	1 cut(s)	1103
ApeKI	GCWGC	1 cut(s)	986
ApoI	RAATTY	4 cut(s)	5, 674, 943, 1601
AseI	ATTAAT	1 cut(s)	1191
Asp700I	GAANNNNTTC	1 cut(s)	323
AspLEI	GCGC	5 cut(s)	110, 181, 734, 736, 1055
AspS9I	GGNCC	2 cut(s)	1704, 1742
AsuHPI	GGTGA	2 cut(s)	377, 1499
AsuII	TTCGAA	1 cut(s)	1970
AsuNHI	GCTAGC	1 cut(s)	1288
AvaI	CYCGRG	1 cut(s)	1091
AvaII	GGWCC	2 cut(s)	1704, 1742
BaeGI	GKGCMC	1 cut(s)	1107
BauI	CACGAG	1 cut(s)	1868
BbsI	GAAGAC	1 cut(s)	1950
Bbv12I	GWGCWC	1 cut(s)	1107
BbvI	GCAGC	1 cut(s)	998
BccI	CCATC	3 cut(s)	188, 707, 2033
BceAI	ACGGC	3 cut(s)	88, 1123, 1220
BciVI	GTATCC	1 cut(s)	953
BclI	TGATCA	2 cut(s)	892, 1254
BcoDI	GTCTC	2 cut(s)	1331, 1527
BfaI	CTAG	3 cut(s)	1289, 1781, 1988
BfmI	CTRYAG	1 cut(s)	1672
BfoI	RGCGCY	2 cut(s)	111, 1056
BfuAI	ACCTGC	1 cut(s)	1176
BfuI	GTATCC	1 cut(s)	953
BglI	GCCNNNNNGGC	1 cut(s)	48
BisI	GCNGC	2 cut(s)	52, 987
BlsI	GCNGC	2 cut(s)	53, 988
Bme18I	GGWCC	2 cut(s)	1704, 1742
BmeT110I	CYCGRG	1 cut(s)	1091
BmgT120I	GGNCC	2 cut(s)	1704, 1742
BmiI	GGNNCC	1 cut(s)	1743
BmrI	ACTGGG	2 cut(s)	1190, 1748
BmsI	GCATC	4 cut(s)	303, 472, 565, 1818
BmtI	GCTAGC	1 cut(s)	1292
BmuI	ACTGGG	2 cut(s)	1190, 1748
BpiI	GAAGAC	1 cut(s)	1950
BplI	GAGNNNNNCTC	4 cut(s)	469, 501, 687, 719
BpmI	CTGGAG	1 cut(s)	1357
Bpu10I	CCTNAGC	1 cut(s)	1018
Bpu14I	TTCGAA	1 cut(s)	1970
BpuEI	CTTGAG	2 cut(s)	689, 1770
BsaAI	YACGTR	3 cut(s)	528, 1650, 1956
BsaHI	GRCGYC	2 cut(s)	1096, 1233
BsaI	GGTCTC	1 cut(s)	1331
BsaXI	ACNNNNNCTCC	2 cut(s)	463, 493
Bsc4I	CCNNNNNNNGG	4 cut(s)	61, 376, 1242, 1545
Bse1I	ACTGG	5 cut(s)	843, 1185, 1252, 1374, 1743
Bse3DI	GCAATG	3 cut(s)	868, 1012, 1862
BseGI	GGATG	4 cut(s)	297, 577, 1457, 1799
BseLI	CCNNNNNNNGG	4 cut(s)	61, 376, 1242, 1545
BseMI	GCAATG	3 cut(s)	868, 1012, 1862
BseMII	CTCAG	4 cut(s)	74, 362, 1032, 1431
BseNI	ACTGG	5 cut(s)	843, 1185, 1252, 1374, 1743
BsePI	GCGCGC	1 cut(s)	732
BseRI	GAGGAG	1 cut(s)	1457
BseSI	GKGCMC	1 cut(s)	1107
BseX3I	CGGCCG	1 cut(s)	52
BseXI	GCAGC	1 cut(s)	998
BsgI	GTGCAG	1 cut(s)	1005
Bsh1236I	CGCG	7 cut(s)	11, 158, 179, 181, 289, 664, 734
Bsh1285I	CGRYCG	1 cut(s)	55
BshFI	GGCC	4 cut(s)	54, 65, 702, 1874
BsiEI	CGRYCG	1 cut(s)	55
BsiHKAI	GWGCWC	1 cut(s)	1107
BsiHKCI	CYCGRG	1 cut(s)	1091
BslFI	GGGAC	2 cut(s)	1290, 1755
BslI	CCNNNNNNNGG	4 cut(s)	61, 376, 1242, 1545
BsmAI	GTCTC	2 cut(s)	1331, 1527
BsmFI	GGGAC	2 cut(s)	1290, 1755
BsmI	GAATGC	2 cut(s)	204, 1155
BsnI	GGCC	4 cut(s)	54, 65, 702, 1874
Bso31I	GGTCTC	1 cut(s)	1331
BsoBI	CYCGRG	1 cut(s)	1091
Bsp119I	TTCGAA	1 cut(s)	1970
Bsp1286I	GDGCHC	1 cut(s)	1107
Bsp1407I	TGTACA	1 cut(s)	282
Bsp143I	GATC	7 cut(s)	56, 892, 1138, 1254, 1336, 1859, 1918
BspANI	GGCC	4 cut(s)	54, 65, 702, 1874
BspCNI	CTCAG	4 cut(s)	73, 363, 1031, 1432
BspFNI	CGCG	7 cut(s)	11, 158, 179, 181, 289, 664, 734
BspHI	TCATGA	1 cut(s)	391
BspLI	GGNNCC	1 cut(s)	1743
BspMI	ACCTGC	1 cut(s)	1176
BspOI	GCTAGC	1 cut(s)	1292
BspT104I	TTCGAA	1 cut(s)	1970
BspTNI	GGTCTC	1 cut(s)	1331
BsrBI	CCGCTC	1 cut(s)	35
BsrDI	GCAATG	3 cut(s)	868, 1012, 1862
BsrGI	TGTACA	1 cut(s)	282
BsrI	ACTGG	5 cut(s)	843, 1185, 1252, 1374, 1743
BssHII	GCGCGC	1 cut(s)	732
BssMI	GATC	7 cut(s)	56, 892, 1138, 1254, 1336, 1859, 1918
BssNAI	GTATAC	1 cut(s)	552
BssNI	GRCGYC	2 cut(s)	1096, 1233
BssSI	CACGAG	1 cut(s)	1868
Bst1107I	GTATAC	1 cut(s)	552
Bst2BI	CACGAG	1 cut(s)	1868
Bst4CI	ACNGT	7 cut(s)	47, 430, 788, 829, 888, 1302, 1540
Bst6I	CTCTTC	1 cut(s)	1689
BstACI	GRCGYC	2 cut(s)	1096, 1233
BstAUI	TGTACA	1 cut(s)	282
BstBAI	YACGTR	3 cut(s)	528, 1650, 1956
BstBI	TTCGAA	1 cut(s)	1970
BstC8I	GCNNGC	6 cut(s)	666, 734, 1173, 1286, 1290, 1680
BstDEI	CTNAG	6 cut(s)	60, 371, 555, 1018, 1440, 1824
BstEII	GGTNACC	1 cut(s)	365
BstF5I	GGATG	4 cut(s)	297, 577, 1457, 1799
BstFNI	CGCG	7 cut(s)	11, 158, 179, 181, 289, 664, 734
BstH2I	RGCGCY	2 cut(s)	111, 1056
BstHHI	GCGC	5 cut(s)	110, 181, 734, 736, 1055
BstKTI	GATC	7 cut(s)	59, 895, 1141, 1257, 1339, 1862, 1921
BstMAI	GTCTC	2 cut(s)	1331, 1527
BstMBI	GATC	7 cut(s)	56, 892, 1138, 1254, 1336, 1859, 1918
BstMCI	CGRYCG	1 cut(s)	55
BstMWI	GCNNNNNNNGC	8 cut(s)	48, 644, 1061, 1093, 1102, 1592, 1837, 2048
BstNSI	RCATGY	4 cut(s)	457, 508, 1175, 1682
BstPI	GGTNACC	1 cut(s)	365
BstSFI	CTRYAG	1 cut(s)	1672
BstSLI	GKGCMC	1 cut(s)	1107
BstSNI	TACGTA	1 cut(s)	1650
BstUI	CGCG	7 cut(s)	11, 158, 179, 181, 289, 664, 734
BstV1I	GCAGC	1 cut(s)	998
BstV2I	GAAGAC	1 cut(s)	1950
BstXI	CCANNNNNNTGG	1 cut(s)	1854
BstZ17I	GTATAC	1 cut(s)	552
BstZI	CGGCCG	1 cut(s)	52
BsuI	GTATCC	1 cut(s)	953
BsuRI	GGCC	4 cut(s)	54, 65, 702, 1874
BtgZI	GCGATG	1 cut(s)	1368
BtsCI	GGATG	4 cut(s)	297, 577, 1457, 1799
BtsI	GCAGTG	1 cut(s)	585
BtsIMutI	CAGTG	7 cut(s)	43, 426, 585, 784, 836, 1054, 1298
BveI	ACCTGC	1 cut(s)	1176
Cac8I	GCNNGC	6 cut(s)	666, 734, 1173, 1286, 1290, 1680
CaiI	CAGNNNCTG	1 cut(s)	770
CciI	TCATGA	1 cut(s)	391
CfoI	GCGC	5 cut(s)	110, 181, 734, 736, 1055
Cfr13I	GGNCC	2 cut(s)	1704, 1742
CseI	GACGC	4 cut(s)	185, 1085, 1241, 1972
Csp6I	GTAC	8 cut(s)	13, 151, 283, 331, 457, 850, 1023, 1474
CviQI	GTAC	8 cut(s)	13, 151, 283, 331, 457, 850, 1023, 1474
DdeI	CTNAG	6 cut(s)	60, 371, 555, 1018, 1440, 1824
DpnI	GATC	7 cut(s)	58, 894, 1140, 1256, 1338, 1861, 1920
DpnII	GATC	7 cut(s)	56, 892, 1138, 1254, 1336, 1859, 1918
DraI	TTTAAA	2 cut(s)	1059, 1801
DraIII	CACNNNGTG	1 cut(s)	1542
DrdI	GACNNNNNNGTC	1 cut(s)	1095
DseDI	GACNNNNNNGTC	1 cut(s)	1095
EaeI	YGGCCR	1 cut(s)	52
EagI	CGGCCG	1 cut(s)	52
Eam1104I	CTCTTC	1 cut(s)	1689
EarI	CTCTTC	1 cut(s)	1689
EciI	GGCGGA	2 cut(s)	29, 662
EclXI	CGGCCG	1 cut(s)	52
Eco105I	TACGTA	1 cut(s)	1650
Eco147I	AGGCCT	1 cut(s)	702
Eco31I	GGTCTC	1 cut(s)	1331
Eco32I	GATATC	1 cut(s)	144
Eco47I	GGWCC	2 cut(s)	1704, 1742
Eco52I	CGGCCG	1 cut(s)	52
Eco57I	CTGAAG	1 cut(s)	894
Eco88I	CYCGRG	1 cut(s)	1091
Eco91I	GGTNACC	1 cut(s)	365
EcoO109I	RGGNCCY	1 cut(s)	1742
EcoO65I	GGTNACC	1 cut(s)	365
EcoRI	GAATTC	3 cut(s)	5, 674, 943
EcoRV	GATATC	1 cut(s)	144
EcoT22I	ATGCAT	1 cut(s)	1201
FaqI	GGGAC	2 cut(s)	1290, 1755
FauNDI	CATATG	1 cut(s)	1853
FbaI	TGATCA	2 cut(s)	892, 1254
FblI	GTMKAC	2 cut(s)	551, 751
Fnu4HI	GCNGC	2 cut(s)	52, 987
FokI	GGATG	4 cut(s)	304, 584, 1444, 1806
Fsp4HI	GCNGC	2 cut(s)	52, 987
FspBI	CTAG	3 cut(s)	1289, 1781, 1988
GlaI	GCGC	5 cut(s)	109, 180, 733, 735, 1054
GluI	GCNGC	2 cut(s)	52, 987
GsuI	CTGGAG	1 cut(s)	1357
HaeII	RGCGCY	2 cut(s)	111, 1056
HaeIII	GGCC	4 cut(s)	54, 65, 702, 1874
HgaI	GACGC	4 cut(s)	185, 1085, 1241, 1972
HhaI	GCGC	5 cut(s)	110, 181, 734, 736, 1055
Hin1I	GRCGYC	2 cut(s)	1096, 1233
Hin6I	GCGC	5 cut(s)	108, 179, 732, 734, 1053
HinP1I	GCGC	5 cut(s)	108, 179, 732, 734, 1053
HincII	GTYRAC	3 cut(s)	752, 1072, 1774
HindII	GTYRAC	3 cut(s)	752, 1072, 1774
HindIII	AAGCTT	1 cut(s)	348
HphI	GGTGA	2 cut(s)	377, 1499
Hpy166II	GTNNAC	6 cut(s)	285, 552, 752, 1072, 1105, 1774
Hpy188I	TCNGA	8 cut(s)	141, 304, 310, 489, 925, 1362, 1441, 1923
Hpy188III	TCNNGA	6 cut(s)	392, 957, 1307, 1328, 1626, 2029
Hpy8I	GTNNAC	6 cut(s)	285, 552, 752, 1072, 1105, 1774
Hpy99I	CGWCG	1 cut(s)	158
HpyAV	CCTTC	5 cut(s)	178, 692, 733, 1575, 1959
HpyCH4III	ACNGT	7 cut(s)	47, 430, 788, 829, 888, 1302, 1540
HpyCH4IV	ACGT	7 cut(s)	120, 153, 213, 527, 963, 1649, 1955
HpyF10VI	GCNNNNNNNGC	8 cut(s)	48, 644, 1061, 1093, 1102, 1592, 1837, 2048
HpyF3I	CTNAG	6 cut(s)	60, 371, 555, 1018, 1440, 1824
HpySE526I	ACGT	7 cut(s)	120, 153, 213, 527, 963, 1649, 1955
Hsp92I	GRCGYC	2 cut(s)	1096, 1233
HspAI	GCGC	5 cut(s)	108, 179, 732, 734, 1053
Ksp22I	TGATCA	2 cut(s)	892, 1254
Kzo9I	GATC	7 cut(s)	56, 892, 1138, 1254, 1336, 1859, 1918
LmnI	GCTCC	1 cut(s)	1376
Lsp1109I	GCAGC	1 cut(s)	998
LweI	GCATC	4 cut(s)	303, 472, 565, 1818
MaeI	CTAG	3 cut(s)	1289, 1781, 1988
MaeII	ACGT	7 cut(s)	120, 153, 213, 527, 963, 1649, 1955
MaeIII	GTNAC	7 cut(s)	28, 173, 217, 365, 1117, 1453, 1960
MalI	GATC	7 cut(s)	58, 894, 1140, 1256, 1338, 1861, 1920
MbiI	CCGCTC	1 cut(s)	35
MboI	GATC	7 cut(s)	56, 892, 1138, 1254, 1336, 1859, 1918
MboII	GAAGA	4 cut(s)	1538, 1706, 1955, 2012
MhlI	GDGCHC	1 cut(s)	1107
MlyI	GAGTC	2 cut(s)	1083, 1445
MmeI	TCCRAC	5 cut(s)	276, 396, 1129, 1526, 2042
MnlI	CCTC	9 cut(s)	390, 405, 713, 1435, 1438, 1582, 1690, 1755, 1798
Mph1103I	ATGCAT	1 cut(s)	1201
MroXI	GAANNNNTTC	1 cut(s)	323
MslI	CAYNNNNRTG	3 cut(s)	290, 789, 1958
Mva1269I	GAATGC	2 cut(s)	204, 1155
MvnI	CGCG	7 cut(s)	11, 158, 179, 181, 289, 664, 734
MwoI	GCNNNNNNNGC	8 cut(s)	48, 644, 1061, 1093, 1102, 1592, 1837, 2048
NdeI	CATATG	1 cut(s)	1853
NdeII	GATC	7 cut(s)	56, 892, 1138, 1254, 1336, 1859, 1918
NheI	GCTAGC	1 cut(s)	1288
NlaIV	GGNNCC	1 cut(s)	1743
NmeAIII	GCCGAG	1 cut(s)	84
NmuCI	GTSAC	5 cut(s)	173, 217, 365, 1453, 1960
NsiI	ATGCAT	1 cut(s)	1201
NspI	RCATGY	4 cut(s)	457, 508, 1175, 1682
NspV	TTCGAA	1 cut(s)	1970
OliI	CACNNNNGTG	1 cut(s)	1958
PaeI	GCATGC	2 cut(s)	1175, 1682
PagI	TCATGA	1 cut(s)	391
PauI	GCGCGC	1 cut(s)	732
PceI	AGGCCT	1 cut(s)	702
PciI	ACATGT	2 cut(s)	453, 504
PcsI	WCGNNNNNNNCGW	2 cut(s)	314, 1084
PctI	GAATGC	2 cut(s)	204, 1155
PdmI	GAANNNNTTC	1 cut(s)	323
PfeI	GAWTC	8 cut(s)	299, 305, 388, 812, 1034, 1517, 1622, 1924
PkrI	GCNGC	2 cut(s)	53, 988
PleI	GAGTC	2 cut(s)	1083, 1444
PpsI	GAGTC	2 cut(s)	1083, 1444
Ppu21I	YACGTR	3 cut(s)	528, 1650, 1956
PpuMI	RGGWCCY	1 cut(s)	1742
PscI	ACATGT	2 cut(s)	453, 504
PshBI	ATTAAT	1 cut(s)	1191
PsiI	TTATAA	1 cut(s)	797
Psp1406I	AACGTT	1 cut(s)	213
Psp5II	RGGWCCY	1 cut(s)	1742
PspEI	GGTNACC	1 cut(s)	365
PspN4I	GGNNCC	1 cut(s)	1743
PspPI	GGNCC	2 cut(s)	1704, 1742
PspPPI	RGGWCCY	1 cut(s)	1742
PstNI	CAGNNNCTG	1 cut(s)	770
PteI	GCGCGC	1 cut(s)	732
RsaI	GTAC	8 cut(s)	14, 152, 284, 332, 458, 851, 1024, 1475
RsaNI	GTAC	8 cut(s)	13, 151, 283, 331, 457, 850, 1023, 1474
RseI	CAYNNNNRTG	3 cut(s)	290, 789, 1958
SalI	GTCGAC	1 cut(s)	750
SatI	GCNGC	2 cut(s)	52, 987
Sau3AI	GATC	7 cut(s)	56, 892, 1138, 1254, 1336, 1859, 1918
Sau96I	GGNCC	2 cut(s)	1704, 1742
SchI	GAGTC	2 cut(s)	1083, 1445
SduI	GDGCHC	1 cut(s)	1107
SfaNI	GCATC	4 cut(s)	303, 472, 565, 1818
SfcI	CTRYAG	1 cut(s)	1672
SfuI	TTCGAA	1 cut(s)	1970
SinI	GGWCC	2 cut(s)	1704, 1742
SmiMI	CAYNNNNRTG	3 cut(s)	290, 789, 1958
SmlI	CTYRAG	2 cut(s)	704, 1785
SmoI	CTYRAG	2 cut(s)	704, 1785
SnaBI	TACGTA	1 cut(s)	1650
SphI	GCATGC	2 cut(s)	1175, 1682
SseBI	AGGCCT	1 cut(s)	702
SspI	AATATT	1 cut(s)	1189
SspMI	CTAG	3 cut(s)	1289, 1781, 1988
StuI	AGGCCT	1 cut(s)	702
TaaI	ACNGT	7 cut(s)	47, 430, 788, 829, 888, 1302, 1540
TaiI	ACGT	7 cut(s)	123, 156, 216, 530, 966, 1652, 1958
TaqI	TCGA	6 cut(s)	509, 751, 854, 1329, 1467, 1970
TatI	WGTACW	5 cut(s)	282, 330, 456, 849, 1473
TauI	GCSGC	1 cut(s)	54
TfiI	GAWTC	8 cut(s)	299, 305, 388, 812, 1034, 1517, 1622, 1924
TscAI	CASTG	7 cut(s)	50, 433, 585, 791, 843, 1054, 1305
TseFI	GTSAC	5 cut(s)	173, 217, 365, 1453, 1960
TseI	GCWGC	1 cut(s)	986
Tsp45I	GTSAC	5 cut(s)	173, 217, 365, 1453, 1960
TspDTI	ATGAA	7 cut(s)	316, 380, 452, 581, 879, 1397, 1736
TspGWI	ACGGA	2 cut(s)	1717, 1749
TspRI	CASTG	7 cut(s)	50, 433, 585, 791, 843, 1054, 1305
VneI	GTGCAC	1 cut(s)	1103
VpaK11BI	GGWCC	2 cut(s)	1704, 1742
VspI	ATTAAT	1 cut(s)	1191
XapI	RAATTY	4 cut(s)	5, 674, 943, 1601
XceI	RCATGY	4 cut(s)	457, 508, 1175, 1682
XmiI	GTMKAC	2 cut(s)	551, 751
XmnI	GAANNNNTTC	1 cut(s)	323
XspI	CTAG	3 cut(s)	1289, 1781, 1988
Zsp2I	ATGCAT	1 cut(s)	1201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.