Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom08g18780 |
| rosa_chinensis | RchiOBHm_Chr1g0379121 |
| rosa_laevigata | RLG00000016230 |
| rosa_multiflora | Rmu_sc0002407.1_g000008 |
| rosa_roxburghii | Rroxscaffold_2G00149990 |
| rosa_samantha | Rh2AG063300 Rh2DG062800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 226 |
| AcsI | RAATTY | 3 cut(s) | 22, 186, 291 |
| AfaI | GTAC | 1 cut(s) | 139 |
| AgsI | TTSAA | 3 cut(s) | 51, 173, 191 |
| AluBI | AGCT | 1 cut(s) | 176 |
| AluI | AGCT | 1 cut(s) | 176 |
| Ama87I | CYCGRG | 1 cut(s) | 102 |
| ApeKI | GCWGC | 1 cut(s) | 143 |
| ApoI | RAATTY | 3 cut(s) | 22, 186, 291 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 97 |
| AsuHPI | GGTGA | 1 cut(s) | 139 |
| AvaI | CYCGRG | 1 cut(s) | 102 |
| BbvI | GCAGC | 1 cut(s) | 130 |
| BccI | CCATC | 1 cut(s) | 262 |
| BceAI | ACGGC | 1 cut(s) | 156 |
| BfaI | CTAG | 1 cut(s) | 276 |
| BisI | GCNGC | 1 cut(s) | 144 |
| BlsI | GCNGC | 1 cut(s) | 145 |
| BmeT110I | CYCGRG | 1 cut(s) | 102 |
| BseMII | CTCAG | 1 cut(s) | 231 |
| BseRI | GAGGAG | 2 cut(s) | 83, 205 |
| BseXI | GCAGC | 1 cut(s) | 130 |
| BseYI | CCCAGC | 1 cut(s) | 280 |
| BsiHKCI | CYCGRG | 1 cut(s) | 102 |
| BslFI | GGGAC | 1 cut(s) | 73 |
| BsmFI | GGGAC | 1 cut(s) | 73 |
| BsmI | GAATGC | 1 cut(s) | 99 |
| BsoBI | CYCGRG | 1 cut(s) | 102 |
| Bsp143I | GATC | 1 cut(s) | 88 |
| BspCNI | CTCAG | 1 cut(s) | 230 |
| BssMI | GATC | 1 cut(s) | 88 |
| BssNAI | GTATAC | 1 cut(s) | 227 |
| Bst1107I | GTATAC | 1 cut(s) | 227 |
| Bst4CI | ACNGT | 2 cut(s) | 64, 127 |
| BstDEI | CTNAG | 1 cut(s) | 217 |
| BstKTI | GATC | 1 cut(s) | 91 |
| BstMBI | GATC | 1 cut(s) | 88 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 173 |
| BstV1I | GCAGC | 1 cut(s) | 130 |
| BstZ17I | GTATAC | 1 cut(s) | 227 |
| Csp6I | GTAC | 1 cut(s) | 138 |
| CviAII | CATG | 2 cut(s) | 34, 296 |
| CviJI | RGCY | 5 cut(s) | 143, 176, 199, 207, 280 |
| CviKI_1 | RGCY | 5 cut(s) | 143, 176, 199, 207, 280 |
| CviQI | GTAC | 1 cut(s) | 138 |
| DdeI | CTNAG | 1 cut(s) | 217 |
| DpnI | GATC | 1 cut(s) | 90 |
| DpnII | GATC | 1 cut(s) | 88 |
| Eco88I | CYCGRG | 1 cut(s) | 102 |
| FaeI | CATG | 2 cut(s) | 37, 299 |
| FaiI | YATR | 3 cut(s) | 35, 227, 297 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 183, 215 |
| FaqI | GGGAC | 1 cut(s) | 73 |
| FatI | CATG | 2 cut(s) | 33, 295 |
| FblI | GTMKAC | 1 cut(s) | 226 |
| Fnu4HI | GCNGC | 1 cut(s) | 144 |
| Fsp4HI | GCNGC | 1 cut(s) | 144 |
| FspBI | CTAG | 1 cut(s) | 276 |
| GluI | GCNGC | 1 cut(s) | 144 |
| GsaI | CCCAGC | 1 cut(s) | 284 |
| Hin1II | CATG | 2 cut(s) | 37, 299 |
| HindIII | AAGCTT | 1 cut(s) | 174 |
| HinfI | GANTC | 1 cut(s) | 272 |
| HphI | GGTGA | 1 cut(s) | 139 |
| Hpy166II | GTNNAC | 1 cut(s) | 227 |
| Hpy188I | TCNGA | 2 cut(s) | 220, 320 |
| Hpy188III | TCNNGA | 3 cut(s) | 102, 104, 191 |
| Hpy8I | GTNNAC | 1 cut(s) | 227 |
| HpyAV | CCTTC | 2 cut(s) | 188, 218 |
| HpyCH4III | ACNGT | 2 cut(s) | 64, 127 |
| HpyCH4IV | ACGT | 2 cut(s) | 229, 242 |
| HpyCH4V | TGCA | 1 cut(s) | 146 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 173 |
| HpyF3I | CTNAG | 1 cut(s) | 217 |
| HpySE526I | ACGT | 2 cut(s) | 229, 242 |
| Hsp92II | CATG | 2 cut(s) | 37, 299 |
| Kzo9I | GATC | 1 cut(s) | 88 |
| LmnI | GCTCC | 1 cut(s) | 159 |
| LpnPI | CCDG | 2 cut(s) | 42, 266 |
| Lsp1109I | GCAGC | 1 cut(s) | 130 |
| MaeI | CTAG | 1 cut(s) | 276 |
| MaeII | ACGT | 2 cut(s) | 229, 242 |
| MaeIII | GTNAC | 2 cut(s) | 238, 243 |
| MalI | GATC | 1 cut(s) | 90 |
| MboI | GATC | 1 cut(s) | 88 |
| MboII | GAAGA | 1 cut(s) | 298 |
| MluCI | AATT | 4 cut(s) | 22, 186, 291, 325 |
| MmeI | TCCRAC | 1 cut(s) | 137 |
| MnlI | CCTC | 3 cut(s) | 61, 223, 226 |
| MroXI | GAANNNNTTC | 1 cut(s) | 97 |
| MseI | TTAA | 1 cut(s) | 328 |
| Mva1269I | GAATGC | 1 cut(s) | 99 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 173 |
| NdeII | GATC | 1 cut(s) | 88 |
| NlaIII | CATG | 2 cut(s) | 37, 299 |
| PaeR7I | CTCGAG | 1 cut(s) | 102 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 239 |
| PctI | GAATGC | 1 cut(s) | 99 |
| PdmI | GAANNNNTTC | 1 cut(s) | 97 |
| PfeI | GAWTC | 1 cut(s) | 272 |
| PkrI | GCNGC | 1 cut(s) | 145 |
| PspFI | CCCAGC | 1 cut(s) | 280 |
| RsaI | GTAC | 1 cut(s) | 139 |
| RsaNI | GTAC | 1 cut(s) | 138 |
| SaqAI | TTAA | 1 cut(s) | 328 |
| SatI | GCNGC | 1 cut(s) | 144 |
| Sau3AI | GATC | 1 cut(s) | 88 |
| SetI | ASST | 3 cut(s) | 178, 232, 245 |
| Sfr274I | CTCGAG | 1 cut(s) | 102 |
| SlaI | CTCGAG | 1 cut(s) | 102 |
| SmlI | CTYRAG | 1 cut(s) | 102 |
| SmoI | CTYRAG | 1 cut(s) | 102 |
| Sse9I | AATT | 4 cut(s) | 22, 186, 291, 325 |
| SspMI | CTAG | 1 cut(s) | 276 |
| TaaI | ACNGT | 2 cut(s) | 64, 127 |
| TaiI | ACGT | 2 cut(s) | 232, 245 |
| TaqI | TCGA | 2 cut(s) | 91, 103 |
| TasI | AATT | 4 cut(s) | 22, 186, 291, 325 |
| TfiI | GAWTC | 1 cut(s) | 272 |
| Tru1I | TTAA | 1 cut(s) | 328 |
| Tru9I | TTAA | 1 cut(s) | 328 |
| TseI | GCWGC | 1 cut(s) | 143 |
| TspDTI | ATGAA | 1 cut(s) | 284 |
| XapI | RAATTY | 3 cut(s) | 22, 186, 291 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 265 |
| XhoI | CTCGAG | 1 cut(s) | 102 |
| XmiI | GTMKAC | 1 cut(s) | 226 |
| XmnI | GAANNNNTTC | 1 cut(s) | 97 |
| XspI | CTAG | 1 cut(s) | 276 |