pycom08g17120

KIP1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0013242
Physical Location & Seq
Forward (+)
17289846 .. 17291709
1864 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1608 bp
ATGTCAGAAGGTGAAATTAAGAGAAAGAATGTTGCAATTCTCGAAACTTCTATCAAGGAGGAAGACGGAGAAGAAAAGCAATCAGACCAACCAACGCAGCAGGAACAGGGAGAGGCACAAGATTTGTCCGAGGATGTTAATCCACAGGAATTGGAACTGGAGAAGGAAAAACAGCCAAACTGGAGACAGCTGTTCCTAAAAGGGTTAGAGGATAGAGAAAAGGTTTTGCTGGAGGAGTATACTTCAATTCTCCGCGATTACAAGGATGCAAGGTGGAAGCTCGGCAAAGTGGAAAAGAAAAATCGGGATAACTTCTTCGATTTAGCAATGGAGATTAGGGAATTAAGGGGTGCTGTTGCCTCCAAAGACAATGAGACTAAACTTTTGAAGCAAAAACTCGGCTCCTCAGAAACAAATCCGGAGGACAGTCCTGCGACAGTATATAAATTTCCAACTCAGGAAGGCCCCCTTAAGAGTCCAACTCAAGTCGTTGCATCCCCATACTTAACTGTTGCATTACCAAATTTGGATAAAGAGATGATTTCCAGCTACCTTGGTGAACAAGGAACAGAGAAATTTGAGGACTCATCAGGAAACTCAAAGGTCTTATCAAGAAAGGAGGAAGAGAGAATAATGAGGAGAAGACATACTGTTAGACCCCATTTTGTTTCAGCAATAGAAGGAAGGTTCTGTTCAGGCATTGATGAGCGGTTGGAGGAAAATTTAGAATTTTGGCTGAGGTTTAGTACCTCGTCTGAGTTGTTGAAACTAAAGAACAAAAAGAAGCATGATGGATATGCTTTACAATCGGATGCTAAGCCAATATACCGACACCTAAGAGAGATACAAACGGAACTGTCATTATGGTTGAAATACAATGCAGTACTAAAAGATGACTTGCAGGGTATGTTATTATCCTTGTGCCATATTCAAGATGAGATATCGAGACTCTCCAGTTTAAGTTCCGAAGGTGAAAATATGGAGCTTATAAGCAAATATCAGGTGGCAAAGTTTCAAGGTGAGGTTCTCAACATGAAGCAGGAGAATAATAAGGTTGCAGATGAACTGCAGGTAGGCCTTAACCGTGTTGATGGACTCAAGGTTGAGGTCGAGAAGACACTAGCAAGACTCGATGGGGAACTTGGGATTTCGGTATCAAAGAGCATTAACAATCCCAAATGCTCAATGAGTAAGTCTCGAATTCCCTTGCGGTCTTTCTTGTTTGGGGTTAAGTTGAGAAGGCAAAGGCCATCAATCTTTTCCTGCGCCAGCCCGTCATTACAAAAACAACACAGTGATTTAGAAGCAGCTTTTGTAGCAATGCGTGCGCCAGCAGCAACTGCAGCGGCTCTTACCATACTATCAGTAAGCTTCGGTGTAGTTTTTGGCGATCATTGGAGCTTTTGTCGTGGAACCCGACAATCCTATGTGATATGTTTTCGCTGGGTTAAGGCCTTGCTGGGACTGCGGTTTTGCTTCAGCTTTCACTGGGTTAAGGCCTTGGGACTGCGGTTTAGCTTCAGCAGTGGTAAAATGCAGAGAGTTACTAGCTGCATTTGTTCCAGCAAGCTTGCTGTGTGTGCTTGTCCCAGCTGTTTACACGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0008092 GO:0016020 GO:0044464 GO:0044877 GO:0051015 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIP1

Protein Analysis

536

Amino Acids

60.86

Weight (kDa)

8.3

Isoelectric Point (pI)

54.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NET2A_C PF24918 253 - 384 6.4e-47 NET2A, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013242)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09720 AT1G58215
fragaria_vesca FvH4_5g34781
malus_domestica MD08G1198300.v1.1 MD15G1385600.v1.1
prunus_persica Prupe.1G532400_v2.0.a1
pyrus_communis pycom08g17090 pycom08g17120
rosa_chinensis RchiOBHm_Chr7g0235421
rosa_laevigata RLG00000001161
rosa_multiflora Rmu_sc0042260.1_g000001
rosa_roxburghii Rroxscaffold_3G00226040
rosa_rugosa Rorug07G0290800
rosa_samantha Rh7AG445300 Rh7BG417500 Rh7CG466000 Rh7DG434000
rosa_wichuraiana Rw7G037000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 989
Acc36I ACCTGC 1 cut(s) 1060
AccBSI CCGCTC 1 cut(s) 709
AccI GTMKAC 1 cut(s) 239
AccII CGCG 1 cut(s) 255
AccIII TCCGGA 1 cut(s) 418
AciI CCGC 6 cut(s) 253, 709, 1210, 1346, 1468, 1510
AcsI RAATTY 6 cut(s) 446, 523, 575, 721, 728, 1200
AcuI CTGAAG 2 cut(s) 1462, 1504
AfaI GTAC 2 cut(s) 748, 885
AflII CTTAAG 1 cut(s) 470
AgsI TTSAA 6 cut(s) 246, 388, 766, 871, 932, 1016
Alw26I GTCTC 4 cut(s) 178, 368, 940, 1200
AlwNI CAGNNNCTG 1 cut(s) 1340
Aor13HI TCCGGA 1 cut(s) 418
AoxI GGCC 5 cut(s) 463, 1075, 1247, 1452, 1497
ApeKI GCWGC 5 cut(s) 97, 1307, 1334, 1343, 1551
ApoI RAATTY 6 cut(s) 446, 523, 575, 721, 728, 1200
ArsI GACNNNNNNTTYG 4 cut(s) 367, 399, 1455, 1487
AspLEI GCGC 2 cut(s) 1268, 1330
AspS9I GGNCC 1 cut(s) 464
AsuHPI GGTGA 4 cut(s) 23, 569, 983, 1031
BbsI GAAGAC 3 cut(s) 69, 649, 1121
BbvCI CCTCAGC 1 cut(s) 737
BbvI GCAGC 5 cut(s) 109, 1319, 1346, 1355, 1538
BccI CCATC 4 cut(s) 785, 1085, 1127, 1258
BcoDI GTCTC 4 cut(s) 178, 368, 940, 1200
BfaI CTAG 2 cut(s) 1121, 1548
BfmI CTRYAG 2 cut(s) 1067, 1341
BfrI CTTAAG 1 cut(s) 470
BfuAI ACCTGC 1 cut(s) 1060
BisI GCNGC 6 cut(s) 98, 1308, 1335, 1344, 1347, 1552
BlpI GCTNAGC 1 cut(s) 816
BlsI GCNGC 6 cut(s) 99, 1309, 1336, 1345, 1348, 1553
BmcAI AGTACT 1 cut(s) 885
BmgT120I GGNCC 1 cut(s) 464
BmiI GGNNCC 3 cut(s) 403, 466, 1414
BmrI ACTGGG 1 cut(s) 1498
BmsI GCATC 3 cut(s) 256, 503, 802
BmuI ACTGGG 1 cut(s) 1498
BpiI GAAGAC 3 cut(s) 69, 649, 1121
BplI GAGNNNNNCTC 4 cut(s) 466, 498, 1180, 1212
BpmI CTGGAG 4 cut(s) 179, 202, 251, 937
Bpu10I CCTNAGC 1 cut(s) 737
Bpu1102I GCTNAGC 1 cut(s) 816
BpuEI CTTGAG 2 cut(s) 468, 1082
BsaBI GATNNNNATC 1 cut(s) 138
BsaJI CCNNGG 3 cut(s) 129, 553, 1500
BsaWI WCCGGW 1 cut(s) 418
BsaXI ACNNNNNCTCC 2 cut(s) 1390, 1420
Bse1I ACTGG 4 cut(s) 162, 185, 954, 1493
Bse3DI GCAATG 2 cut(s) 333, 1326
Bse8I GATNNNNATC 1 cut(s) 138
BseAI TCCGGA 1 cut(s) 418
BseDI CCNNGG 3 cut(s) 129, 553, 1500
BseGI GGATG 4 cut(s) 139, 271, 494, 817
BseJI GATNNNNATC 1 cut(s) 138
BseMI GCAATG 2 cut(s) 333, 1326
BseMII CTCAG 4 cut(s) 420, 470, 728, 747
BseNI ACTGG 4 cut(s) 162, 185, 954, 1493
BseRI GAGGAG 3 cut(s) 248, 394, 652
BseXI GCAGC 5 cut(s) 109, 1319, 1346, 1355, 1538
BseYI CCCAGC 3 cut(s) 1443, 1459, 1589
Bsh1236I CGCG 1 cut(s) 255
BshFI GGCC 5 cut(s) 465, 1077, 1249, 1454, 1499
BsiSI CCGG 1 cut(s) 419
BslFI GGGAC 3 cut(s) 1476, 1518, 1572
BsmAI GTCTC 4 cut(s) 178, 368, 940, 1200
BsmFI GGGAC 3 cut(s) 1476, 1518, 1572
BsnI GGCC 5 cut(s) 465, 1077, 1249, 1454, 1499
Bsp13I TCCGGA 1 cut(s) 418
Bsp143I GATC 1 cut(s) 1390
Bsp1720I GCTNAGC 1 cut(s) 816
BspACI CCGC 6 cut(s) 253, 709, 1210, 1346, 1468, 1510
BspANI GGCC 5 cut(s) 465, 1077, 1249, 1454, 1499
BspCNI CTCAG 4 cut(s) 419, 469, 729, 748
BspEI TCCGGA 1 cut(s) 418
BspFNI CGCG 1 cut(s) 255
BspLI GGNNCC 3 cut(s) 403, 466, 1414
BspMAI CTGCAG 2 cut(s) 1071, 1345
BspMI ACCTGC 1 cut(s) 1060
BspTI CTTAAG 1 cut(s) 470
BsrBI CCGCTC 1 cut(s) 709
BsrDI GCAATG 2 cut(s) 333, 1326
BsrI ACTGG 4 cut(s) 162, 185, 954, 1493
BssECI CCNNGG 3 cut(s) 129, 553, 1500
BssMI GATC 1 cut(s) 1390
BssNAI GTATAC 1 cut(s) 240
BssT1I CCWWGG 2 cut(s) 553, 1500
Bst1107I GTATAC 1 cut(s) 240
Bst4CI ACNGT 7 cut(s) 428, 439, 511, 652, 858, 1085, 1295
Bst6I CTCTTC 1 cut(s) 618
BstAFI CTTAAG 1 cut(s) 470
BstAPI GCANNNNNTGC 2 cut(s) 1325, 1340
BstC8I GCNNGC 5 cut(s) 1270, 1326, 1332, 1568, 1572
BstDEI CTNAG 6 cut(s) 406, 456, 737, 756, 816, 836
BstF5I GGATG 4 cut(s) 139, 271, 494, 817
BstFNI CGCG 1 cut(s) 255
BstHHI GCGC 2 cut(s) 1268, 1330
BstKTI GATC 1 cut(s) 1393
BstMAI GTCTC 4 cut(s) 178, 368, 940, 1200
BstMBI GATC 1 cut(s) 1390
BstMWI GCNNNNNNNGC 7 cut(s) 1316, 1325, 1334, 1340, 1343, 1465, 1580
BstSFI CTRYAG 2 cut(s) 1067, 1341
BstUI CGCG 1 cut(s) 255
BstV1I GCAGC 5 cut(s) 109, 1319, 1346, 1355, 1538
BstV2I GAAGAC 3 cut(s) 69, 649, 1121
BstZ17I GTATAC 1 cut(s) 240
BsuRI GGCC 5 cut(s) 465, 1077, 1249, 1454, 1499
BtsCI GGATG 4 cut(s) 139, 271, 494, 817
BtsI GCAGTG 1 cut(s) 1531
BtsIMutI CAGTG 3 cut(s) 1300, 1486, 1531
BveI ACCTGC 1 cut(s) 1060
Cac8I GCNNGC 5 cut(s) 1270, 1326, 1332, 1568, 1572
CaiI CAGNNNCTG 1 cut(s) 1340
CfoI GCGC 2 cut(s) 1268, 1330
Cfr13I GGNCC 1 cut(s) 464
Csp6I GTAC 2 cut(s) 747, 884
CspCI CAANNNNNGTGG 2 cut(s) 132, 167
CviAII CATG 2 cut(s) 788, 1033
CviQI GTAC 2 cut(s) 747, 884
DdeI CTNAG 6 cut(s) 406, 456, 737, 756, 816, 836
DpnI GATC 1 cut(s) 1392
DpnII GATC 1 cut(s) 1390
Eam1104I CTCTTC 1 cut(s) 618
EarI CTCTTC 1 cut(s) 618
Eco130I CCWWGG 2 cut(s) 553, 1500
Eco147I AGGCCT 3 cut(s) 1077, 1454, 1499
Eco32I GATATC 1 cut(s) 942
Eco57I CTGAAG 2 cut(s) 1462, 1504
EcoO109I RGGNCCY 1 cut(s) 464
EcoRI GAATTC 1 cut(s) 1200
EcoRV GATATC 1 cut(s) 942
EcoT14I CCWWGG 2 cut(s) 553, 1500
ErhI CCWWGG 2 cut(s) 553, 1500
FaeI CATG 2 cut(s) 791, 1036
FalI AAGNNNNNCTT 2 cut(s) 453, 485
FaqI GGGAC 3 cut(s) 1476, 1518, 1572
FatI CATG 2 cut(s) 787, 1032
FblI GTMKAC 1 cut(s) 239
Fnu4HI GCNGC 6 cut(s) 98, 1308, 1335, 1344, 1347, 1552
FokI GGATG 4 cut(s) 146, 278, 481, 824
Fsp4HI GCNGC 6 cut(s) 98, 1308, 1335, 1344, 1347, 1552
FspBI CTAG 2 cut(s) 1121, 1548
GlaI GCGC 2 cut(s) 1267, 1329
GluI GCNGC 6 cut(s) 98, 1308, 1335, 1344, 1347, 1552
GsaI CCCAGC 3 cut(s) 1447, 1463, 1593
GsuI CTGGAG 4 cut(s) 179, 202, 251, 937
HaeIII GGCC 5 cut(s) 465, 1077, 1249, 1454, 1499
HapII CCGG 1 cut(s) 419
HhaI GCGC 2 cut(s) 1268, 1330
Hin1II CATG 2 cut(s) 791, 1036
Hin6I GCGC 2 cut(s) 1266, 1328
HinP1I GCGC 2 cut(s) 1266, 1328
HindIII AAGCTT 2 cut(s) 1369, 1568
HinfI GANTC 5 cut(s) 475, 584, 948, 1095, 1128
HpaII CCGG 1 cut(s) 419
HphI GGTGA 4 cut(s) 23, 569, 983, 1031
Hpy166II GTNNAC 3 cut(s) 240, 560, 1598
Hpy188I TCNGA 7 cut(s) 7, 85, 130, 409, 757, 811, 967
Hpy8I GTNNAC 3 cut(s) 240, 560, 1598
HpyAV CCTTC 6 cut(s) 157, 455, 674, 678, 962, 1233
HpyCH4III ACNGT 7 cut(s) 428, 439, 511, 652, 858, 1085, 1295
HpyF10VI GCNNNNNNNGC 7 cut(s) 1316, 1325, 1334, 1340, 1343, 1465, 1580
HpyF3I CTNAG 6 cut(s) 406, 456, 737, 756, 816, 836
Hsp92II CATG 2 cut(s) 791, 1036
HspAI GCGC 2 cut(s) 1266, 1328
Kpn2I TCCGGA 1 cut(s) 418
Kzo9I GATC 1 cut(s) 1390
LmnI GCTCC 3 cut(s) 407, 982, 1398
Lsp1109I GCAGC 5 cut(s) 109, 1319, 1346, 1355, 1538
LweI GCATC 3 cut(s) 256, 503, 802
MaeI CTAG 2 cut(s) 1121, 1548
MaeIII GTNAC 1 cut(s) 1543
MalI GATC 1 cut(s) 1392
MbiI CCGCTC 1 cut(s) 709
MboI GATC 1 cut(s) 1390
MboII GAAGA 6 cut(s) 74, 83, 307, 635, 654, 1126
MlyI GAGTC 5 cut(s) 484, 578, 942, 1089, 1122
MmeI TCCRAC 3 cut(s) 476, 503, 693
MroI TCCGGA 1 cut(s) 418
MspA1I CMGCKG 3 cut(s) 190, 1346, 1593
MspCI CTTAAG 1 cut(s) 470
MspI CCGG 1 cut(s) 419
MvnI CGCG 1 cut(s) 255
MwoI GCNNNNNNNGC 7 cut(s) 1316, 1325, 1334, 1340, 1343, 1465, 1580
NdeII GATC 1 cut(s) 1390
NlaIII CATG 2 cut(s) 791, 1036
NlaIV GGNNCC 3 cut(s) 403, 466, 1414
NmeAIII GCCGAG 2 cut(s) 261, 378
PceI AGGCCT 3 cut(s) 1077, 1454, 1499
PcsI WCGNNNNNNNCGW 1 cut(s) 1414
PkrI GCNGC 6 cut(s) 99, 1309, 1336, 1345, 1348, 1553
PleI GAGTC 5 cut(s) 483, 578, 942, 1089, 1122
PpsI GAGTC 5 cut(s) 483, 578, 942, 1089, 1122
PsiI TTATAA 1 cut(s) 989
PspFI CCCAGC 3 cut(s) 1443, 1459, 1589
PspN4I GGNNCC 3 cut(s) 403, 466, 1414
PspPI GGNCC 1 cut(s) 464
PstI CTGCAG 2 cut(s) 1071, 1345
PstNI CAGNNNCTG 1 cut(s) 1340
PvuII CAGCTG 2 cut(s) 190, 1593
RsaI GTAC 2 cut(s) 748, 885
RsaNI GTAC 2 cut(s) 747, 884
SatI GCNGC 6 cut(s) 98, 1308, 1335, 1344, 1347, 1552
Sau3AI GATC 1 cut(s) 1390
Sau96I GGNCC 1 cut(s) 464
ScaI AGTACT 1 cut(s) 885
SchI GAGTC 5 cut(s) 484, 578, 942, 1089, 1122
SfaNI GCATC 3 cut(s) 256, 503, 802
SfcI CTRYAG 2 cut(s) 1067, 1341
SmlI CTYRAG 3 cut(s) 470, 483, 1097
SmoI CTYRAG 3 cut(s) 470, 483, 1097
SseBI AGGCCT 3 cut(s) 1077, 1454, 1499
SsiI CCGC 6 cut(s) 253, 709, 1210, 1346, 1468, 1510
SspMI CTAG 2 cut(s) 1121, 1548
StuI AGGCCT 3 cut(s) 1077, 1454, 1499
StyI CCWWGG 2 cut(s) 553, 1500
TaaI ACNGT 7 cut(s) 428, 439, 511, 652, 858, 1085, 1295
TaqI TCGA 6 cut(s) 42, 318, 944, 1110, 1131, 1198
TatI WGTACW 1 cut(s) 883
TauI GCSGC 1 cut(s) 1349
TscAI CASTG 3 cut(s) 1300, 1493, 1531
TseI GCWGC 5 cut(s) 97, 1307, 1334, 1343, 1551
TspDTI ATGAA 2 cut(s) 1049, 1077
TspGWI ACGGA 2 cut(s) 81, 866
TspRI CASTG 3 cut(s) 1300, 1493, 1531
Vha464I CTTAAG 1 cut(s) 470
XapI RAATTY 6 cut(s) 446, 523, 575, 721, 728, 1200
XmiI GTMKAC 1 cut(s) 239
XspI CTAG 2 cut(s) 1121, 1548
ZrmI AGTACT 1 cut(s) 885
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.