Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom08g18780 |
| rosa_chinensis | RchiOBHm_Chr1g0379121 |
| rosa_laevigata | RLG00000016230 |
| rosa_multiflora | Rmu_sc0002407.1_g000008 |
| rosa_roxburghii | Rroxscaffold_2G00149990 |
| rosa_samantha | Rh2AG063300 Rh2DG062800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 3 cut(s) | 193, 443, 464 |
| AciI | CCGC | 1 cut(s) | 485 |
| AcoI | YGGCCR | 1 cut(s) | 385 |
| AcsI | RAATTY | 1 cut(s) | 258 |
| AfaI | GTAC | 1 cut(s) | 106 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 521 |
| AflIII | ACRYGT | 1 cut(s) | 459 |
| AgeI | ACCGGT | 1 cut(s) | 555 |
| AgsI | TTSAA | 4 cut(s) | 18, 140, 281, 505 |
| AjnI | CCWGG | 1 cut(s) | 387 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 393, 425 |
| AluBI | AGCT | 2 cut(s) | 143, 546 |
| AluI | AGCT | 2 cut(s) | 143, 546 |
| Alw21I | GWGCWC | 1 cut(s) | 566 |
| Alw44I | GTGCAC | 1 cut(s) | 562 |
| Ama87I | CYCGRG | 1 cut(s) | 69 |
| AoxI | GGCC | 2 cut(s) | 385, 586 |
| ApaLI | GTGCAC | 1 cut(s) | 562 |
| ApeKI | GCWGC | 2 cut(s) | 110, 482 |
| ApoI | RAATTY | 1 cut(s) | 258 |
| AsiGI | ACCGGT | 1 cut(s) | 555 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 64 |
| AsuHPI | GGTGA | 1 cut(s) | 106 |
| AsuNHI | GCTAGC | 1 cut(s) | 542 |
| AvaI | CYCGRG | 1 cut(s) | 69 |
| BaeGI | GKGCMC | 1 cut(s) | 566 |
| BalI | TGGCCA | 1 cut(s) | 387 |
| BauI | CACGAG | 1 cut(s) | 437 |
| Bbv12I | GWGCWC | 1 cut(s) | 566 |
| BbvI | GCAGC | 2 cut(s) | 97, 469 |
| BccI | CCATC | 2 cut(s) | 229, 490 |
| BceAI | ACGGC | 1 cut(s) | 123 |
| BciT130I | CCWGG | 1 cut(s) | 389 |
| BfaI | CTAG | 3 cut(s) | 243, 543, 582 |
| BglII | AGATCT | 1 cut(s) | 578 |
| BisI | GCNGC | 2 cut(s) | 111, 483 |
| BlsI | GCNGC | 2 cut(s) | 112, 484 |
| Bme1390I | CCNGG | 1 cut(s) | 389 |
| BmeT110I | CYCGRG | 1 cut(s) | 69 |
| BmrFI | CCNGG | 1 cut(s) | 389 |
| BmsI | GCATC | 2 cut(s) | 478, 501 |
| BmtI | GCTAGC | 1 cut(s) | 546 |
| BsaBI | GATNNNNATC | 1 cut(s) | 370 |
| BsaJI | CCNNGG | 1 cut(s) | 589 |
| BsaWI | WCCGGW | 1 cut(s) | 555 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 521 |
| Bse118I | RCCGGY | 1 cut(s) | 555 |
| Bse8I | GATNNNNATC | 1 cut(s) | 370 |
| BseBI | CCWGG | 1 cut(s) | 389 |
| BseDI | CCNNGG | 1 cut(s) | 589 |
| BseGI | GGATG | 2 cut(s) | 493, 501 |
| BseJI | GATNNNNATC | 1 cut(s) | 370 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 521 |
| BseMII | CTCAG | 2 cut(s) | 198, 533 |
| BseRI | GAGGAG | 1 cut(s) | 172 |
| BseSI | GKGCMC | 1 cut(s) | 566 |
| BseXI | GCAGC | 2 cut(s) | 97, 469 |
| BseYI | CCCAGC | 1 cut(s) | 247 |
| BshFI | GGCC | 2 cut(s) | 387, 588 |
| BshTI | ACCGGT | 1 cut(s) | 555 |
| BsiHKAI | GWGCWC | 1 cut(s) | 566 |
| BsiHKCI | CYCGRG | 1 cut(s) | 69 |
| BsiSI | CCGG | 1 cut(s) | 556 |
| BslFI | GGGAC | 1 cut(s) | 40 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 521 |
| BsmFI | GGGAC | 1 cut(s) | 40 |
| BsmI | GAATGC | 2 cut(s) | 66, 544 |
| BsnI | GGCC | 2 cut(s) | 387, 588 |
| BsoBI | CYCGRG | 1 cut(s) | 69 |
| Bsp1286I | GDGCHC | 1 cut(s) | 566 |
| Bsp143I | GATC | 3 cut(s) | 55, 365, 578 |
| BspACI | CCGC | 1 cut(s) | 485 |
| BspANI | GGCC | 2 cut(s) | 387, 588 |
| BspCNI | CTCAG | 2 cut(s) | 197, 532 |
| BspOI | GCTAGC | 1 cut(s) | 546 |
| BsrFI | RCCGGY | 1 cut(s) | 555 |
| BssAI | RCCGGY | 1 cut(s) | 555 |
| BssECI | CCNNGG | 1 cut(s) | 589 |
| BssMI | GATC | 3 cut(s) | 55, 365, 578 |
| BssNAI | GTATAC | 2 cut(s) | 194, 465 |
| BssSI | CACGAG | 1 cut(s) | 437 |
| BssT1I | CCWWGG | 1 cut(s) | 589 |
| Bst1107I | GTATAC | 2 cut(s) | 194, 465 |
| Bst2BI | CACGAG | 1 cut(s) | 437 |
| Bst2UI | CCWGG | 1 cut(s) | 389 |
| Bst4CI | ACNGT | 2 cut(s) | 31, 94 |
| BstC8I | GCNNGC | 1 cut(s) | 544 |
| BstDEI | CTNAG | 2 cut(s) | 184, 519 |
| BstF5I | GGATG | 2 cut(s) | 493, 501 |
| BstKTI | GATC | 3 cut(s) | 58, 368, 581 |
| BstMBI | GATC | 3 cut(s) | 55, 365, 578 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 140, 163, 488 |
| BstNI | CCWGG | 1 cut(s) | 389 |
| BstNSI | RCATGY | 1 cut(s) | 463 |
| BstSCI | CCNGG | 1 cut(s) | 387 |
| BstSLI | GKGCMC | 1 cut(s) | 566 |
| BstV1I | GCAGC | 2 cut(s) | 97, 469 |
| BstX2I | RGATCY | 1 cut(s) | 578 |
| BstYI | RGATCY | 1 cut(s) | 578 |
| BstZ17I | GTATAC | 2 cut(s) | 194, 465 |
| BsuRI | GGCC | 2 cut(s) | 387, 588 |
| BtgZI | GCGATG | 1 cut(s) | 357 |
| BtsCI | GGATG | 2 cut(s) | 493, 501 |
| Cac8I | GCNNGC | 1 cut(s) | 544 |
| Cfr10I | RCCGGY | 1 cut(s) | 555 |
| Csp6I | GTAC | 1 cut(s) | 105 |
| CspAI | ACCGGT | 1 cut(s) | 555 |
| CviAII | CATG | 4 cut(s) | 263, 383, 398, 460 |
| CviJI | RGCY | 8 cut(s) | 110, 143, 166, 174, 247, 387, 546, 588 |
| CviKI_1 | RGCY | 8 cut(s) | 110, 143, 166, 174, 247, 387, 546, 588 |
| CviQI | GTAC | 1 cut(s) | 105 |
| DdeI | CTNAG | 2 cut(s) | 184, 519 |
| DpnI | GATC | 3 cut(s) | 57, 367, 580 |
| DpnII | GATC | 3 cut(s) | 55, 365, 578 |
| EaeI | YGGCCR | 1 cut(s) | 385 |
| Eco130I | CCWWGG | 1 cut(s) | 589 |
| Eco147I | AGGCCT | 1 cut(s) | 588 |
| Eco88I | CYCGRG | 1 cut(s) | 69 |
| EcoRII | CCWGG | 1 cut(s) | 387 |
| EcoT14I | CCWWGG | 1 cut(s) | 589 |
| ErhI | CCWWGG | 1 cut(s) | 589 |
| FaeI | CATG | 4 cut(s) | 266, 386, 401, 463 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 150, 182 |
| FaqI | GGGAC | 1 cut(s) | 40 |
| FatI | CATG | 4 cut(s) | 262, 382, 397, 459 |
| FblI | GTMKAC | 3 cut(s) | 193, 443, 464 |
| Fnu4HI | GCNGC | 2 cut(s) | 111, 483 |
| FokI | GGATG | 2 cut(s) | 500, 508 |
| Fsp4HI | GCNGC | 2 cut(s) | 111, 483 |
| FspBI | CTAG | 3 cut(s) | 243, 543, 582 |
| GluI | GCNGC | 2 cut(s) | 111, 483 |
| GsaI | CCCAGC | 1 cut(s) | 251 |
| HaeIII | GGCC | 2 cut(s) | 387, 588 |
| HapII | CCGG | 1 cut(s) | 556 |
| Hin1II | CATG | 4 cut(s) | 266, 386, 401, 463 |
| HindIII | AAGCTT | 1 cut(s) | 141 |
| HinfI | GANTC | 1 cut(s) | 239 |
| HpaII | CCGG | 1 cut(s) | 556 |
| HphI | GGTGA | 1 cut(s) | 106 |
| Hpy166II | GTNNAC | 5 cut(s) | 194, 444, 465, 476, 564 |
| Hpy188I | TCNGA | 1 cut(s) | 187 |
| Hpy188III | TCNNGA | 2 cut(s) | 69, 582 |
| Hpy8I | GTNNAC | 5 cut(s) | 194, 444, 465, 476, 564 |
| HpyAV | CCTTC | 3 cut(s) | 155, 185, 307 |
| HpyCH4III | ACNGT | 2 cut(s) | 31, 94 |
| HpyCH4IV | ACGT | 1 cut(s) | 196 |
| HpyCH4V | TGCA | 4 cut(s) | 113, 157, 353, 564 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 140, 163, 488 |
| HpyF3I | CTNAG | 2 cut(s) | 184, 519 |
| HpySE526I | ACGT | 1 cut(s) | 196 |
| Hsp92II | CATG | 4 cut(s) | 266, 386, 401, 463 |
| Kzo9I | GATC | 3 cut(s) | 55, 365, 578 |
| LmnI | GCTCC | 1 cut(s) | 126 |
| LpnPI | CCDG | 6 cut(s) | 9, 233, 374, 401, 506, 569 |
| Lsp1109I | GCAGC | 2 cut(s) | 97, 469 |
| LweI | GCATC | 2 cut(s) | 478, 501 |
| MaeI | CTAG | 3 cut(s) | 243, 543, 582 |
| MaeII | ACGT | 1 cut(s) | 196 |
| MaeIII | GTNAC | 1 cut(s) | 210 |
| MalI | GATC | 3 cut(s) | 57, 367, 580 |
| MboI | GATC | 3 cut(s) | 55, 365, 578 |
| MboII | GAAGA | 1 cut(s) | 265 |
| MflI | RGATCY | 1 cut(s) | 578 |
| MhlI | GDGCHC | 1 cut(s) | 566 |
| MlsI | TGGCCA | 1 cut(s) | 387 |
| MluCI | AATT | 5 cut(s) | 38, 258, 303, 420, 430 |
| MluNI | TGGCCA | 1 cut(s) | 387 |
| MmeI | TCCRAC | 2 cut(s) | 104, 308 |
| MnlI | CCTC | 5 cut(s) | 28, 193, 302, 526, 578 |
| Mox20I | TGGCCA | 1 cut(s) | 387 |
| MroXI | GAANNNNTTC | 1 cut(s) | 64 |
| MscI | TGGCCA | 1 cut(s) | 387 |
| Msp20I | TGGCCA | 1 cut(s) | 387 |
| MspI | CCGG | 1 cut(s) | 556 |
| MspR9I | CCNGG | 1 cut(s) | 389 |
| Mva1269I | GAATGC | 2 cut(s) | 66, 544 |
| MvaI | CCWGG | 1 cut(s) | 389 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 140, 163, 488 |
| NdeII | GATC | 3 cut(s) | 55, 365, 578 |
| NheI | GCTAGC | 1 cut(s) | 542 |
| NlaIII | CATG | 4 cut(s) | 266, 386, 401, 463 |
| NspI | RCATGY | 1 cut(s) | 463 |
| PaeR7I | CTCGAG | 1 cut(s) | 69 |
| PceI | AGGCCT | 1 cut(s) | 588 |
| PciI | ACATGT | 1 cut(s) | 459 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 206 |
| PctI | GAATGC | 2 cut(s) | 66, 544 |
| PdmI | GAANNNNTTC | 1 cut(s) | 64 |
| PfeI | GAWTC | 1 cut(s) | 239 |
| PinAI | ACCGGT | 1 cut(s) | 555 |
| PkrI | GCNGC | 2 cut(s) | 112, 484 |
| PscI | ACATGT | 1 cut(s) | 459 |
| Psp6I | CCWGG | 1 cut(s) | 387 |
| PspFI | CCCAGC | 1 cut(s) | 247 |
| PspGI | CCWGG | 1 cut(s) | 387 |
| PsuI | RGATCY | 1 cut(s) | 578 |
| RsaI | GTAC | 1 cut(s) | 106 |
| RsaNI | GTAC | 1 cut(s) | 105 |
| SatI | GCNGC | 2 cut(s) | 111, 483 |
| Sau3AI | GATC | 3 cut(s) | 55, 365, 578 |
| ScrFI | CCNGG | 1 cut(s) | 389 |
| SduI | GDGCHC | 1 cut(s) | 566 |
| SetI | ASST | 5 cut(s) | 145, 199, 349, 393, 548 |
| SfaNI | GCATC | 2 cut(s) | 478, 501 |
| Sfr274I | CTCGAG | 1 cut(s) | 69 |
| SlaI | CTCGAG | 1 cut(s) | 69 |
| SmlI | CTYRAG | 1 cut(s) | 69 |
| SmoI | CTYRAG | 1 cut(s) | 69 |
| Sse9I | AATT | 5 cut(s) | 38, 258, 303, 420, 430 |
| SseBI | AGGCCT | 1 cut(s) | 588 |
| SsiI | CCGC | 1 cut(s) | 485 |
| SspMI | CTAG | 3 cut(s) | 243, 543, 582 |
| StuI | AGGCCT | 1 cut(s) | 588 |
| StyD4I | CCNGG | 1 cut(s) | 387 |
| StyI | CCWWGG | 1 cut(s) | 589 |
| TaaI | ACNGT | 2 cut(s) | 31, 94 |
| TaiI | ACGT | 1 cut(s) | 199 |
| TaqI | TCGA | 3 cut(s) | 58, 70, 364 |
| TasI | AATT | 5 cut(s) | 38, 258, 303, 420, 430 |
| TfiI | GAWTC | 1 cut(s) | 239 |
| TseI | GCWGC | 2 cut(s) | 110, 482 |
| TspDTI | ATGAA | 4 cut(s) | 251, 315, 386, 401 |
| VneI | GTGCAC | 1 cut(s) | 562 |
| XapI | RAATTY | 1 cut(s) | 258 |
| XbaI | TCTAGA | 1 cut(s) | 581 |
| XceI | RCATGY | 1 cut(s) | 463 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 232, 395 |
| XhoI | CTCGAG | 1 cut(s) | 69 |
| XmiI | GTMKAC | 3 cut(s) | 193, 443, 464 |
| XmnI | GAANNNNTTC | 1 cut(s) | 64 |
| XspI | CTAG | 3 cut(s) | 243, 543, 582 |