Rmu_sc0042260.1_g000001

KIP1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0042260.1
OG0013242
Physical Location & Seq
Forward (+)
1 .. 1764
1764 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0042260.1_g000001.1.cds

Sequence Viewer

Length: 1723 bp
attaaaatcagaaacagatgaacttcaggcacaagttcggagcttggaagaggaaaaggaaatactgagggaaagtgaggacaatttgaaaagaaagctaaaggagatggaagaggagttgcgtagagttaagaacttaaaaaggagtgtagaaaaccaaaatatcaacctcgaactgcatttcacagaagcttgtagtaatctcgataatctctctacaaaattgcaaaatgtgaagcatgatgtggaggatgagagtgctgtactattccaggaattgagagcagtagataacaaaccagaggagttgaaagatgattcagataagcccgctggtcatgatgaagaagaagtttcaaaatctgtcaagggtgaagaagaggaaaacaaaacttatacaagaaatagccttgatttgtctcaagaagcactgccgcaggaagagggtgagagcaatcttgttgagccacaggagttggagcaggaaaatgaagaaaatcaacccaactggaggcaattattcctaaaaggtttagaggatagagagaagattctgctggaagagtatacttcaattcttcgggattataaggaagcaaggaagaagctcagtgaagctgagaagaaaaaccgggataacatctttgatttggcaatggagataagggatttgaggagtataattgcttcaaaggacaaagaaattagacttctaaagcaaaaacagaaccccacagacatgaatcctgaagaaagtccatgttcgacagtgtataagtacccgaataatgatgtccccttggagagcccaagtcaagttgtcacacccccatactctactggtccatcaccctatgtggataaagacacacttgccgaaattcttcgtgaaacctcagaaaaattcgattactcatcaggaaacttgaaggtcacgcctagaaaggaggaagagaaaacaatcaggaaaaggcatgctgttagaccccattccttttcagctattgaaggaagattccgtgcagacattgatgaactgctggaggagaacctagaattctggttgaggtttagtacctcaattcatcagatacaaaagttccagacttcaattcatgacttacagtcagagttgataaaaatgaagaagcatgctctagaatcagatggcaagccgatatatagacacctgagagagatacaaactgaattgtcattatggctggaacataatgcagtgctgaaggaggacttgcagagcaggtactcatctttgtgccacattcaagatgagatatcgagactctcgaatttaagttccgaaggggagaagacagagcttataagcaaataccaggcagcaaagtttcaaggcgagattctgaacatgaagcaggagaacctcaaagttgcagaagaattgaaggcaggtcttaaccgtgttaaaggactcaaagttgaggtcgagaagacactagcaaaacttgatgaggaacttgggatgtcggcatcaaatggtgatcaacctaaacgaagtaaggctcgaattcccttgcggtctttcttgtttggtgtcaagttaagacaaaaaaagccatcactcttctcgggccagcaatcactcttctcatgcgctagcccggcattacagaaacaatacagcgatgtgtcggaagctgaacaacctccaccacaaccacaatctccaccacaagcaatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0008092 GO:0016020 GO:0044464 GO:0044877 GO:0051015 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIP1

Protein Analysis

573

Amino Acids

66.2

Weight (kDa)

5.22

Isoelectric Point (pI)

68.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013242)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09720 AT1G58215
fragaria_vesca FvH4_5g34781
malus_domestica MD08G1198300.v1.1 MD15G1385600.v1.1
prunus_persica Prupe.1G532400_v2.0.a1
pyrus_communis pycom08g17090 pycom08g17120
rosa_chinensis RchiOBHm_Chr7g0235421
rosa_laevigata RLG00000001161
rosa_multiflora Rmu_sc0042260.1_g000001
rosa_roxburghii Rroxscaffold_3G00226040
rosa_rugosa Rorug07G0290800
rosa_samantha Rh7AG445300 Rh7BG417500 Rh7CG466000 Rh7DG434000
rosa_wichuraiana Rw7G037000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 589, 1344
Acc36I ACCTGC 2 cut(s) 1252, 1419
AccI GTMKAC 1 cut(s) 567
AciI CCGC 3 cut(s) 331, 435, 1556
AcsI RAATTY 5 cut(s) 880, 903, 1056, 1310, 1546
AcuI CTGAAG 3 cut(s) 9, 769, 1263
AfaI GTAC 4 cut(s) 265, 780, 1076, 1266
AfiI CCNNNNNNNGG 1 cut(s) 511
AhdI GACNNNNNGTC 1 cut(s) 1124
AjnI CCWGG 2 cut(s) 271, 1354
AluBI AGCT 8 cut(s) 43, 98, 192, 608, 618, 1002, 1340, 1677
AluI AGCT 8 cut(s) 43, 98, 192, 608, 618, 1002, 1340, 1677
Alw26I GTCTC 2 cut(s) 424, 1295
Ama87I CYCGRG 1 cut(s) 1607
AoxI GGCC 1 cut(s) 1610
ApeKI GCWGC 1 cut(s) 1359
ApoI RAATTY 5 cut(s) 880, 903, 1056, 1310, 1546
ArsI GACNNNNNNTTYG 2 cut(s) 1447, 1479
Asp700I GAANNNNTTC 1 cut(s) 883
AspLEI GCGC 1 cut(s) 1635
AspS9I GGNCC 2 cut(s) 843, 1610
AsuC2I CCSGG 2 cut(s) 633, 1641
AsuHPI GGTGA 4 cut(s) 384, 459, 841, 1530
AsuNHI GCTAGC 1 cut(s) 1635
AvaI CYCGRG 1 cut(s) 1607
AvaII GGWCC 1 cut(s) 843
BaeI ACNNNNGTAYC 2 cut(s) 1083, 1116
BanII GRGCYC 1 cut(s) 810
BarI GAAGNNNNNNTAC 2 cut(s) 671, 703
BbsI GAAGAC 2 cut(s) 1338, 1476
BbvI GCAGC 1 cut(s) 1371
BccI CCATC 4 cut(s) 101, 854, 1161, 1604
BciT130I CCWGG 2 cut(s) 273, 1356
BclI TGATCA 1 cut(s) 1520
BcnI CCSGG 2 cut(s) 633, 1641
BcoDI GTCTC 2 cut(s) 424, 1295
BfaI CTAG 5 cut(s) 940, 1053, 1158, 1476, 1636
BfuAI ACCTGC 2 cut(s) 1252, 1419
BisI GCNGC 2 cut(s) 435, 1360
BlsI GCNGC 2 cut(s) 436, 1361
Bme1390I CCNGG 4 cut(s) 273, 633, 1356, 1641
Bme18I GGWCC 1 cut(s) 843
BmeRI GACNNNNNGTC 1 cut(s) 1124
BmeT110I CYCGRG 1 cut(s) 1607
BmgT120I GGNCC 2 cut(s) 843, 1610
BmrFI CCNGG 4 cut(s) 273, 633, 1356, 1641
BmsI GCATC 1 cut(s) 1518
BmtI GCTAGC 1 cut(s) 1639
BpiI GAAGAC 2 cut(s) 1338, 1476
BpmI CTGGAG 2 cut(s) 530, 1062
BpuEI CTTGAG 1 cut(s) 406
BpuMI CCSGG 2 cut(s) 633, 1641
BsaJI CCNNGG 1 cut(s) 799
Bsc4I CCNNNNNNNGG 1 cut(s) 511
Bse1I ACTGG 2 cut(s) 513, 845
Bse3DI GCAATG 2 cut(s) 661, 1723
BseBI CCWGG 2 cut(s) 273, 1356
BseDI CCNNGG 1 cut(s) 799
BseGI GGATG 2 cut(s) 257, 1507
BseLI CCNNNNNNNGG 1 cut(s) 511
BseMI GCAATG 2 cut(s) 661, 1723
BseMII CTCAG 5 cut(s) 57, 610, 623, 910, 1182
BseNI ACTGG 2 cut(s) 513, 845
BseRI GAGGAG 4 cut(s) 129, 318, 689, 1059
BseXI GCAGC 1 cut(s) 1371
BsgI GTGCAG 1 cut(s) 1042
BshFI GGCC 1 cut(s) 1612
BsiHKCI CYCGRG 1 cut(s) 1607
BsiSI CCGG 2 cut(s) 632, 1641
BslFI GGGAC 1 cut(s) 780
BslI CCNNNNNNNGG 1 cut(s) 511
BsmAI GTCTC 2 cut(s) 424, 1295
BsmFI GGGAC 1 cut(s) 780
BsnI GGCC 1 cut(s) 1612
BsoBI CYCGRG 1 cut(s) 1607
Bsp1286I GDGCHC 1 cut(s) 810
Bsp143I GATC 1 cut(s) 1520
BspACI CCGC 3 cut(s) 331, 435, 1556
BspANI GGCC 1 cut(s) 1612
BspCNI CTCAG 5 cut(s) 58, 611, 622, 909, 1183
BspHI TCATGA 2 cut(s) 338, 1115
BspMI ACCTGC 2 cut(s) 1252, 1419
BspOI GCTAGC 1 cut(s) 1639
BsrDI GCAATG 2 cut(s) 661, 1723
BsrI ACTGG 2 cut(s) 513, 845
BssECI CCNNGG 1 cut(s) 799
BssMI GATC 1 cut(s) 1520
BssNAI GTATAC 1 cut(s) 568
BssT1I CCWWGG 1 cut(s) 799
Bst1107I GTATAC 1 cut(s) 568
Bst2UI CCWGG 2 cut(s) 273, 1356
Bst4CI ACNGT 3 cut(s) 770, 1126, 1440
Bst6I CTCTTC 8 cut(s) 43, 106, 373, 436, 556, 946, 1608, 1629
BstC8I GCNNGC 6 cut(s) 331, 976, 1153, 1173, 1614, 1637
BstDEI CTNAG 5 cut(s) 66, 609, 619, 896, 1191
BstF5I GGATG 2 cut(s) 257, 1507
BstHHI GCGC 1 cut(s) 1635
BstKTI GATC 1 cut(s) 1523
BstMAI GTCTC 2 cut(s) 424, 1295
BstMBI GATC 1 cut(s) 1520
BstMWI GCNNNNNNNGC 1 cut(s) 1641
BstNI CCWGG 2 cut(s) 273, 1356
BstNSI RCATGY 2 cut(s) 978, 1155
BstSCI CCNGG 4 cut(s) 271, 631, 1354, 1639
BstV1I GCAGC 1 cut(s) 1371
BstV2I GAAGAC 2 cut(s) 1338, 1476
BstZ17I GTATAC 1 cut(s) 568
BsuRI GGCC 1 cut(s) 1612
BtgZI GCGATG 1 cut(s) 1678
BtsCI GGATG 2 cut(s) 257, 1507
BtsI GCAGTG 2 cut(s) 429, 1243
BtsIMutI CAGTG 4 cut(s) 429, 617, 775, 1243
BveI ACCTGC 2 cut(s) 1252, 1419
Cac8I GCNNGC 6 cut(s) 331, 976, 1153, 1173, 1614, 1637
CciI TCATGA 2 cut(s) 338, 1115
CfoI GCGC 1 cut(s) 1635
Cfr13I GGNCC 2 cut(s) 843, 1610
Csp6I GTAC 4 cut(s) 264, 779, 1075, 1265
CspCI CAANNNNNGTGG 2 cut(s) 457, 492
CviAII CATG 9 cut(s) 240, 339, 740, 760, 975, 1116, 1152, 1388, 1630
CviQI GTAC 4 cut(s) 264, 779, 1075, 1265
DdeI CTNAG 5 cut(s) 66, 609, 619, 896, 1191
DpnI GATC 1 cut(s) 1522
DpnII GATC 1 cut(s) 1520
DriI GACNNNNNGTC 1 cut(s) 1124
Eam1104I CTCTTC 8 cut(s) 43, 106, 373, 436, 556, 946, 1608, 1629
Eam1105I GACNNNNNGTC 1 cut(s) 1124
EarI CTCTTC 8 cut(s) 43, 106, 373, 436, 556, 946, 1608, 1629
Eco130I CCWWGG 1 cut(s) 799
Eco24I GRGCYC 1 cut(s) 810
Eco32I GATATC 1 cut(s) 1297
Eco47I GGWCC 1 cut(s) 843
Eco57I CTGAAG 3 cut(s) 9, 769, 1263
Eco88I CYCGRG 1 cut(s) 1607
EcoRI GAATTC 2 cut(s) 1056, 1546
EcoRII CCWGG 2 cut(s) 271, 1354
EcoRV GATATC 1 cut(s) 1297
EcoT14I CCWWGG 1 cut(s) 799
EcoT38I GRGCYC 1 cut(s) 810
ErhI CCWWGG 1 cut(s) 799
FaeI CATG 9 cut(s) 243, 342, 743, 763, 978, 1119, 1155, 1391, 1633
FalI AAGNNNNNCTT 4 cut(s) 856, 888, 1236, 1268
FaqI GGGAC 1 cut(s) 780
FatI CATG 9 cut(s) 239, 338, 739, 759, 974, 1115, 1151, 1387, 1629
FauI CCCGC 1 cut(s) 338
FbaI TGATCA 1 cut(s) 1520
FblI GTMKAC 1 cut(s) 567
Fnu4HI GCNGC 2 cut(s) 435, 1360
FokI GGATG 2 cut(s) 264, 1514
FriOI GRGCYC 1 cut(s) 810
Fsp4HI GCNGC 2 cut(s) 435, 1360
FspBI CTAG 5 cut(s) 940, 1053, 1158, 1476, 1636
GlaI GCGC 1 cut(s) 1634
GluI GCNGC 2 cut(s) 435, 1360
GsuI CTGGAG 2 cut(s) 530, 1062
HaeIII GGCC 1 cut(s) 1612
HapII CCGG 2 cut(s) 632, 1641
HhaI GCGC 1 cut(s) 1635
Hin1II CATG 9 cut(s) 243, 342, 743, 763, 978, 1119, 1155, 1391, 1633
Hin6I GCGC 1 cut(s) 1633
HinP1I GCGC 1 cut(s) 1633
HindIII AAGCTT 1 cut(s) 190
HinfI GANTC 8 cut(s) 318, 551, 743, 1015, 1161, 1303, 1379, 1450
HpaII CCGG 2 cut(s) 632, 1641
HphI GGTGA 4 cut(s) 384, 459, 841, 1530
Hpy166II GTNNAC 1 cut(s) 568
Hpy8I GTNNAC 1 cut(s) 568
HpyAV CCTTC 5 cut(s) 923, 1002, 1238, 1317, 1418
HpyCH4III ACNGT 3 cut(s) 770, 1126, 1440
HpyCH4V TGCA 6 cut(s) 179, 227, 1023, 1236, 1256, 1413
HpyF10VI GCNNNNNNNGC 1 cut(s) 1641
HpyF3I CTNAG 5 cut(s) 66, 609, 619, 896, 1191
Hsp92II CATG 9 cut(s) 243, 342, 743, 763, 978, 1119, 1155, 1391, 1633
HspAI GCGC 1 cut(s) 1633
Ksp22I TGATCA 1 cut(s) 1520
Kzo9I GATC 1 cut(s) 1520
LmnI GCTCC 2 cut(s) 40, 479
Lsp1109I GCAGC 1 cut(s) 1371
LweI GCATC 1 cut(s) 1518
MaeI CTAG 5 cut(s) 940, 1053, 1158, 1476, 1636
MaeIII GTNAC 2 cut(s) 821, 932
MalI GATC 1 cut(s) 1522
MboI GATC 1 cut(s) 1520
MhlI GDGCHC 1 cut(s) 810
MlyI GAGTC 2 cut(s) 1297, 1444
MmeI TCCRAC 2 cut(s) 457, 1651
MroXI GAANNNNTTC 1 cut(s) 883
MseI TTAA 7 cut(s) 3, 130, 138, 1314, 1435, 1444, 1581
MslI CAYNNNNRTG 2 cut(s) 738, 1274
MspA1I CMGCKG 1 cut(s) 333
MspI CCGG 2 cut(s) 632, 1641
MspR9I CCNGG 4 cut(s) 273, 633, 1356, 1641
MvaI CCWGG 2 cut(s) 273, 1356
MwoI GCNNNNNNNGC 1 cut(s) 1641
NciI CCSGG 2 cut(s) 633, 1641
NdeII GATC 1 cut(s) 1520
NheI GCTAGC 1 cut(s) 1635
NlaIII CATG 9 cut(s) 243, 342, 743, 763, 978, 1119, 1155, 1391, 1633
NmuCI GTSAC 2 cut(s) 821, 932
NspI RCATGY 2 cut(s) 978, 1155
PaeI GCATGC 2 cut(s) 978, 1155
PagI TCATGA 2 cut(s) 338, 1115
PcsI WCGNNNNNNNCGW 1 cut(s) 1305
PdmI GAANNNNTTC 1 cut(s) 883
PfeI GAWTC 6 cut(s) 318, 551, 743, 1015, 1161, 1379
PfoI TCCNGGA 1 cut(s) 271
PkrI GCNGC 2 cut(s) 436, 1361
PleI GAGTC 2 cut(s) 1297, 1444
PpsI GAGTC 2 cut(s) 1297, 1444
PsiI TTATAA 2 cut(s) 589, 1344
Psp6I CCWGG 2 cut(s) 271, 1354
PspGI CCWGG 2 cut(s) 271, 1354
PspPI GGNCC 2 cut(s) 843, 1610
RsaI GTAC 4 cut(s) 265, 780, 1076, 1266
RsaNI GTAC 4 cut(s) 264, 779, 1075, 1265
RseI CAYNNNNRTG 2 cut(s) 738, 1274
SaqAI TTAA 7 cut(s) 3, 130, 138, 1314, 1435, 1444, 1581
SatI GCNGC 2 cut(s) 435, 1360
Sau3AI GATC 1 cut(s) 1520
Sau96I GGNCC 2 cut(s) 843, 1610
SchI GAGTC 2 cut(s) 1297, 1444
ScrFI CCNGG 4 cut(s) 273, 633, 1356, 1641
SduI GDGCHC 1 cut(s) 810
SfaNI GCATC 1 cut(s) 1518
SinI GGWCC 1 cut(s) 843
SmiMI CAYNNNNRTG 2 cut(s) 738, 1274
SmlI CTYRAG 1 cut(s) 421
SmoI CTYRAG 1 cut(s) 421
SphI GCATGC 2 cut(s) 978, 1155
SsiI CCGC 3 cut(s) 331, 435, 1556
SspMI CTAG 5 cut(s) 940, 1053, 1158, 1476, 1636
StyD4I CCNGG 4 cut(s) 271, 631, 1354, 1639
StyI CCWWGG 1 cut(s) 799
TaaI ACNGT 3 cut(s) 770, 1126, 1440
TaqI TCGA 8 cut(s) 172, 205, 765, 907, 1299, 1308, 1465, 1544
TatI WGTACW 1 cut(s) 263
TauI GCSGC 1 cut(s) 437
TfiI GAWTC 6 cut(s) 318, 551, 743, 1015, 1161, 1379
Tru1I TTAA 7 cut(s) 3, 130, 138, 1314, 1435, 1444, 1581
Tru9I TTAA 7 cut(s) 3, 130, 138, 1314, 1435, 1444, 1581
TscAI CASTG 4 cut(s) 436, 617, 775, 1243
TseFI GTSAC 2 cut(s) 821, 932
TseI GCWGC 1 cut(s) 1359
Tsp45I GTSAC 2 cut(s) 821, 932
TspDTI ATGAA 9 cut(s) 34, 358, 505, 756, 1048, 1074, 1104, 1158, 1404
TspGWI ACGGA 1 cut(s) 1008
TspRI CASTG 4 cut(s) 436, 617, 775, 1243
VpaK11BI GGWCC 1 cut(s) 843
XapI RAATTY 5 cut(s) 880, 903, 1056, 1310, 1546
XbaI TCTAGA 1 cut(s) 1157
XceI RCATGY 2 cut(s) 978, 1155
XmiI GTMKAC 1 cut(s) 567
XmnI GAANNNNTTC 1 cut(s) 883
XspI CTAG 5 cut(s) 940, 1053, 1158, 1476, 1636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.