Rroxscaffold_2G00149990

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0019824
Physical Location & Seq
Forward (+)
87472116 .. 87474022
1907 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00149990.1

Sequence Viewer

Length: 690 bp
ATGCTTTCTGCCTATTCAAAATCTGGGACTGTTGAGGAATTGGGGGCAATCTTTGATCGTTTGCGTTCTCGAGATTTGGTCTTTTACAATACGGTGATTGCGGGTACGGCTGCAAATGGGTGTTGGAGCAAGGCGTTTGAAGCTTTTGTGAAAATGCAAGAAGGGCTTTTGAGCCCTCACTCTTCAGAGAGTATACGTTCGTTAGTTACGTTACAAGTTTGCCCCAAGTTATTGATGGATTCTAGGCTGGGGAAGAAAATTCATGGCAGAGTTGTTGTTGAAGCAAGGAACACATTTGATGGAATTAGAGGGAAGGATAAGACTTGTTGGACAACAATGATAGTAGGTTATGCACAGAATGGTCGATCATCATCGCTGTATCATGGCCAGGTTGTTCATGGAAAGGCAGTTCATATGGGAATTGATGATAATTCGCTCATGTCTACTGCTCTCTTTGACATCTTCAGTGGTGGATGCAGGATTCGAAAATGGGCCACTACATCTTGTTGCATAGCCTGCCCTATGGCTGCTGCTTCGATTTGTACCGATCCGGTCGCAACCTTAGAGGCCAAAACCGAACCCAAGGTTTGCTCCAAATCATGCTCCGTCTCCGGAGCTATGTTCTCACCATTACCAATAGCCGGATTCGATATAGGAGGCGACCGGAAGGAGAAGCAAATGGGGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

229

Amino Acids

24.68

Weight (kDa)

8.8

Isoelectric Point (pI)

43.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019824)

Species Orthologous Gene IDs
pyrus_communis pycom08g18780
rosa_chinensis RchiOBHm_Chr1g0379121
rosa_laevigata RLG00000016230
rosa_multiflora Rmu_sc0002407.1_g000008
rosa_roxburghii Rroxscaffold_2G00149990
rosa_samantha Rh2AG063300 Rh2DG062800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 193, 443
AccIII TCCGGA 1 cut(s) 611
AciI CCGC 1 cut(s) 101
AclWI GGATC 1 cut(s) 542
AcoI YGGCCR 1 cut(s) 385
AcsI RAATTY 1 cut(s) 258
AcuI CTGAAG 2 cut(s) 168, 448
AfaI GTAC 2 cut(s) 106, 544
AfiI CCNNNNNNNGG 1 cut(s) 641
AgsI TTSAA 3 cut(s) 18, 140, 281
AjnI CCWGG 1 cut(s) 387
AloI GAACNNNNNNTCC 2 cut(s) 393, 425
AluBI AGCT 2 cut(s) 143, 617
AluI AGCT 2 cut(s) 143, 617
Alw26I GTCTC 1 cut(s) 613
AlwI GGATC 1 cut(s) 542
Ama87I CYCGRG 1 cut(s) 69
Aor13HI TCCGGA 1 cut(s) 611
AoxI GGCC 3 cut(s) 385, 492, 567
ApeKI GCWGC 3 cut(s) 110, 527, 530
ApoI RAATTY 1 cut(s) 258
AspS9I GGNCC 1 cut(s) 492
AsuHPI GGTGA 2 cut(s) 106, 618
AsuII TTCGAA 1 cut(s) 484
AvaI CYCGRG 1 cut(s) 69
BalI TGGCCA 1 cut(s) 387
BanII GRGCYC 1 cut(s) 176
BbvI GCAGC 3 cut(s) 97, 514, 517
BccI CCATC 2 cut(s) 229, 293
BceAI ACGGC 1 cut(s) 123
BciT130I CCWGG 1 cut(s) 389
BcoDI GTCTC 1 cut(s) 613
BfaI CTAG 1 cut(s) 243
BisI GCNGC 3 cut(s) 111, 528, 531
BlsI GCNGC 3 cut(s) 112, 529, 532
Bme1390I CCNGG 1 cut(s) 389
BmeT110I CYCGRG 1 cut(s) 69
BmgT120I GGNCC 1 cut(s) 492
BmrFI CCNGG 1 cut(s) 389
BmsI GCATC 1 cut(s) 464
Bpu14I TTCGAA 1 cut(s) 484
BsaBI GATNNNNATC 1 cut(s) 370
BsaJI CCNNGG 1 cut(s) 582
BsaWI WCCGGW 3 cut(s) 550, 611, 663
Bsc4I CCNNNNNNNGG 1 cut(s) 641
Bse8I GATNNNNATC 1 cut(s) 370
BseAI TCCGGA 1 cut(s) 611
BseBI CCWGG 1 cut(s) 389
BseDI CCNNGG 1 cut(s) 582
BseGI GGATG 1 cut(s) 479
BseJI GATNNNNATC 1 cut(s) 370
BseLI CCNNNNNNNGG 1 cut(s) 641
BseXI GCAGC 3 cut(s) 97, 514, 517
BseYI CCCAGC 1 cut(s) 247
Bsh1285I CGRYCG 2 cut(s) 555, 664
BshFI GGCC 3 cut(s) 387, 494, 569
BsiEI CGRYCG 2 cut(s) 555, 664
BsiHKCI CYCGRG 1 cut(s) 69
BsiSI CCGG 4 cut(s) 551, 612, 642, 664
BslFI GGGAC 1 cut(s) 40
BslI CCNNNNNNNGG 1 cut(s) 641
BsmAI GTCTC 1 cut(s) 613
BsmBI CGTCTC 1 cut(s) 613
BsmFI GGGAC 1 cut(s) 40
BsnI GGCC 3 cut(s) 387, 494, 569
BsoBI CYCGRG 1 cut(s) 69
Bsp119I TTCGAA 1 cut(s) 484
Bsp1286I GDGCHC 1 cut(s) 176
Bsp13I TCCGGA 1 cut(s) 611
Bsp143I GATC 3 cut(s) 55, 365, 547
BspACI CCGC 1 cut(s) 101
BspANI GGCC 3 cut(s) 387, 494, 569
BspEI TCCGGA 1 cut(s) 611
BspPI GGATC 1 cut(s) 542
BspT104I TTCGAA 1 cut(s) 484
BssECI CCNNGG 1 cut(s) 582
BssMI GATC 3 cut(s) 55, 365, 547
BssNAI GTATAC 1 cut(s) 194
BssT1I CCWWGG 1 cut(s) 582
Bst1107I GTATAC 1 cut(s) 194
Bst2UI CCWGG 1 cut(s) 389
Bst4CI ACNGT 2 cut(s) 31, 94
Bst6I CTCTTC 1 cut(s) 187
BstAPI GCANNNNNTGC 1 cut(s) 516
BstBI TTCGAA 1 cut(s) 484
BstC8I GCNNGC 1 cut(s) 517
BstDEI CTNAG 1 cut(s) 562
BstF5I GGATG 1 cut(s) 479
BstKTI GATC 3 cut(s) 58, 368, 550
BstMAI GTCTC 1 cut(s) 613
BstMBI GATC 3 cut(s) 55, 365, 547
BstMCI CGRYCG 2 cut(s) 555, 664
BstMWI GCNNNNNNNGC 4 cut(s) 107, 140, 163, 516
BstNI CCWGG 1 cut(s) 389
BstSCI CCNGG 1 cut(s) 387
BstV1I GCAGC 3 cut(s) 97, 514, 517
BstZ17I GTATAC 1 cut(s) 194
BsuRI GGCC 3 cut(s) 387, 494, 569
BtgZI GCGATG 1 cut(s) 357
BtsCI GGATG 1 cut(s) 479
BtsIMutI CAGTG 1 cut(s) 472
Cac8I GCNNGC 1 cut(s) 517
Cfr13I GGNCC 1 cut(s) 492
Csp6I GTAC 2 cut(s) 105, 543
CviAII CATG 5 cut(s) 263, 383, 398, 439, 600
CviQI GTAC 2 cut(s) 105, 543
DdeI CTNAG 1 cut(s) 562
DpnI GATC 3 cut(s) 57, 367, 549
DpnII GATC 3 cut(s) 55, 365, 547
EaeI YGGCCR 1 cut(s) 385
Eam1104I CTCTTC 1 cut(s) 187
EarI CTCTTC 1 cut(s) 187
Eco130I CCWWGG 1 cut(s) 582
Eco24I GRGCYC 1 cut(s) 176
Eco57I CTGAAG 2 cut(s) 168, 448
Eco88I CYCGRG 1 cut(s) 69
EcoRII CCWGG 1 cut(s) 387
EcoT14I CCWWGG 1 cut(s) 582
EcoT38I GRGCYC 1 cut(s) 176
ErhI CCWWGG 1 cut(s) 582
Esp3I CGTCTC 1 cut(s) 613
FaeI CATG 5 cut(s) 266, 386, 401, 442, 603
FalI AAGNNNNNCTT 2 cut(s) 150, 182
FaqI GGGAC 1 cut(s) 40
FatI CATG 5 cut(s) 262, 382, 397, 438, 599
FauI CCCGC 1 cut(s) 94
FauNDI CATATG 1 cut(s) 414
FblI GTMKAC 2 cut(s) 193, 443
Fnu4HI GCNGC 3 cut(s) 111, 528, 531
FokI GGATG 1 cut(s) 486
FriOI GRGCYC 1 cut(s) 176
Fsp4HI GCNGC 3 cut(s) 111, 528, 531
FspBI CTAG 1 cut(s) 243
GluI GCNGC 3 cut(s) 111, 528, 531
GsaI CCCAGC 1 cut(s) 251
HaeIII GGCC 3 cut(s) 387, 494, 569
HapII CCGG 4 cut(s) 551, 612, 642, 664
Hin1II CATG 5 cut(s) 266, 386, 401, 442, 603
HindIII AAGCTT 1 cut(s) 141
HinfI GANTC 3 cut(s) 239, 481, 645
HpaII CCGG 4 cut(s) 551, 612, 642, 664
HphI GGTGA 2 cut(s) 106, 618
Hpy166II GTNNAC 2 cut(s) 194, 444
Hpy188I TCNGA 1 cut(s) 187
Hpy188III TCNNGA 3 cut(s) 69, 71, 612
Hpy8I GTNNAC 2 cut(s) 194, 444
HpyAV CCTTC 3 cut(s) 155, 307, 661
HpyCH4III ACNGT 2 cut(s) 31, 94
HpyCH4IV ACGT 2 cut(s) 196, 209
HpyCH4V TGCA 5 cut(s) 113, 157, 353, 477, 510
HpyF10VI GCNNNNNNNGC 4 cut(s) 107, 140, 163, 516
HpyF3I CTNAG 1 cut(s) 562
HpySE526I ACGT 2 cut(s) 196, 209
Hsp92II CATG 5 cut(s) 266, 386, 401, 442, 603
Kpn2I TCCGGA 1 cut(s) 611
Kzo9I GATC 3 cut(s) 55, 365, 547
LmnI GCTCC 4 cut(s) 126, 596, 608, 614
Lsp1109I GCAGC 3 cut(s) 97, 514, 517
LweI GCATC 1 cut(s) 464
MaeI CTAG 1 cut(s) 243
MaeII ACGT 2 cut(s) 196, 209
MaeIII GTNAC 2 cut(s) 205, 210
MalI GATC 3 cut(s) 57, 367, 549
MboI GATC 3 cut(s) 55, 365, 547
MboII GAAGA 3 cut(s) 174, 265, 454
MhlI GDGCHC 1 cut(s) 176
MlsI TGGCCA 1 cut(s) 387
MluCI AATT 5 cut(s) 38, 258, 303, 420, 430
MluNI TGGCCA 1 cut(s) 387
MmeI TCCRAC 2 cut(s) 104, 308
MnlI CCTC 5 cut(s) 28, 186, 302, 559, 650
Mox20I TGGCCA 1 cut(s) 387
MroI TCCGGA 1 cut(s) 611
MscI TGGCCA 1 cut(s) 387
Msp20I TGGCCA 1 cut(s) 387
MspI CCGG 4 cut(s) 551, 612, 642, 664
MspR9I CCNGG 1 cut(s) 389
MvaI CCWGG 1 cut(s) 389
MwoI GCNNNNNNNGC 4 cut(s) 107, 140, 163, 516
NdeI CATATG 1 cut(s) 414
NdeII GATC 3 cut(s) 55, 365, 547
NlaIII CATG 5 cut(s) 266, 386, 401, 442, 603
NspV TTCGAA 1 cut(s) 484
PaeR7I CTCGAG 1 cut(s) 69
PcsI WCGNNNNNNNCGW 1 cut(s) 206
PfeI GAWTC 3 cut(s) 239, 481, 645
PkrI GCNGC 3 cut(s) 112, 529, 532
Psp6I CCWGG 1 cut(s) 387
PspFI CCCAGC 1 cut(s) 247
PspGI CCWGG 1 cut(s) 387
PspPI GGNCC 1 cut(s) 492
RsaI GTAC 2 cut(s) 106, 544
RsaNI GTAC 2 cut(s) 105, 543
SatI GCNGC 3 cut(s) 111, 528, 531
Sau3AI GATC 3 cut(s) 55, 365, 547
Sau96I GGNCC 1 cut(s) 492
ScrFI CCNGG 1 cut(s) 389
SduI GDGCHC 1 cut(s) 176
SetI ASST 8 cut(s) 145, 199, 212, 349, 393, 563, 588, 619
SfaNI GCATC 1 cut(s) 464
Sfr274I CTCGAG 1 cut(s) 69
SfuI TTCGAA 1 cut(s) 484
SlaI CTCGAG 1 cut(s) 69
SmlI CTYRAG 1 cut(s) 69
SmoI CTYRAG 1 cut(s) 69
Sse9I AATT 5 cut(s) 38, 258, 303, 420, 430
SsiI CCGC 1 cut(s) 101
SspMI CTAG 1 cut(s) 243
StyD4I CCNGG 1 cut(s) 387
StyI CCWWGG 1 cut(s) 582
TaaI ACNGT 2 cut(s) 31, 94
TaiI ACGT 2 cut(s) 199, 212
TaqI TCGA 5 cut(s) 70, 364, 484, 536, 648
TasI AATT 5 cut(s) 38, 258, 303, 420, 430
TfiI GAWTC 3 cut(s) 239, 481, 645
TscAI CASTG 1 cut(s) 472
TseI GCWGC 3 cut(s) 110, 527, 530
TspDTI ATGAA 3 cut(s) 251, 386, 401
TspGWI ACGGA 1 cut(s) 595
TspRI CASTG 1 cut(s) 472
XapI RAATTY 1 cut(s) 258
XcmI CCANNNNNNNNNTGG 2 cut(s) 232, 395
XhoI CTCGAG 1 cut(s) 69
XmiI GTMKAC 2 cut(s) 193, 443
XspI CTAG 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.