Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0019824

Physical Location & Seq

Genomic Coordinates Reverse (-)

18874914 .. 18875668

Gene Structure 755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g18780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGCCACCATCTTGTTCGCGTTCCATCCCAAGAGGCATTTCTGTATCTCTAATCCAAATATTCATACCTAAAACATTAGCATATGGTGAACAACTTCATGCACATATAGTCCGATTGAGGTTTGAACGACATCCCATTTTGGTTCCCAAGCTGGTTACATTTTACTCAAGCTTTAATCTTCATGCCGATGCTCGTAGCTGGAATTTATTTGTACATGATTCATTGGTCTCCATGTATGGGAAATTCGGGCTTCTCGACGTTGCTGGCCGCTTATTTGACAATATGGCCACAAGGGATGCAATTTCTTGGAATGCAATGATCTCTAGTTATGCCTCCAATGGCATGTGGATGGATGCATTTGAGGGGTGCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

125

Amino Acids

14.01

Weight (kDa)

8.71

Isoelectric Point (pI)

49.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019824)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g18780
rosa_chinensis	RchiOBHm_Chr1g0379121
rosa_laevigata	RLG00000016230
rosa_multiflora	Rmu_sc0002407.1_g000008
rosa_roxburghii	Rroxscaffold_2G00149990
rosa_samantha	Rh2AG063300 Rh2DG062800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	19
AciI	CCGC	1 cut(s)	268
AcoI	YGGCCR	2 cut(s)	265, 285
AcsI	RAATTY	2 cut(s)	202, 242
AfaI	GTAC	1 cut(s)	213
AfiI	CCNNNNNNNGG	1 cut(s)	237
AgsI	TTSAA	1 cut(s)	125
AjuI	GAANNNNNNNTTGG	2 cut(s)	22, 54
AluBI	AGCT	3 cut(s)	151, 171, 198
AluI	AGCT	3 cut(s)	151, 171, 198
Alw21I	GWGCWC	1 cut(s)	371
Alw26I	GTCTC	1 cut(s)	232
Alw44I	GTGCAC	1 cut(s)	367
AoxI	GGCC	2 cut(s)	265, 285
ApaLI	GTGCAC	1 cut(s)	367
ApoI	RAATTY	2 cut(s)	202, 242
Asp700I	GAANNNNTTC	1 cut(s)	93
AsuHPI	GGTGA	1 cut(s)	98
BaeGI	GKGCMC	1 cut(s)	371
BalI	TGGCCA	1 cut(s)	287
Bbv12I	GWGCWC	1 cut(s)	371
BccI	CCATC	3 cut(s)	16, 32, 343
BcoDI	GTCTC	1 cut(s)	232
BfaI	CTAG	1 cut(s)	324
BisI	GCNGC	1 cut(s)	268
BlsI	GCNGC	1 cut(s)	269
BmiI	GGNNCC	1 cut(s)	144
BmsI	GCATC	3 cut(s)	178, 286, 343
BpuEI	CTTGAG	1 cut(s)	151
BsaI	GGTCTC	1 cut(s)	232
Bsc4I	CCNNNNNNNGG	1 cut(s)	237
Bse3DI	GCAATG	1 cut(s)	321
BseGI	GGATG	5 cut(s)	24, 130, 301, 354, 358
BseLI	CCNNNNNNNGG	1 cut(s)	237
BseMI	GCAATG	1 cut(s)	321
BseSI	GKGCMC	1 cut(s)	371
Bsh1236I	CGCG	1 cut(s)	19
BshFI	GGCC	2 cut(s)	267, 287
BsiHKAI	GWGCWC	1 cut(s)	371
BslI	CCNNNNNNNGG	1 cut(s)	237
BsmAI	GTCTC	1 cut(s)	232
BsmI	GAATGC	1 cut(s)	316
BsnI	GGCC	2 cut(s)	267, 287
Bso31I	GGTCTC	1 cut(s)	232
Bsp1286I	GDGCHC	1 cut(s)	371
Bsp1407I	TGTACA	1 cut(s)	211
Bsp143I	GATC	1 cut(s)	318
BspACI	CCGC	1 cut(s)	268
BspANI	GGCC	2 cut(s)	267, 287
BspFNI	CGCG	1 cut(s)	19
BspLI	GGNNCC	1 cut(s)	144
BspTNI	GGTCTC	1 cut(s)	232
BsrDI	GCAATG	1 cut(s)	321
BsrGI	TGTACA	1 cut(s)	211
BssMI	GATC	1 cut(s)	318
BstAUI	TGTACA	1 cut(s)	211
BstC8I	GCNNGC	1 cut(s)	265
BstF5I	GGATG	5 cut(s)	24, 130, 301, 354, 358
BstFNI	CGCG	1 cut(s)	19
BstKTI	GATC	1 cut(s)	321
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	1 cut(s)	318
BstNSI	RCATGY	1 cut(s)	346
BstSLI	GKGCMC	1 cut(s)	371
BstUI	CGCG	1 cut(s)	19
BsuRI	GGCC	2 cut(s)	267, 287
BtsCI	GGATG	5 cut(s)	24, 130, 301, 354, 358
Cac8I	GCNNGC	1 cut(s)	265
Csp6I	GTAC	1 cut(s)	212
CviAII	CATG	5 cut(s)	98, 182, 215, 232, 343
CviJI	RGCY	6 cut(s)	151, 171, 198, 250, 267, 287
CviKI_1	RGCY	6 cut(s)	151, 171, 198, 250, 267, 287
CviQI	GTAC	1 cut(s)	212
DpnI	GATC	1 cut(s)	320
DpnII	GATC	1 cut(s)	318
EaeI	YGGCCR	2 cut(s)	265, 285
Eco31I	GGTCTC	1 cut(s)	232
EcoT22I	ATGCAT	1 cut(s)	358
FaeI	CATG	5 cut(s)	101, 185, 218, 235, 346
FatI	CATG	5 cut(s)	97, 181, 214, 231, 342
FauNDI	CATATG	1 cut(s)	82
Fnu4HI	GCNGC	1 cut(s)	268
FokI	GGATG	5 cut(s)	11, 117, 308, 361, 365
Fsp4HI	GCNGC	1 cut(s)	268
FspBI	CTAG	1 cut(s)	324
GluI	GCNGC	1 cut(s)	268
HaeIII	GGCC	2 cut(s)	267, 287
Hin1II	CATG	5 cut(s)	101, 185, 218, 235, 346
HindIII	AAGCTT	1 cut(s)	169
HinfI	GANTC	1 cut(s)	218
HphI	GGTGA	1 cut(s)	98
Hpy166II	GTNNAC	2 cut(s)	89, 369
Hpy188I	TCNGA	1 cut(s)	113
Hpy188III	TCNNGA	1 cut(s)	254
Hpy8I	GTNNAC	2 cut(s)	89, 369
Hpy99I	CGWCG	1 cut(s)	260
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	5 cut(s)	101, 299, 314, 356, 369
HpySE526I	ACGT	1 cut(s)	258
Hsp92II	CATG	5 cut(s)	101, 185, 218, 235, 346
Kzo9I	GATC	1 cut(s)	318
LpnPI	CCDG	3 cut(s)	137, 184, 249
LweI	GCATC	3 cut(s)	178, 286, 343
MaeI	CTAG	1 cut(s)	324
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	1 cut(s)	320
MboI	GATC	1 cut(s)	318
MboII	GAAGA	1 cut(s)	170
MhlI	GDGCHC	1 cut(s)	371
MlsI	TGGCCA	1 cut(s)	287
MluCI	AATT	3 cut(s)	202, 242, 300
MluNI	TGGCCA	1 cut(s)	287
MnlI	CCTC	4 cut(s)	26, 111, 343, 355
Mox20I	TGGCCA	1 cut(s)	287
Mph1103I	ATGCAT	1 cut(s)	358
MroXI	GAANNNNTTC	1 cut(s)	93
MscI	TGGCCA	1 cut(s)	287
MseI	TTAA	1 cut(s)	174
MslI	CAYNNNNRTG	2 cut(s)	186, 347
Msp20I	TGGCCA	1 cut(s)	287
Mva1269I	GAATGC	1 cut(s)	316
MvnI	CGCG	1 cut(s)	19
NdeI	CATATG	1 cut(s)	82
NdeII	GATC	1 cut(s)	318
NlaIII	CATG	5 cut(s)	101, 185, 218, 235, 346
NlaIV	GGNNCC	1 cut(s)	144
NsiI	ATGCAT	1 cut(s)	358
NspI	RCATGY	1 cut(s)	346
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PctI	GAATGC	1 cut(s)	316
PdmI	GAANNNNTTC	1 cut(s)	93
PfeI	GAWTC	1 cut(s)	218
PkrI	GCNGC	1 cut(s)	269
PspN4I	GGNNCC	1 cut(s)	144
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
RseI	CAYNNNNRTG	2 cut(s)	186, 347
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	1 cut(s)	268
Sau3AI	GATC	1 cut(s)	318
SduI	GDGCHC	1 cut(s)	371
SetI	ASST	6 cut(s)	70, 122, 153, 173, 200, 261
SfaNI	GCATC	3 cut(s)	178, 286, 343
SmiMI	CAYNNNNRTG	2 cut(s)	186, 347
SmlI	CTYRAG	1 cut(s)	166
SmoI	CTYRAG	1 cut(s)	166
Sse9I	AATT	3 cut(s)	202, 242, 300
SsiI	CCGC	1 cut(s)	268
SspI	AATATT	1 cut(s)	60
SspMI	CTAG	1 cut(s)	324
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	1 cut(s)	255
TasI	AATT	3 cut(s)	202, 242, 300
TatI	WGTACW	1 cut(s)	211
TauI	GCSGC	1 cut(s)	270
TfiI	GAWTC	1 cut(s)	218
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TspDTI	ATGAA	4 cut(s)	52, 86, 170, 210
VneI	GTGCAC	1 cut(s)	367
XapI	RAATTY	2 cut(s)	202, 242
XceI	RCATGY	1 cut(s)	346
XmnI	GAANNNNTTC	1 cut(s)	93
XspI	CTAG	1 cut(s)	324
Zsp2I	ATGCAT	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.